mRNA_H-paniculata_contig484.11954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig484.11954.1
Unique NamemRNA_H-paniculata_contig484.11954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.880e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  139 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 221
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.980e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLK 220
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.030e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            +I  D +N FN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  + +I+ K
Sbjct:  712 VIQTDCSNTFNTGKRTAIMAQAATSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVAIILK 794
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.440e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 136
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.480e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 615
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.490e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  514 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLK 596
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5JEJ4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.500e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:   13 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 95
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.510e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 610
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.520e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSK 228
[Close]
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.590e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINTGKSRKISSNTGIHQGDGLGPALFCMPVGSILCK 249
            ++  D +NAFN+ KR+AI+ + A   P L  ++A+CY E PA  I+ +++G+ R I   +G+ QGDG+GP LFC  +  I+ K
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 589
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig484.11954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE1.880e-1540.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.980e-1540.96Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJS3_9PHAE4.030e-1540.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ9_9PHAE7.440e-1540.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE7.480e-1540.96Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA96_9PHAE7.490e-1540.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ4_9PHAE7.500e-1540.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JI32_9PHAE7.510e-1540.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLG6_9PHAE7.520e-1540.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE7.590e-1540.96Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig484contigH-paniculata_contig484:35846..36100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930433.5592015-CDS-H-paniculata_contig484:35845..361001622930433.5592015-CDS-H-paniculata_contig484:35845..36100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig484 35846..36100 -
1691481290.2946715-CDS-H-paniculata_contig484:35845..361001691481290.2946715-CDS-H-paniculata_contig484:35845..36100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig484 35846..36100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig484.11954.1prot_H-paniculata_contig484.11954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig484 35846..36100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig484.11954.1

>prot_H-paniculata_contig484.11954.1 ID=prot_H-paniculata_contig484.11954.1|Name=mRNA_H-paniculata_contig484.11954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
LIALDYTNAFNSVKRSAILEEVAILTPGLTPFVAKCYGEKPADIIFQINT
GKSRKISSNTGIHQGDGLGPALFCMPVGSILCKN*
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mRNA from alignment at H-paniculata_contig484:35846..36100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig484.11954.1 ID=mRNA_H-paniculata_contig484.11954.1|Name=mRNA_H-paniculata_contig484.11954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig484:35846..36100- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTATACCAATGCATTCAACTCCGTCAAGCGGTCGGC
GATCTTGGAAGAAGTGGCAATTCTCACCCCAGGACTGACACCTTTCGTAG
CCAAATGCTATGGGGAGAAGCCGGCAGACATCATTTTCCAGATAAACACC
GGTAAAAGCAGGAAAATCTCCTCGAACACGGGAATCCATCAGGGCGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGATCGATCTTGTGCAAGA
ACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig484:35846..36100-

>mRNA_H-paniculata_contig484.11954.1 ID=mRNA_H-paniculata_contig484.11954.1|Name=mRNA_H-paniculata_contig484.11954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig484:35846..36100- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCGCCCTCGACTATACCAATGCATTCAACTCCGTCAAGCGGTCGGC
GATCTTGGAAGAAGTGGCAATTCTCACCCCAGGACTGACACCTTTCGTAG
CCAAATGCTATGGGGAGAAGCCGGCAGACATCATTTTCCAGATAAACACC
GGTAAAAGCAGGAAAATCTCCTCGAACACGGGAATCCATCAGGGCGACGG
ACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGATCGATCTTGTGCAAGA
ACTGACTTATCGCCCTCGACTATACCAATGCATTCAACTCCGTCAAGCGG
TCGGCGATCTTGGAAGAAGTGGCAATTCTCACCCCAGGACTGACACCTTT
CGTAGCCAAATGCTATGGGGAGAAGCCGGCAGACATCATTTTCCAGATAA
ACACCGGTAAAAGCAGGAAAATCTCCTCGAACACGGGAATCCATCAGGGC
GACGGACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGATCGATCTTGTG
CAAGAACTGA
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