mRNA_H-paniculata_contig4740.11778.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4740.11778.1
Unique NamemRNA_H-paniculata_contig4740.11778.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4740.11778.1 vs. uniprot
Match: A0A6H5LM15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM15_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.200e-16
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  695 REEFRSAVRSGLLLHLCPPRGQFADLFGIEEVLRWHVLGMLSAKDLAVFGMTSRAADSTSISDFLWTPLVTAEFPTRVQEVL 940
            +E FRS V SGLLLHLCPP G FADL G  + L  HVLGML A+DLA+ G+T RAA  +  +D LW  LV A+F  R Q  +
Sbjct:  234 QEAFRSRVVSGLLLHLCPPPGHFADLLGCGDELLRHVLGMLGARDLAMVGLTGRAAAVSVAADCLWAKLVAADFSEREQHAV 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4740.11778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LM15_9PHAE9.200e-1656.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4740contigH-paniculata_contig4740:10190..14065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002740.1
Exons3
Model size1400
Cds size1359
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4740.11778.1prot_H-paniculata_contig4740.11778.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4740 10230..14065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.8112257-UTR-H-paniculata_contig4740:10189..102291622930408.8112257-UTR-H-paniculata_contig4740:10189..10229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4740 10190..10229 +
1691481278.579438-UTR-H-paniculata_contig4740:10189..102291691481278.579438-UTR-H-paniculata_contig4740:10189..10229Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4740 10190..10229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930408.8235343-CDS-H-paniculata_contig4740:10229..107751622930408.8235343-CDS-H-paniculata_contig4740:10229..10775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 10230..10775 +
1691481278.5913973-CDS-H-paniculata_contig4740:10229..107751691481278.5913973-CDS-H-paniculata_contig4740:10229..10775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 10230..10775 +
1622930408.8369007-CDS-H-paniculata_contig4740:12695..129561622930408.8369007-CDS-H-paniculata_contig4740:12695..12956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 12696..12956 +
1691481278.6019106-CDS-H-paniculata_contig4740:12695..129561691481278.6019106-CDS-H-paniculata_contig4740:12695..12956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 12696..12956 +
1622930408.854405-CDS-H-paniculata_contig4740:13513..140651622930408.854405-CDS-H-paniculata_contig4740:13513..14065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 13514..14065 +
1691481278.6101778-CDS-H-paniculata_contig4740:13513..140651691481278.6101778-CDS-H-paniculata_contig4740:13513..14065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4740 13514..14065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4740.11778.1

