mRNA_H-paniculata_contig49011.12062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49011.12062.1
Unique NamemRNA_H-paniculata_contig49011.12062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.800e-13
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   37 AWFAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVALVSLR 162
            AW  +  FVHEVW+LLQHANILLNPLCQRLDR+YGV L+  R
Sbjct:  162 AWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRR 203
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.720e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   37 AWFAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVALVSLR 162
            AW  +  F HEVW+LLQHANILLNPLCQRLDR+YG+ L+  R
Sbjct:  162 AWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRR 203
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.100e-10
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   55 IFVHEVWVLLQHANILLNPLCQRLDRNYGVALVSLR 162
            + VHEVWV+LQH N+LLNPLCQRLDR YG++L+  R
Sbjct:   44 LLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKR 79
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A7S3LJ98_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.450e-9
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   13 SEQSAEWSAWFAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVALVS 156
            ++ +   S W  + +F HE WV LQH N+L NPLCQRLDR YG+AL+ 
Sbjct:    6 NDSNVSTSHWLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLK 53
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A812Q1W1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 3.690e-9
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   55 IFVHEVWVLLQHANILLNPLCQRLDRNYGVALV 153
            +F+HE WV+LQHAN+LLNP CQRLDR YGV+++
Sbjct:  334 LFLHEAWVMLQHANVLLNPFCQRLDRRYGVSML 366
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A812Z067_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 3.700e-9
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   55 IFVHEVWVLLQHANILLNPLCQRLDRNYGVALV 153
            +F+HE WV+LQHAN+LLNP CQRLDR YGV+++
Sbjct:  336 LFLHEAWVMLQHANVLLNPFCQRLDRRYGVSML 368
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A1Q9D0R3_SYMMI (Caroteno-chlorophyll a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   55 IFVHEVWVLLQHANILLNPLCQRLDRNYGVALV 153
            +F+HE WV+LQHAN+LLNP CQRLDR YGV+++
Sbjct:  334 LFLHEAWVMLQHANVLLNPFCQRLDRRYGVSML 366
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   55 IFVHEVWVLLQHANILLNPLCQRLDRNYGVALV 153
            +F+HE WV+LQHAN+LLNP CQRLDR YGV+++
Sbjct:  330 LFLHEAWVMLQHANVLLNPFCQRLDRRYGVSML 362
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: A0A7S4KNY6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH)

HSP 1 Score: 58.9 bits (141), Expect = 9.410e-9
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   43 FAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVALVSLRY 165
            F   +F HEVW+ +QHAN+LLNP  QRLDR YG+AL+  R+
Sbjct:  103 FTWILFAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRF 143
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BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Match: L1J6G4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6G4_GUITC)

HSP 1 Score: 58.9 bits (141), Expect = 9.530e-9
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   43 FAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVALVSLRY 165
            F   +F HEVW+ +QHAN+LLNP  QRLDR YG+AL+  R+
Sbjct:   95 FTWILFAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRF 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49011.12062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JPB7_9PHAE7.800e-1373.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LAY7_ECTSI3.720e-1269.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C6P6_9STRA9.100e-1069.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3LJ98_9STRA1.450e-952.08Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A812Q1W1_9DINO3.690e-969.70Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A812Z067_9DINO3.700e-969.70Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A1Q9D0R3_SYMMI3.720e-969.70Caroteno-chlorophyll a-c-binding protein n=1 Tax=S... [more]
A0A812V2L4_9DINO3.720e-969.70CER3 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S4KNY6_GUITH9.410e-958.54Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1J6G4_GUITC9.530e-958.54Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49011contigH-paniculata_contig49011:410..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog2880.D8LAY7
KEGG rclassRC02233
KEGG koko:K00485,ko:K14003
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,ko04141,map00982,map01120,map04141
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005950.1
EC1.14.13.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930450.1091511-CDS-H-paniculata_contig49011:409..5741622930450.1091511-CDS-H-paniculata_contig49011:409..574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49011 410..574 +
1691481296.9955857-CDS-H-paniculata_contig49011:409..5741691481296.9955857-CDS-H-paniculata_contig49011:409..574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49011 410..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49011.12062.1prot_H-paniculata_contig49011.12062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49011 410..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49011.12062.1

>prot_H-paniculata_contig49011.12062.1 ID=prot_H-paniculata_contig49011.12062.1|Name=mRNA_H-paniculata_contig49011.12062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
FGDDSEQSAEWSAWFAMGIFVHEVWVLLQHANILLNPLCQRLDRNYGVAL
VSLRY
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mRNA from alignment at H-paniculata_contig49011:410..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49011.12062.1 ID=mRNA_H-paniculata_contig49011.12062.1|Name=mRNA_H-paniculata_contig49011.12062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig49011:410..574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCGATGACTCGGAACAGTCGGCGGAATGGTCGGCGTGGTTTGCGAT
GGGGATTTTCGTTCATGAGGTGTGGGTGCTTCTGCAACACGCGAATATCT
TGCTGAACCCACTTTGCCAAAGGTTGGACCGCAACTACGGGGTCGCCCTG
GTGAGTTTACGATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig49011:410..574+

>mRNA_H-paniculata_contig49011.12062.1 ID=mRNA_H-paniculata_contig49011.12062.1|Name=mRNA_H-paniculata_contig49011.12062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig49011:410..574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCGATGACTCGGAACAGTCGGCGGAATGGTCGGCGTGGTTTGCGAT
GGGGATTTTCGTTCATGAGGTGTGGGTGCTTCTGCAACACGCGAATATCT
TGCTGAACCCACTTTGCCAAAGGTTGGACCGCAACTACGGGGTCGCCCTG
GTGAGTTTACGATACTTCGGCGATGACTCGGAACAGTCGGCGGAATGGTC
GGCGTGGTTTGCGATGGGGATTTTCGTTCATGAGGTGTGGGTGCTTCTGC
AACACGCGAATATCTTGCTGAACCCACTTTGCCAAAGGTTGGACCGCAAC
TACGGGGTCGCCCTGGTGAGTTTACGATAC
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