mRNA_H-paniculata_contig4732.11762.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4732.11762.1 vs. uniprot
Match: A0A6H5KD05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD05_9PHAE) HSP 1 Score: 362 bits (930), Expect = 1.150e-110 Identity = 278/592 (46.96%), Postives = 320/592 (54.05%), Query Frame = 3
Query: 240 KTKFSKRPTRGMKAAPAYMSFDDVDVEDDDSDGELFIEESCD-----AGPARS---------SSRSPGGNSYNATPSVYRAPSTALQPPQSPLVAFRTADPEAPAAPA-ADAPAVGELGSGIRRGDSDMDV------EQPGEEKGVTGGAGLQMHGAHPGYR---------------MSIPRDPSALTDGGRPHAQSITESFHGYKGYPGYEPDTPVNAQLPHASNRPISTDSLSIRAPPVEGDRRDQHDGEGAPTPS---IAYRQQYSARGAGPSSVTP-----GNYGRGGSMASDIAEG------------------------------PPQSISPSGT--MEMASV-------GGDSHLRPLSTTQSQLQHLTPGTRLSYGSRSGSVYR-------------------------------PSPA----NSIASSFRRGDDGRSIPPMPSEDGMGSVLGT-IGGDEATNEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQVRIIRYDPDIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEPQRIRDAKILAEALRALVDKEERSAMWRG 1658
KTKFSKR +RG+KAA AYMSFDDVDVEDDDSDGELF+E+S D +G ARS SS+S + NA PSVYRAPS L PP + P D + G G G S + V E + + G + ++ + G R SIPRD S L + RPH QS ESFHGYKGYPGYEPDTPV QL R +TD+L+I D R H G PTPS R+ + G G SS+TP + + A G ISPSGT MEMA+ G + + +H T LS +G V PSP+ NS++SS+R I + SEDGMGSVLGT +G ++++NEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQ+RIIRYDP+IKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEPQRIRDAKILAEALRALVDKEERSAMWRG
Sbjct: 25 KTKFSKRASRGLKAASAYMSFDDVDVEDDDSDGELFVEDSRDNDKRASGAARSPVSFAAQAASSKSASAYTVNA-PSVYRAPS--LAPPXXXXXXXXXSSDAPTGGPEDQDGYSAAAAGRGGSDGSSGVPVAAVSAKENMSSHRAIAGDSSAEIWSSGSGLRGGLAGGLRLGGEQRVTSIPRDGSML-ESARPHGQS--ESFHGYKGYPGYEPDTPVAQQLTQPG-RAHATDALTINPGADVSDPRTTHAGAAGPTPSSVRFTPREMEVSSGIG-SSMTPVEREEQQHYQXXXXXXXXASGMDIDGRDEYVEEQQXXXXXXXXXXXXXXXXXQPVISPSGTTSMEMATGLRPPEPRGRAAEVEQYDVDVGNGRHSNTNTGLSSRGGTGGVPMSSTXXXXXXXXXXXXXXENNXXXXXXXXHVVPSPSHSQTNSMSSSYRN------IQQLRSEDGMGSVLGTLVGTEDSSNEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQMRIIRYDPEIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEPQRIRDAKILAEALRALVDKEERSAMWRG 602
BLAST of mRNA_H-paniculata_contig4732.11762.1 vs. uniprot
Match: D8LTK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK7_ECTSI) HSP 1 Score: 300 bits (767), Expect = 1.220e-88 Identity = 235/482 (48.76%), Postives = 272/482 (56.43%), Query Frame = 3
Query: 294 MSFDDVDVEDDDSDGELFIEESCD---AGPARS---------SSRSPGGNSYNATPSVYRAPSTAL---------------------QPPQSPLVAFRTADPEAPAAPAADAPAVGELGSGIRR--GDSDMDVEQPGEEKGVTGG--AGLQMHGAHPGYRMSIPRDPSALTDGGRPHAQSITESFHGYKGYPGYEPDTPVNAQLPHASNRPISTDSLSIRAPPVEGDRRDQHDGEGAPTPS-IAYRQQYSARGAGPSSVTPGNYGRGGSMAS--------DIAEGPPQSISPSGTMEMASVGGDSHLRPLSTTQSQLQHLTPGTRLSYGSRSGSVYR----PSP----ANSIASSFRRGDDGRSIPPMPSEDGMGSVLGTIGGDE-ATNEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQVRIIRYDPDIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEP 1574
MSFDDVDVEDDDSDGELF+E+S D +G +RS SS+S + NA PSVYRAPS A Q S A R D + P A A + E S + GDS ++ G G+ GG GL++ G MSIPRD S L + RPH QS ESFHGYKGYPGYEPDTPV QL R +TD+L+I D R +H G PTPS + + A G P P GR + D+ +G S + +G GG P+S+T + PSP ANS++SS+R I + SEDGMGSVLGT+ G E +TNEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQ+RIIRYDP+IKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEP
Sbjct: 1 MSFDDVDVEDDDSDGELFVEDSRDNRGSGASRSPGSVAAQAASSKSASAYTVNA-PSVYRAPSLAPXXXXXXXXXXXSDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAVAASAKENMSSHQAIAGDSSAEILSSGS--GLRGGLAGGLRLGGEQ--RVMSIPRDGSML-ESARPHGQS--ESFHGYKGYPGYEPDTPVAQQLTQPG-RAHATDALTINPGADVSDPRTKHAGAAGPTPSSVRFTPMEMATGLRP----PEPRGRAAQVEVATRQQHDVDVGDGR-HSNTNTGLSSRGGTGGV----PMSSTXXXXXXXXXXXXXXENNXXXXXXXXHVVPSPSHSQANSMSSSYRN------IQQLRSEDGMGSVLGTLAGTEDSTNEDLQWKRSALKKFHKVMVKGEGLRVVKHNRSGGSQMRIIRYDPEIKALVWNSKRYMKKAGSANVPIVGIKRVGREGNTVSVTAAGRGTIGFEP 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4732.11762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4732.11762.1 >prot_H-paniculata_contig4732.11762.1 ID=prot_H-paniculata_contig4732.11762.1|Name=mRNA_H-paniculata_contig4732.11762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=511bp MADDQDVVVAIAAHGEANAAGGGGDGGGGNSNAKASVKTKFSKRPTRGMKback to top mRNA from alignment at H-paniculata_contig4732:581..15195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4732.11762.1 ID=mRNA_H-paniculata_contig4732.11762.1|Name=mRNA_H-paniculata_contig4732.11762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14615bp|location=Sequence derived from alignment at H-paniculata_contig4732:581..15195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4732:581..15195+ >mRNA_H-paniculata_contig4732.11762.1 ID=mRNA_H-paniculata_contig4732.11762.1|Name=mRNA_H-paniculata_contig4732.11762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3066bp|location=Sequence derived from alignment at H-paniculata_contig4732:581..15195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |