mRNA_H-paniculata_contig4910.12077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4910.12077.1
Unique NamemRNA_H-paniculata_contig4910.12077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4910.12077.1 vs. uniprot
Match: D7FZ75_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ75_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.450e-59
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:    1 LLVIFQSRPDVDQQIAVLHELNTALTMASGHPSQNRVGGVIQALVPLLSGVNNEVVLLAIRALITCIDITPRAATSLVESGAVKPMCRRLLKIQDMDVAEACLKCLHLLSK 333
            LL + Q+RP VDQQIAVLHELNT+LTMASGHPSQNRVGGVIQ LVPLLSG NNEVVLLAIRALITCIDITPRAA SLV SGAVKPMC+RLL+IQDMDVAEACLKCLHLLSK
Sbjct:    7 LLHVLQARPGVDQQIAVLHELNTSLTMASGHPSQNRVGGVIQTLVPLLSGANNEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSK 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4910.12077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ75_ECTSI1.450e-5989.19HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4910contigH-paniculata_contig4910:124..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.4e-45
Seed eggNOG ortholog2880.D7FZ75
Preferred nameUFD4
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032991,GO:0034622,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051258,GO:0051338,GO:0051348,GO:0051603,GO:0051972,GO:0051974,GO:0060255,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0168@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-13_002850.1
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930452.298131-CDS-H-paniculata_contig4910:123..2941622930452.298131-CDS-H-paniculata_contig4910:123..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 124..294 -
1691481297.9770892-CDS-H-paniculata_contig4910:123..2941691481297.9770892-CDS-H-paniculata_contig4910:123..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 124..294 -
1622930452.3175523-CDS-H-paniculata_contig4910:698..8601622930452.3175523-CDS-H-paniculata_contig4910:698..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 699..860 -
1691481297.9890132-CDS-H-paniculata_contig4910:698..8601691481297.9890132-CDS-H-paniculata_contig4910:698..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4910 699..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4910.12077.1prot_H-paniculata_contig4910.12077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4910 124..860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4910.12077.1

>prot_H-paniculata_contig4910.12077.1 ID=prot_H-paniculata_contig4910.12077.1|Name=mRNA_H-paniculata_contig4910.12077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
LLVIFQSRPDVDQQIAVLHELNTALTMASGHPSQNRVGGVIQALVPLLSG
VNNEVVLLAIRALITCIDITPRAATSLVESGAVKPMCRRLLKIQDMDVAE
ACLKCLHLLSK
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mRNA from alignment at H-paniculata_contig4910:124..860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4910.12077.1 ID=mRNA_H-paniculata_contig4910.12077.1|Name=mRNA_H-paniculata_contig4910.12077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig4910:124..860- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTGGTCATTTTCCAGTCTCGTCCGGATGTGGACCAACAGATTGCAGT
GCTCCATGAGCTCAACACCGCTCTCACAATGGCCTCGGGTCACCCTAGCC
AAAATAGGGTCGGGGGCGTGATCCAGGCACTGGTACCGCTGCTGAGCGGC
GTGAATAATGAGGTACTATCAAATAGATGTACATCTATGTGTGGGTGTGT
TTTAATTTAATTTAATTTAATTCTACGGGTGGTGGTTTTTGGGGTTTGTG
ATCGCGACAAGAATGCGACGTTGTACTGTTTGTGTTGGCTGTATTGGTTT
ATTGGACTTGATTACTAAAGAGAGGCGGGGCGGGGGGAGGGATGAAAAAA
TCTCATATACCACTAACTAAATTCTCGTTCGTAAATTGACCCTCTGCCAC
AGTCCAACTGACCGTATTGATCGACTGATGAACTGGGTTTTTTGGGGGGG
GGGTTATGGGTCCTTCCCTCGTGGTCGGTCATGTGATCGCTTTTTGGCCG
TGTGGAAAGGCTTGGATATATCCTGTTGAGCTGCATTGGAATATTATTCG
TTGAACCTCATTGCAGGTGGTTCTGCTGGCCATACGAGCTCTGATTACGT
GCATCGATATCACACCGCGGGCGGCCACGAGCTTAGTGGAGAGCGGCGCC
GTGAAGCCGATGTGCAGACGATTACTCAAGATCCAGGATATGGATGTGGC
CGAGGCTTGTCTCAAGTGTCTCCATCTCCTGTCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4910:124..860-

>mRNA_H-paniculata_contig4910.12077.1 ID=mRNA_H-paniculata_contig4910.12077.1|Name=mRNA_H-paniculata_contig4910.12077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4910:124..860- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTGGTCATTTTCCAGTCTCGTCCGGATGTGGACCAACAGATTGCAGT
GCTCCATGAGCTCAACACCGCTCTCACAATGGCCTCGGGTCACCCTAGCC
AAAATAGGGTCGGGGGCGTGATCCAGGCACTGGTACCGCTGCTGAGCGGC
GTGAATAATGAGCTTTTGGTCATTTTCCAGTCTCGTCCGGATGTGGACCA
ACAGATTGCAGTGCTCCATGAGCTCAACACCGCTCTCACAATGGCCTCGG
GTCACCCTAGCCAAAATAGGGTCGGGGGCGTGATCCAGGCACTGGTACCG
CTGCTGAGCGGCGTGAATAATGAGGTGGTTCTGCTGGCCATACGAGCTCT
GATTACGTGCATCGATATCACACCGCGGGCGGCCACGAGCTTAGTGGAGA
GCGGCGCCGTGAAGCCGATGTGCAGACGATTACTCAAGATCCAGGATATG
GATGTGGCCGAGGCTTGTCTCAAGTGTCTCCATCTCCTGTCCAAGGTGGT
TCTGCTGGCCATACGAGCTCTGATTACGTGCATCGATATCACACCGCGGG
CGGCCACGAGCTTAGTGGAGAGCGGCGCCGTGAAGCCGATGTGCAGACGA
TTACTCAAGATCCAGGATATGGATGTGGCCGAGGCTTGTCTCAAGTGTCT
CCATCTCCTGTCCAAG
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