mRNA_H-paniculata_contig5242.12612.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5242.12612.1
Unique NamemRNA_H-paniculata_contig5242.12612.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5242.12612.1 vs. uniprot
Match: D7FKB4_ECTSI (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.340e-23
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 3 
Query:  294 MCKADHSSTDSGSGGSGSGVLGRMLHLKGRMPSSSNGAADGGAASAGEKGASS-----PSIPPLLRLVTSDVLTEACCLLDAKSLATGATVCRAMKEVCQGFYPWRLLCCREWGLLEEGEKGQG 650
            MCKA     D G       +L RM  L+G MP+     A G A +  ++G  +     P +PP+LRL+++DVLTEAC LLD +SLAT A  CR+ ++VCQG YPWR LCCREW L +  E+ +G
Sbjct:    1 MCKAGQGKADGG-------ILSRMRQLQGDMPADEGEGASGVAGAKEDEGDGAAALPPPLLPPVLRLLSADVLTEACTLLDPRSLATAAAACRSFRDVCQGAYPWRGLCCREWELSDATEEEEG 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5242.12612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKB4_ECTSI4.340e-2345.97B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5242contigH-paniculata_contig5242:5767..10190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue6.1e-21
Seed eggNOG ortholog2880.D7FKB4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG1477@1,KOG1477@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size662
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5242.12612.1prot_H-paniculata_contig5242.12612.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5242 6060..10190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.41563-UTR-H-paniculata_contig5242:5766..60591622930523.41563-UTR-H-paniculata_contig5242:5766..6059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5242 5767..6059 +
1691481330.8377185-UTR-H-paniculata_contig5242:5766..60591691481330.8377185-UTR-H-paniculata_contig5242:5766..6059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5242 5767..6059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.4309595-CDS-H-paniculata_contig5242:6059..61831622930523.4309595-CDS-H-paniculata_contig5242:6059..6183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5242 6060..6183 +
1691481330.8486097-CDS-H-paniculata_contig5242:6059..61831691481330.8486097-CDS-H-paniculata_contig5242:6059..6183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5242 6060..6183 +
1622930523.4462512-CDS-H-paniculata_contig5242:9945..101901622930523.4462512-CDS-H-paniculata_contig5242:9945..10190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5242 9946..10190 +
1691481330.8573558-CDS-H-paniculata_contig5242:9945..101901691481330.8573558-CDS-H-paniculata_contig5242:9945..10190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5242 9946..10190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5242.12612.1

>prot_H-paniculata_contig5242.12612.1 ID=prot_H-paniculata_contig5242.12612.1|Name=mRNA_H-paniculata_contig5242.12612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MCKADHSSTDSGSGGSGSGVLGRMLHLKGRMPSSSNGAADGGAASAGEKG
ASSPSIPPLLRLVTSDVLTEACCLLDAKSLATGATVCRAMKEVCQGFYPW
RLLCCREWGLLEEGEKGQGSPNE
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mRNA from alignment at H-paniculata_contig5242:5767..10190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5242.12612.1 ID=mRNA_H-paniculata_contig5242.12612.1|Name=mRNA_H-paniculata_contig5242.12612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4424bp|location=Sequence derived from alignment at H-paniculata_contig5242:5767..10190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGAGTACTCAATTGCGGAAATCAAGATAACAGAAAACAGGCCACACAG
ATATTTCAACATCACATTAGCAGGCACAACTTTGCGATCACCTACCTTCT
TTTCATTTCTCTTGCCCTCTCTCTCCCGCTTTTATCTCCCTTAGTGGCTT
CTTCCTTCATCCAGAGCAGAGAGAAGGACGCTTTTCCGAGTCCTCCGCCA
TCCTCAAGAGACGACCGACAGAGGAACAGTACAGTATAGTACAGCACAGT
AGTACACAGGCTGCTCTTCGCATCGTTTCTTCCGTTGACCAACATGTGCA
AAGCTGACCACAGCAGTACAGACTCGGGCAGCGGTGGCTCAGGGTCGGGC
GTCCTGGGCCGCATGCTGCACCTCAAGGGTAGGATGCCTTCGTCTTCTAA
CGGGGCGGCCGATGGCGGTGAGTACATCCTCAACGTCTCCCTAGAGACAG
TCTGCTCCAGCAAACATCAACTACAAACATACTTATTTAGCAACATATGG
AAAGCACTCTGGGTCACGCAGCGAAAACTTTGGACCATCAGTCAGTGTAG
AAGGTTAAAGGTTAGAGCAGACACTCAGTATAACATGCTGGGCGTGTAAA
GACCGCACTTGTTTGCAGTGGGCGGTGGGAGAGGCAGGAGATAGAATCAC
GCGTAATTGCAGAGGCGGTGCGAGCTGAAATCCCGCCGCTTTCAGTAGGC
CCCGCCTGTCGTGTATTGTTTGATAAGTCACATTGAAAAATTGTGGGCAC
TGTTTTTGGCATGTGAGTAGTTCTCCAAGTATTATTGGACTGGGCGCATG
TCCGCCAGAAGGAACCACCAGCTCTATAGATGCGCGGTTGCGTTGTAGTA
ATCAGGGCGGGGAGGGCATTCATGAAGCCCCCATGTATGGCCAACAAGTA
TAAGGACAACCCAATGATGAAGAACACGTGGGTGTCAAATGATTTCACTA
TCATGTGCTGTGTGCTGTGCGGCTTGAGCACCCCAGAGTTAGTCCTTCGA
ACATTGGCTCCACTTGAAGTTCGGAGGAATAGACCGCATGATGCATGCCA
CACAGCTTTTGTTAACTGTGTAATCACAACGCATAATCGTTATGGCGCAC
GTATATGCACACGACGCAGTTCAGTCAACGATAACCTGGCACCCCGTGCT
CCCCCTCTATGAGCCTTATTAGTTTATTGAACCCTATTTTCAGTGAAAGG
AGTCGAGAGCCATCTCTGTCTCGCTAATTATGTCCTGCTGTCACCGCTTT
TTAGAAAAGTCAAATATTTTAGGGGTACAGACTGCAGTAGTTCGTCTGTA
AGTCAAATCTAACTTTTGCTCATCACCCATCACTATGCGGGTGTACATTA
TTTAGTATAATAGCTGGTTGTTTCGTGAAAGCTCGAAGCTTCGTGCATCG
GGCTGGACTAAAGGCCCGTTTGCTCTGCCCCCCGCCCCAATAACTTTTTA
TCCACTTCATCGATATTTTGTCATGCCCATGGCTTGGATGTACTTCGATT
GGGTGACAGGAAAGAAGAGATATACCACACACGTGCCGCTGTCAGGATGG
AAAGTCTGGCTCCACGCTCGAAGAGTCAACCAAAAAGTTCATTCTATTTC
ACGATTTACGCAAGTTCGGAGAGGGTACACGACAAGGGGTACATTAGAGC
CTTGAGCACCAACTGTGGTTCGTTTTCGTTTATTGGGAGTGAAGGATTGG
AAATTGTGGGAGTAAAAAACGAAGAAAAAAAGGCGTGGCGGATGAGTAGA
AAGAAAACGGTGAAACTAATGCCTTGTTCGTTGTCTCTTCGTCCATTGAT
CAGTCACAGGGCCCTTCCACCAGTCATTATATATATATAATATTTTCGCG
TCTCACCATTTTTACTTTTTACTTTCGTCGATAAGGCCAAGTCTTGAGAA
AGAAAATAAATGGTGAAAAATACTCTTTTTTTTTTTTTTTCAAGATATCC
GCAGCAAATCGGTCACGGGCTGTACTTGTCAGTTACCATATGAACGCTAT
TGGCATTTGTCGTAACGGACACCTTTCCTGCGAAAACGGATGCGTCGACA
TCCACTTCTACTCTTGAGATGTTGCAGATAATCCGCAGTCATTCCTTTTC
GAAGTTGAATTGGAATTTGTATTTTCTAGCCATCCGTTACCGACGGGACA
TGAAAAAAGAATCTTGTGAGTGAATGCTCAGTACTTCGAACAAGTGAAAA
AAAAATATGAAAGCTATAACGAAATTCAACTGTCAAGGCCAATGTTTTTG
TTCAGAACATGTTTTTGGTTGGTCAATGCAACCGGAGATTACCCCCCCTC
CCGAGGCACCTTTCTATGCGTCCGGCTGCACCTCCCGCTATCACATCCAC
CTTGTGGTGTAGGTGTCTCTTTTGCTATCATATCCGAAACCCACAAGATG
CCTGCTCGGGTTTAAAGTAACTTACGTTGACTACCGATAGACCTACCTCT
TTCTACTCAAGATCAATTAACCGAGCTCTGCTACCGGTGAATCGACTGCT
ACTTCTGATGAAGTACCTTACGGTATGGCCACTTCGACCTTTATAGTCAG
TACTACCGTTGAATCCATCTGTAGTATCGATGAATCTACCTCTAACAATA
ATAAATCCACCTGCAAGGCCACTTCTTGTGGGACATGGAAGCTTTTGAAA
AAGTGGATGTTTACAATTATCCAAGTGAGAAATTCGTTTGACCGTTTCAT
ATGGGGGAAAAAAAAGAGGATTTATTTTTCAAAAATCCAAGTCGACGAAA
CTTTGCTCCATGAGGCGGGGGAAATTTATAATTATCCTAGTGGCATTTTC
GGAACTTGGATCATTTTAATCTGGAGCACACGACGAAAGCAGGAGCGGCA
TCGTCAGAAAACACGGCAATATCTATCTGATTTTCCAAGAGTACAAACAG
TGAGCCCGCCATACCTCACACACAAGCCACCCTTGTCGCAGTACACACAC
ATCCTACAGTGATGGTGCCAGTTACTGAGGATGAAAATGTCGATTGCTGT
GGGTCAAGCAACTCCGAACATGACCCCCTGTTACGATATTCTCTAGAGAT
GTTGACATCGTGCCTATCGCTGACCTCTATCTCGTTTGCTATCTACAGCT
GGCGTTTTTCCTGCTCTTTTCAAAACTGAGGACACGACTTTACTCTGTTC
TCCTCGCAGCAGCTACTGACTGTCCAAGTTTGGAAATCACAGTTTCCTAT
AAGAAGTGGTTCTTCGGTTATTGAATTTGATATTTTCACTTGGATAATTG
AAAATATTTATTATTACTTTTCAATTATCCAAGTCACATAAACAGTGGCC
TAGCACCGATAAATCCACCTCTAGGTTCGTACGAAAGATATACTGGGAGT
CAATATACCTATATTTTTTGCACCTTTTATAAGCTCCTAGTTCAAGCCTA
GGGATATCACAATCCTGTCACTTGCCAACCCCCCCCAAGCTCAAGTGCAT
GAAGTACCTTGACCCTTTGAACGCCGGGGTCCTGGGATGCGATATCTTGC
GACGCGTGAAATCTCACGTCCTTGTGTAGCAAGATCGGGGGCGGGTGCAT
TTTGAGGTAGGGGGGATACCGTTTTGTGCTACATGAAAATGTCTTTAGCG
AGCGTGGCATCATACCGATTGGTGACATGCAATGAAATATACACCAAAAT
TAGTAAATACAGTCATGTAACGCTAGGAGCGAGATGGGCTGGTGTGCTCT
AGTCGCAATGTGCTGATCTGGAGGTAGTACAGCTGATAGACAGCAGAGCA
CACGTTAGTTCCATAGTCAGCAGTATTGCGCATGACCATGGAATAAACTG
ACAGACCGTCGGATGCATTGAGTGCCGTTAGTAATTTGTACCCTGCTGTA
CTCCTGCAAAATCATATCTATCTGCGCGGTGATAGTGCGGTAACGGCGAC
ACAACCAAATGAGGAGGTTGCAGTTACCAGCATCTTGCGAGAGTTCCTCA
GCGTGGGATAACCGCTGCGAATGTGCCTGTCCTCACATGCGTGATGATAC
CCACAGACACAGCAGCAGTATGCAGTCTGCCAAAGCTGTAGTTTGAACAT
TATAACACCGGTGACAGCGTCGAACACAACTAATGATTAGACATTGGGCC
TCCTGGGGTAAAAAGTCCTCCTGTTGTATTTAACTGTAATTTATTTGGTT
CGAATAACCGTGCTTATTTGTTGTGACAGGTGCCGCTAGTGCCGGCGAAA
AAGGTGCTTCCTCTCCCTCCATCCCGCCACTGCTACGCCTCGTCACAAGC
GACGTTCTTACGGAGGCGTGTTGCTTGCTGGACGCGAAGTCCCTCGCAAC
GGGTGCCACGGTATGCCGCGCCATGAAAGAAGTGTGCCAGGGTTTCTACC
CGTGGAGACTTTTGTGCTGCCGGGAATGGGGGCTGCTGGAGGAGGGGGAG
AAGGGGCAGGGGAGTCCAAATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5242:5767..10190+

>mRNA_H-paniculata_contig5242.12612.1 ID=mRNA_H-paniculata_contig5242.12612.1|Name=mRNA_H-paniculata_contig5242.12612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig5242:5767..10190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAAAGCTGACCACAGCAGTACAGACTCGGGCAGCGGTGGCTCAGG
GTCGGGCGTCCTGGGCCGCATGCTGCACCTCAAGGGTAGGATGCCTTCGT
CTTCTAACGGGGCGGCCGATGGCGATGTGCAAAGCTGACCACAGCAGTAC
AGACTCGGGCAGCGGTGGCTCAGGGTCGGGCGTCCTGGGCCGCATGCTGC
ACCTCAAGGGTAGGATGCCTTCGTCTTCTAACGGGGCGGCCGATGGCGGT
GCCGCTAGTGCCGGCGAAAAAGGTGCTTCCTCTCCCTCCATCCCGCCACT
GCTACGCCTCGTCACAAGCGACGTTCTTACGGAGGCGTGTTGCTTGCTGG
ACGCGAAGTCCCTCGCAACGGGTGCCACGGTATGCCGCGCCATGAAAGAA
GTGTGCCAGGGTTTCTACCCGTGGAGACTTTTGTGCTGCCGGGAATGGGG
GCTGCTGGAGGAGGGGGAGAAGGGGCAGGGGAGTCCAAATGAGGTGCCGC
TAGTGCCGGCGAAAAAGGTGCTTCCTCTCCCTCCATCCCGCCACTGCTAC
GCCTCGTCACAAGCGACGTTCTTACGGAGGCGTGTTGCTTGCTGGACGCG
AAGTCCCTCGCAACGGGTGCCACGGTATGCCGCGCCATGAAAGAAGTGTG
CCAGGGTTTCTACCCGTGGAGACTTTTGTGCTGCCGGGAATGGGGGCTGC
TGGAGGAGGGGGAGAAGGGGCAGGGGAGTCCAAATGAG
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