>prot_H-paniculata_contig4740.11778.1 ID=prot_H-paniculata_contig4740.11778.1|Name=mRNA_H-paniculata_contig4740.11778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp
MVNVNSMEGSYDMAEDHWEQEENQHGLLLRSLHEEFLNYGLCPDDFNSNE
HNTDDSHNIINNNSGSSSGGGIDMDSGGCTMPFVPSATGAFITLRYIHRF
NRIVEVRALTMFGDLIVQATTSPRALVMPPTRKGADASTDRSNGEGASGG
DEGSCDGDGIVSRTITFDVERWLPRRGQVEEKVEQRTPQEKEGEEGKEEQ
DESVPAVVAPTTTIPLDLREEFRSAVRSGLLLHLCPPRGQFADLFGIEEV
LRWHVLGMLSAKDLAVFGMTSRAADSTSISDFLWTPLVTAEFPTRVQEVL
SSDDDWVSYRSPQPPSEERKENCERAIPGNKGKRGKKSGNSNNNNNDDDD
EGHHLRVGLRDGRRGTSRRLYATFHHERSEFLSLVDDRNHPSRTLILLPA
EARFNGDVAHTSYARHLSLRGYPTFDPEFPEYSWGPGIGGARAGGSARIG
RWV
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mRNA from alignment at H-paniculata_contig4740:10190..14065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4740.11778.1 ID=mRNA_H-paniculata_contig4740.11778.1|Name=mRNA_H-paniculata_contig4740.11778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3876bp|location=Sequence derived from alignment at H-paniculata_contig4740:10190..14065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCACAGCAGACAGTTTGGATAGGAAATAACAGTCAGGTATGGTGAACG
TAAATAGTATGGAGGGGAGCTACGATATGGCAGAAGATCATTGGGAGCAA
GAAGAAAATCAACACGGATTACTTCTCCGGTCGCTTCATGAAGAATTTTT
AAACTACGGCCTCTGTCCTGACGACTTCAACAGCAATGAGCACAATACCG
ACGACTCCCACAACATCATTAACAACAACAGCGGCAGCAGCAGCGGGGGC
GGGATCGACATGGACAGCGGCGGCTGCACAATGCCTTTCGTTCCTAGCGC
CACTGGTGCCTTCATCACCTTGCGCTATATCCACAGATTCAATCGCATTG
TGGAGGTTCGCGCCCTGACGATGTTCGGTGATCTTATTGTACAGGCTACC
ACCTCTCCGAGGGCTCTTGTTATGCCCCCTACTCGAAAAGGGGCTGATGC
GTCTACTGACCGTTCTAATGGAGAAGGAGCAAGCGGCGGGGACGAGGGCA
GTTGCGATGGTGATGGTATTGTGAGTCGAACTATTACGTTTGACGTGGAG
CGCTGGCTTCCTCGCCGTGGACAGGTAGAAGAGAAGGTGTGTAAATAGCT
ACTGCTAGCGGCGAGCTGTCGGGGAAGGTTGGGCGGGGTTGGTCATCTGC
TAGCCTTCCCAAGGTTTTGAATATCGCTGTTGCCTCCTTGGATGGGTAGC
AGATACAATGTTTGTGGATTCATGGCTTTGTGTGAGTCGGAGGGCAGAAA
GGACCATTGTTTATGTGTTGAAACACGTGGCAGAGGTGCTTTCAGTGGTA
AAAACTCGTGGTGATTTCTTCCATATTTTGACGAATTCGGCTGTTTGTAG
CACAGTTGGTACTAGTATCCTGTTATGGTAATGAAAACTTTGCCTTTTTG
CTTCTTGTCTTTCTTGGGGCGTTTTCATGAGTGGCTAAGGTTATTGGGAA
CTCCGTTTTTTTTGTGCAGTTTACTGGGCTAGTTCAAATAGTAGTTAGAG
GTAATCGCCGCTGTCGTATATTTTTGTTTGCTGATTCCTTGAATGTACTA
TGAGGGATTGTACGCCTCTTGTGGTTGACACATGCTGCAGATGTTGGCCT
CATCATAAGATCATGAGCACGTTAGCCCGGTATGTTGTTCCAGGATCCCT
GTATGTAGTGCAGTAAATATACAACTATATCAGTAGAATGTGGGGCGAAT
TGGATGTCGGGGTGGTGGTTAGATATTGCCTCATTATGCTAGCATAAATT
TGAGCTTAAATTCTTGGAAAACCCGAGCATAATCGGGGCATGAATTCCAC
AAAACGGGCATAGCTTTTCGTGATTCATGGAGCATAAAAAAAAGAACACT
GAGCATAATGAAGCAATGCCTAATGGTGACTGTATAAGAAGGTTGGTGAT
TGGTGATGGATCATTTACTTGCTTTTTATTTTTTCTCGTTTTTTTTCGTG
TTTGGGGGGTCACGCGAAGAACGAATGAACATATCAGTCGTCTGCTCGTT
AGTATTTTCTTCGCTCCGTACCATCATGCGAATCAACAGGGATTATCGAG
