mRNA_H-paniculata_contig52506.12623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52506.12623.1
Unique NamemRNA_H-paniculata_contig52506.12623.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: D7FJW7_ECTSI (ENDO3c domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.550e-13
Identity = 32/50 (64.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   67 QAKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAVFDAW 216
            +AK+K+IRE A++I+RRH G VPRR++++LALPGVGPAL +IL+ VFD+W
Sbjct:  162 KAKAKHIRESASIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSW 211
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: A0A6H5L0N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.250e-13
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   70 AKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAVFDAW 216
            AK+K+IRE A +I+RRH G VPRR++++LALPGVGPAL +IL+ VFD+W
Sbjct:  111 AKAKHIRESAGIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSW 159
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: UPI000A2B011D (endonuclease III-like protein 1 isoform X5 n=1 Tax=Sus scrofa TaxID=9823 RepID=UPI000A2B011D)

HSP 1 Score: 52.8 bits (125), Expect = 2.680e-6
Identity = 24/72 (33.33%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    1 VWDSHPLKRRNVLFTCPCSSARQAKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAVFDAW 216
            V+   P + + +    P     Q+K KYI++ +A++ +R+GG +P    +++ALPGVGP +  + +AV  AW
Sbjct:  203 VYSQRPRRAQALPSGAPAGHRVQSKVKYIKQTSAILQQRYGGDIPASVPELVALPGVGPKMAHLAMAV--AW 272
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: F1RFB3_PIG (Endonuclease III-like protein 1 n=11 Tax=Suidae TaxID=9821 RepID=F1RFB3_PIG)

HSP 1 Score: 52.8 bits (125), Expect = 2.750e-6
Identity = 24/72 (33.33%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    1 VWDSHPLKRRNVLFTCPCSSARQAKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAVFDAW 216
            V+   P + + +    P     Q+K KYI++ +A++ +R+GG +P    +++ALPGVGP +  + +AV  AW
Sbjct:  193 VYSQRPRRAQALPSGAPAGHRVQSKVKYIKQTSAILQQRYGGDIPASVPELVALPGVGPKMAHLAMAV--AW 262
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: A0A7S1NPD5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPD5_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 6.530e-6
Identity = 20/46 (43.48%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   67 QAKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAV 204
            ++K+KYI+E AA++  RHG +VP    +++ALPGVGP +  ++++V
Sbjct:   42 RSKAKYIKEAAAVLQSRHGSRVPSTLKELVALPGVGPKVANLVLSV 87
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BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Match: UPI0006433EFA (endonuclease III-like protein 1 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI0006433EFA)

HSP 1 Score: 48.5 bits (114), Expect = 8.660e-5
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   67 QAKSKYIREGAALILRRHGGKVPRRKSDILALPGVGPALGQILVAVFDAW 216
            ++K KYI++  A++ +R+GG +P   S+++ALPGVGP +  + +AV  AW
Sbjct:  197 RSKVKYIKQTTAILQQRYGGDIPASVSELVALPGVGPKMAHLAMAV--AW 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52506.12623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJW7_ECTSI1.550e-1364.00ENDO3c domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L0N6_9PHAE3.250e-1365.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000A2B011D2.680e-633.33endonuclease III-like protein 1 isoform X5 n=1 Tax... [more]
F1RFB3_PIG2.750e-633.33Endonuclease III-like protein 1 n=11 Tax=Suidae Ta... [more]
A0A7S1NPD5_9EUGL6.530e-643.48Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI0006433EFA8.660e-542.00endonuclease III-like protein 1 n=1 Tax=Condylura ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52506contigH-paniculata_contig52506:99..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.7e-11
Seed eggNOG ortholog2880.D7FJW7
Preferred nameNTH1
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930524.6617246-CDS-H-paniculata_contig52506:98..3141622930524.6617246-CDS-H-paniculata_contig52506:98..314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52506 99..314 +
1691481331.4321551-CDS-H-paniculata_contig52506:98..3141691481331.4321551-CDS-H-paniculata_contig52506:98..314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52506 99..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52506.12623.1prot_H-paniculata_contig52506.12623.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52506 99..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52506.12623.1

>prot_H-paniculata_contig52506.12623.1 ID=prot_H-paniculata_contig52506.12623.1|Name=mRNA_H-paniculata_contig52506.12623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
VWDSHPLKRRNVLFTCPCSSARQAKSKYIREGAALILRRHGGKVPRRKSD
ILALPGVGPALGQILVAVFDAW
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mRNA from alignment at H-paniculata_contig52506:99..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52506.12623.1 ID=mRNA_H-paniculata_contig52506.12623.1|Name=mRNA_H-paniculata_contig52506.12623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig52506:99..314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGGGATTCCCACCCACTAAAAAGGCGTAATGTGCTGTTTACCTGCCC
TTGTTCTTCTGCTCGACAGGCCAAGTCTAAATACATCCGTGAAGGAGCCG
CCCTGATCCTCCGTCGACATGGGGGAAAAGTGCCTCGACGTAAATCTGAT
ATCTTGGCGCTACCCGGCGTGGGTCCCGCGCTAGGGCAGATACTCGTCGC
TGTCTTCGATGCCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig52506:99..314+

>mRNA_H-paniculata_contig52506.12623.1 ID=mRNA_H-paniculata_contig52506.12623.1|Name=mRNA_H-paniculata_contig52506.12623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig52506:99..314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGGGATTCCCACCCACTAAAAAGGCGTAATGTGCTGTTTACCTGCCC
TTGTTCTTCTGCTCGACAGGCCAAGTCTAAATACATCCGTGAAGGAGCCG
CCCTGATCCTCCGTCGACATGGGGGAAAAGTGCCTCGACGTAAATCTGAT
ATCTTGGCGCTACCCGGCGTGGGTCCCGCGCTAGGGCAGATACTCGTCGC
TGTCTTCGATGCCTGGGTTTGGGATTCCCACCCACTAAAAAGGCGTAATG
TGCTGTTTACCTGCCCTTGTTCTTCTGCTCGACAGGCCAAGTCTAAATAC
ATCCGTGAAGGAGCCGCCCTGATCCTCCGTCGACATGGGGGAAAAGTGCC
TCGACGTAAATCTGATATCTTGGCGCTACCCGGCGTGGGTCCCGCGCTAG
GGCAGATACTCGTCGCTGTCTTCGATGCCTGG
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