mRNA_H-paniculata_contig5176.12510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5176.12510.1
Unique NamemRNA_H-paniculata_contig5176.12510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.960e-10
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   49 KEIRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            ++ R+++ +L FVDLKKAYDTVP EA F KL  YGVRG ML FIR
Sbjct:  640 RKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIR 684
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.830e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   40 LPEKEIRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            L  ++I +  ++L F+DLKKAYDTVPH A F KL   GVRG+ L FI+
Sbjct:  831 LRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQ 878
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: T1BBI0_9ZZZZ (RNA-directed DNA polymerase (Reverse transcriptase) domain protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1BBI0_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 6.020e-7
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   70 TFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            TF+ F+DL KAYD+VPHEA   K+  +G+RGR L +IR
Sbjct:   96 TFICFIDLNKAYDSVPHEACLKKIEDFGIRGRALSWIR 133
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.790e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   49 KEIRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            + I K++  L F+D+KKAYD+VPH A F KL   GVRG +L F++
Sbjct:   16 RRIEKRDIVLLFIDVKKAYDSVPHGALFFKLAKAGVRGPILAFVK 60
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   70 TFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            T+  F+DL+KAYDT+PHE  F KL   G+ G ML F++
Sbjct:  542 TYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLK 579
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A5N5Q8K6_9AGAM (Reverse transcriptase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5Q8K6_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   55 IRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            I  Q TF  F+D KKA+D V HEA +  L H GVRG+ L FI+
Sbjct:  505 INNQTTFGVFIDFKKAFDKVHHEALYRLLDHIGVRGKALNFIK 547
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A074REN7_9AGAM (Reverse transcriptase (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074REN7_9AGAM)

HSP 1 Score: 49.3 bits (116), Expect = 3.000e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   52 EIRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            +++   TF  FVD KKA+D V HEA +  L H GVRG+ L FIR
Sbjct:  158 KVKPTATFAVFVDFKKAFDKVHHEALYRILDHIGVRGKALEFIR 201
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BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Match: A0A0L6V0N7_9BASI (Reverse transcriptase domain-containing protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V0N7_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 9.450e-5
Identity = 19/40 (47.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   64 QNTFLTFVDLKKAYDTVPHEAFFGKLHHYGVRGRMLGFIR 183
            QNTF+ FVD KKA+D VPHE  + +LH  G+   ++  I+
Sbjct:   35 QNTFVIFVDFKKAFDRVPHEGLWARLHQTGIHKDLISIIK 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5176.12510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE3.960e-1064.44Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM2.830e-754.17Reverse transcriptase domain-containing protein n=... [more]
T1BBI0_9ZZZZ6.020e-757.89RNA-directed DNA polymerase (Reverse transcriptase... [more]
A0A2R5FKX6_9STRA8.790e-651.11Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A7S1SJ55_9CHLO1.210e-552.63Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A5N5Q8K6_9AGAM1.210e-553.49Reverse transcriptase n=1 Tax=Ceratobasidium theob... [more]
A0A074REN7_9AGAM3.000e-552.27Reverse transcriptase (Fragment) n=1 Tax=Rhizocton... [more]
A0A0L6V0N7_9BASI9.450e-547.50Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5176contigH-paniculata_contig5176:790..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size184
Cds size177
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.1703327-UTR-H-paniculata_contig5176:789..7951622930511.1703327-UTR-H-paniculata_contig5176:789..795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5176 790..795 +
1691481325.294153-UTR-H-paniculata_contig5176:789..7951691481325.294153-UTR-H-paniculata_contig5176:789..795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5176 790..795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930511.2030733-CDS-H-paniculata_contig5176:795..9721622930511.2030733-CDS-H-paniculata_contig5176:795..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5176 796..972 +
1691481325.307238-CDS-H-paniculata_contig5176:795..9721691481325.307238-CDS-H-paniculata_contig5176:795..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5176 796..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5176.12510.1prot_H-paniculata_contig5176.12510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5176 796..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5176.12510.1

>prot_H-paniculata_contig5176.12510.1 ID=prot_H-paniculata_contig5176.12510.1|Name=mRNA_H-paniculata_contig5176.12510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MYSTSRMPTRDLPEKEIRKQNTFLTFVDLKKAYDTVPHEAFFGKLHHYGV
RGRMLGFIR
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mRNA from alignment at H-paniculata_contig5176:790..972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5176.12510.1 ID=mRNA_H-paniculata_contig5176.12510.1|Name=mRNA_H-paniculata_contig5176.12510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig5176:790..972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGAATGTATAGTACAAGCAGGATGCCTACTAGAGATCTGCCAGAGAA
GGAAATTCGTAAACAAAATACCTTCCTAACATTTGTAGACCTTAAGAAAG
CGTATGATACCGTCCCACACGAAGCTTTTTTTGGTAAATTACACCACTAT
GGCGTCCGAGGTAGGATGTTAGGGTTTATCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5176:790..972+

>mRNA_H-paniculata_contig5176.12510.1 ID=mRNA_H-paniculata_contig5176.12510.1|Name=mRNA_H-paniculata_contig5176.12510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig5176:790..972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATAGTACAAGCAGGATGCCTACTAGAGATCTGCCAGAGAAGGAAAT
TCGTAAACAAAATACCTTCCTAACATTTGTAGACCTTAAGAAAGCGTATG
ATACCGTCCCACACGAAGCTTTTTTTGGTAAATTACACCACTATGGCGTC
CGAGGTAGGATGTTAGGGTTTATCCGAATGTATAGTACAAGCAGGATGCC
TACTAGAGATCTGCCAGAGAAGGAAATTCGTAAACAAAATACCTTCCTAA
CATTTGTAGACCTTAAGAAAGCGTATGATACCGTCCCACACGAAGCTTTT
TTTGGTAAATTACACCACTATGGCGTCCGAGGTAGGATGTTAGGGTTTAT
CCGA
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