TGCCGCATACCAATCAATTACGCGAACAACTCGTCGGTGATGGTTTCATC
AGTACCCGAGTTTTCTTCAGCAATGTAGCTTGTTGCCTTCGAACTACCCA
CTGTGGTTTCATCCTTCGTTTGGGTACCTAAACACCGAATACCGTATGTA
CCGCACCATACCGTGAAGAAGAAAAAGCGTACCGTACGATACCATACCGC
GTGGCCCAAAAACCGAATAATGTTTACCGGACAAGTACCGAGGGGAACAA
ATGCCGTACCGTGCCGTACGGTGCCGCATAACGTGAAAGCCGAATAGAAC
AATTACCAAGGGGAACAAATGCCGTACCGTATCGTGCCGTACGGTGCCGC
GTAACGTGAAAACCGAAAACCGAATACCGTATACCGTATACCGAGCAATT
ACCGAGACGAAACAAACAAACGTAATGTCTTCGCCACATTCAAATACCGT
TACCGAGGGGACCCCTGGAAATTCCAGAAATGAAGAAGTGACAGTTCTGC
CTAATGGTGTTTCTCAACTCTATTTCAAGTTTACGTCCTTCCGACATAAT
CTCAGTTTGTTATCGGCAGCAGGTAAAAAAGGAGGAGAGAATATAGATGA
CAAGAGGACAAAATACCCACGTTTAGAGTGGCTCTTAGTCTAGTCATTTT
CTTGCCCTCGCGTCTTCGTAAACGCACTTGAGCATATCGTATCAGTATTC
AACGTCTCGGTTCAAGTCTCTGCAAAACTCTAAAATTAGCAACGCTGGCT
GACAGATGATCGTCAAATTTGCAGAGAATGCGAGCACCATCTAGTTAACC
TTCAAGTATGTCAATTGACCAGCTGGTAGTATAAAACGAATAATCTGTTG
TTTATGTGTGGTTCTTACCTGTTTGTTGGGTTCTGACCTTCAACCTGTAC
GTGTTTGATTTTGATTATTTTCCCGATTGCTATACTGGTTGTACCCACAC
TCACAGGTGGAGCAGCGAACACCACAGGAGAAAGAGGGGGAGGAGGGTAA
AGAAGAGCAGGATGAGAGCGTCCCGGCAGTTGTTGCTCCCACTACAACTA
TTCCTCTTGATCTGCGCGAAGAATTTCGGTCTGCCGTGCGGTCGGGTTTG
CTGCTGCACCTGTGTCCCCCGCGTGGACAGTTTGCCGACCTATTCGGCAT
AGAGGAAGTCTTGCGCTGGCACGTGCTTGGTATGCTTAGTGCCAAAGATC
TTGCTGTCTTTGGAATGGTGAGAAAATGTTTCACTTGTGTTGACCGGTTT
GCCGGGGACAGGGACGGGAAGTGGTGCAAACGAGAAAAGGCGAACACGTA
AAGAAGACGATGAGGATAAGACCCAACCTCAGTCAAGATATATTGGTGCG
TCTGATAAGATTCCAACGCCCTCTCTAAACACCATTTTTAGTTATAGCAT
AAATATCATTTTTACTGAGATAAGCTAAGTTGTCCCATCAAGACAAAATC
CGCTCATGAGCAATTTCCGAGTCCAACAGAGCGGCGACCAGGGGACACGA
AAGGGAACAACACAAGTGTTGAGCATAACCTGTATCTGTCTTGCAAGTCG
TCGACGACCGAAGCGCCTCAACCTTCCACTTTCCCTTGGGTTGACTGACG
TTGCTTCTTCGCTGTAGTAGCGGGAGCATCAACACCCACCTCTCTTTGAT
CATACACGTAACATGACACGACGTTTTGCTCCGCCCCCCGCTCCATCCCA
CGCCCCACTCCCCTCCCCTCTCTTATGCACGCATGTGTGAACCCTGTGTG
CGCGCCCTGCATTTTGGTCTGCAGACAAGCCGGGCCGCAGACTCCACCTC
CATCTCCGACTTTCTATGGACACCCCTCGTAACTGCCGAGTTCCCCACGC
GCGTACAAGAGGTCTTGTCATCCGATGACGACTGGGTTTCCTACAGGTCA
CCGCAACCACCATCAGAAGAGCGAAAAGAAAACTGCGAGAGGGCCATCCC
CGGCAACAAGGGCAAACGCGGCAAGAAATCAGGCAACAGCAACAACAACA
ATAACGATGACGATGACGAAGGCCACCACCTCCGTGTCGGCCTTCGCGAC
GGAAGAAGAGGAACTTCTCGCAGACTCTACGCCACGTTCCATCACGAGCG
ATCTGAGTTTTTGTCGTTGGTAGATGACCGTAACCATCCCTCGCGTACCC
TCATATTATTGCCCGCCGAAGCACGTTTCAATGGCGACGTCGCCCACACA
TCTTACGCCCGTCACCTCTCTTTGCGCGGCTATCCCACCTTCGACCCGGA
ATTTCCAGAGTACAGCTGGGGACCTGGGATTGGCGGCGCTAGGGCAGGGG
GGAGTGCACGAATAGGGAGATGGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4740:10190..14065+

>mRNA_H-paniculata_contig4740.11778.1 ID=mRNA_H-paniculata_contig4740.11778.1|Name=mRNA_H-paniculata_contig4740.11778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at H-paniculata_contig4740:10190..14065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACGTAAATAGTATGGAGGGGAGCTACGATATGGCAGAAGATCA
TTGGGAGCAAGAAGAAAATCAACACGGATTACTTCTCCGGTCGCTTCATG
AAGAATTTTTAAACTACGGCCTCTGTCCTGACGACTTCAACAGCAATGAG
CACAATACCGACGACTCCCACAACATCATTAACAACAACAGCGGCAGCAG
CAGCGGGGGCGGGATCGACATGGACAGCGGCGGCTGCACAATGCCTTTCG
TTCCTAGCGCCACTGGTGCCTTCATCACCTTGCGCTATATCCACAGATTC
AATCGCATTGTGGAGGTTCGCGCCCTGACGATGTTCGGTGATCTTATTGT
ACAGGCTACCACCTCTCCGAGGGCTCTTGTTATGCCCCCTACTCGAAAAG
GGGCTGATGCGTCTACTGACCGTTCTAATGGAGAAGGAGCAAGCGGCGGG
GACGAGGGCAGTTGCGATGGTGATGGTATTGTGAGTCGAACTATTACGTT
TGACGTGGAGCGCTGGCTTCCTCGCCGTGGACAGGTAGAAGAGAAGATGG
TGAACGTAAATAGTATGGAGGGGAGCTACGATATGGCAGAAGATCATTGG
GAGCAAGAAGAAAATCAACACGGATTACTTCTCCGGTCGCTTCATGAAGA
ATTTTTAAACTACGGCCTCTGTCCTGACGACTTCAACAGCAATGAGCACA
ATACCGACGACTCCCACAACATCATTAACAACAACAGCGGCAGCAGCAGC
GGGGGCGGGATCGACATGGACAGCGGCGGCTGCACAATGCCTTTCGTTCC
TAGCGCCACTGGTGCCTTCATCACCTTGCGCTATATCCACAGATTCAATC
GCATTGTGGAGGTTCGCGCCCTGACGATGTTCGGTGATCTTATTGTACAG
GCTACCACCTCTCCGAGGGCTCTTGTTATGCCCCCTACTCGAAAAGGGGC
TGATGCGTCTACTGACCGTTCTAATGGAGAAGGAGCAAGCGGCGGGGACG
AGGGCAGTTGCGATGGTGATGGTATTGTGAGTCGAACTATTACGTTTGAC
GTGGAGCGCTGGCTTCCTCGCCGTGGACAGGTAGAAGAGAAGGTGGAGCA
GCGAACACCACAGGAGAAAGAGGGGGAGGAGGGTAAAGAAGAGCAGGATG
AGAGCGTCCCGGCAGTTGTTGCTCCCACTACAACTATTCCTCTTGATCTG
CGCGAAGAATTTCGGTCTGCCGTGCGGTCGGGTTTGCTGCTGCACCTGTG
TCCCCCGCGTGGACAGTTTGCCGACCTATTCGGCATAGAGGAAGTCTTGC
GCTGGCACGTGCTTGGTATGCTTAGTGCCAAAGATCTTGCTGTCTTTGGA
ATGGTGGAGCAGCGAACACCACAGGAGAAAGAGGGGGAGGAGGGTAAAGA
AGAGCAGGATGAGAGCGTCCCGGCAGTTGTTGCTCCCACTACAACTATTC
CTCTTGATCTGCGCGAAGAATTTCGGTCTGCCGTGCGGTCGGGTTTGCTG
CTGCACCTGTGTCCCCCGCGTGGACAGTTTGCCGACCTATTCGGCATAGA
GGAAGTCTTGCGCTGGCACGTGCTTGGTATGCTTAGTGCCAAAGATCTTG
CTGTCTTTGGAATGACAAGCCGGGCCGCAGACTCCACCTCCATCTCCGAC
TTTCTATGGACACCCCTCGTAACTGCCGAGTTCCCCACGCGCGTACAAGA
GGTCTTGTCATCCGATGACGACTGGGTTTCCTACAGGTCACCGCAACCAC
CATCAGAAGAGCGAAAAGAAAACTGCGAGAGGGCCATCCCCGGCAACAAG
GGCAAACGCGGCAAGAAATCAGGCAACAGCAACAACAACAATAACGATGA
CGATGACGAAGGCCACCACCTCCGTGTCGGCCTTCGCGACGGAAGAAGAG
GAACTTCTCGCAGACTCTACGCCACGTTCCATCACGAGCGATCTGAGTTT
TTGTCGTTGGTAGATGACCGTAACCATCCCTCGCGTACCCTCATATTATT
GCCCGCCGAAGCACGTTTCAATGGCGACGTCGCCCACACATCTTACGCCC
GTCACCTCTCTTTGCGCGGCTATCCCACCTTCGACCCGGAATTTCCAGAG
TACAGCTGGGGACCTGGGATTGGCGGCGCTAGGGCAGGGGGGAGTGCACG
AATAGGGAGATGGGTCACAAGCCGGGCCGCAGACTCCACCTCCATCTCCG
ACTTTCTATGGACACCCCTCGTAACTGCCGAGTTCCCCACGCGCGTACAA
GAGGTCTTGTCATCCGATGACGACTGGGTTTCCTACAGGTCACCGCAACC
ACCATCAGAAGAGCGAAAAGAAAACTGCGAGAGGGCCATCCCCGGCAACA
AGGGCAAACGCGGCAAGAAATCAGGCAACAGCAACAACAACAATAACGAT
GACGATGACGAAGGCCACCACCTCCGTGTCGGCCTTCGCGACGGAAGAAG
AGGAACTTCTCGCAGACTCTACGCCACGTTCCATCACGAGCGATCTGAGT
TTTTGTCGTTGGTAGATGACCGTAACCATCCCTCGCGTACCCTCATATTA
TTGCCCGCCGAAGCACGTTTCAATGGCGACGTCGCCCACACATCTTACGC
CCGTCACCTCTCTTTGCGCGGCTATCCCACCTTCGACCCGGAATTTCCAG
AGTACAGCTGGGGACCTGGGATTGGCGGCGCTAGGGCAGGGGGGAGTGCA
CGAATAGGGAGATGGGTC
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