mRNA_H-paniculata_contig469.11679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig469.11679.1 vs. uniprot
Match: D8LM78_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM78_ECTSI) HSP 1 Score: 1009 bits (2610), Expect = 0.000e+0 Identity = 801/1857 (43.13%), Postives = 976/1857 (52.56%), Query Frame = 1
Query: 322 LLRPVLDFLLMAAALLP--LHFVLGQRIVVGEDSPK--EQVWARVTRGVYIAWLTHAAGLMDEMLRVFLGIRLTMGLGTPASVDKVYSKMSRRAEVVAEGITVDDFPALASLYAGGA------QSVRDPQRASSGEIGGGDGSA-----AEEARAQ---SLVMKVDCVAVTARLWSLVPWSRVRQYDKVHLKGITLRLRQVNGILNFSFLALRES---------------------------PGYTSGSDEGTGAGGGVKVGNNSSINGRSSTNRNNSSSVVGGEGSRSG-SMEDLDGI-VFAEATTDDEGEEELSREQDLMAEEAMDPPS-SPRDSVDTNNTFTGGASEG--------GASSSSTSRLSLLGRGRFSGRSRRIAAPWATGVKGQQSDVETAAAAXXXXXXSGDVDARQVHQKGARSVEDSVSLPKDHLSGGGQSRRVVSVASMSQHRSVVGEKPGSENRGNLGMVKILGEAFMRRFNAYAEQVRAAFNRVGEIKVVPSVRTTLFGPGAVGRKK--KRPKHFEVGEILLEEVCICVDAGVWNDLLGDHVGAAFSPEFRLGVKVGPQELLKANGEGRTAKEIGMLLNEKLIRLLTRLVMRETLKTSTLTSMVLTSLALDTDARVRQLQIK-NKSLSPPPLSVEETRSDRRVKHMQHNSAHHNEGVFSCALQENCQTKTADKRSGKLWRGPGRFGSLSALPMGSELPRTGSGRRRRVLSPPLGGSTSNIAPSGERVNGASAGGTGGQGGGAGVPTANGTANHHQGRWRAPGLRLGTTRSLEDPTTAHGGGGEGGDDSTGARSAHQESDLAPDRGDVVGADGXXXXXXXENAKTRRAWGRASEPTVVAQTLSPTRRSQATWLDSGEEGERVTPKTGRGRSLEGVPIDVHCDAKGGASSDIEGAEDRDYETVAKPPPWMEGVAASAKYEEMKPALDVIKRTVLLAVLQQSNRT----------PSAEGSVDCGGATPSGRDGGHWGRAGCASSSE------ERRELNKE----LERKMQEELSAMKRQGKDVDRLVMKALMARVRDSGPNTAFKALASIEISSLLESLAAETRFATYFENGGVDIGHIARSISGRTAGEMVDGVRVTAGKVGAQAQRLRTEALRWRKELLDDNGILPILSDATAGGNA-SLASLVESLSDTILPVNYGLHMVPGGNGNGAGPEGLGQAAVLPIHKDSWERGEAISTDPAERHQRVETGV---GV--GAFGDREEVDEVDVIMQVLDLLEAVEGLKNGIWEGDIVTLGKVEQAVGKVAEGIDVYLILAAGESMLGFLLERLGMLPVGHAKFVGRGVETRVWNLSLEGVQVARHKVDLVMKGFRLPKRGSPVLTPFGPGTIKRYKKRSRCFVVNLDWKMGNGKPVKAYLQPNDITVLEGHDGELSDEDGEKSDARPVKRGIYADRRDIDPLPGSAGENLEPLDGGSGXXXXXXXXXXXXXXXIRAYSSVAPSRGAXXXXGWGRNFYLSKVWNRLRSANVTID-----------GSGHGSESERV----SHKGGTGGVRXXXXXXXXXXXXXXXXXAPRTTA--PSSAYRGAETPELVGVEDVDGDDQCGADGERTQGPPRLRQMPPPPLPPPSLPRNW--------------TAEEIEEILNS-INGTVEGGDGGGGVIRRGESL------LAPSGVDILTAPFLVARISGVGAELKDVRWSVKQTHFPHLKTAGSLEATVSGLTIELELDTQDLAVHDHNEHQGHGNGMGGVSS--------GRSTLGDTPKGLRLSRLRVSVHTVKVHVSNSALSSVYNLAASAFEAAVKRYIVESVEAAVRKSMNALLAMVNHQVSEKWDLLRSVGGGPG 5499
+LRPVLDFLL+AA LLP L + + S K E RVTRGV+IAWLTHAAGL+DE LRVFLGIRLTMGLG+P SVDK Y+KMSR+AE+VAEGI VDDFPAL LYAG +S R+ SG IGG DG++ A ARA+ SLVM+V+ +A TARLWSLVPWS VR+YD+VH+KGITLRLRQVNGILNFSFLAL++ GS GGG G S VG G +G S+EDLDGI E TTD + E E D EE D P + D + GG + G G + +S S++ S RS+ + A G + ++ AAAAXXXXXX R SEN GNLG+ K+LGEAFMRRFNAY++QV AAF+RV +IKVVP + G+K+ KR K FEVGEI LE+VCICVD+GVWNDLLGD VGAAFSPEFRL V+VGP+ELL NG+GR +IG LLN+KL+RLL RLVMRETLKTSTLTS+V+TSLALDTDAR R+LQ K NKSLSPPP+ R RR + G L + SA+ + T S LS P RV R R GL ARS +GA XXXXX S ETVAK PPWMEGV AS +YEEMKP LDVIK+TVLLA+LQQ+NR+ P +G ++ +G WGR + SS E EL E LER+MQ E+ A + G DVDRLVMK L+A VRDSGP+TA+KALASIE+SS ++ ++ TRFA + ++ G+D+ ++RS+SG TAGEM++GV+ TAGKVG +A+RLRTEA+R +KELLD++GILP+L+DA +A SLA+ V L+D + + ++P ++SWERG A+ DP E VE+G+ G+ G GD + E LK I EG V+LGKVEQAVGKVA+GIDVYLILAA ESMLGFLLERLG LPVGHAKF G+GVE RVWNL LEGV V R VDLVMKGFRLPKRG+ V+T FGPG IKRYKKRSRCFVVNLDW++G+GK VKAYLQPNDI +LEGH+G LSDE+ E ++ K + D L A E EP S XXXXXXXXXXXXXXX APS GR L ++WNR +SA G G G ERV GG+GG P TT P G + +V E + G+D C + R G S+ +W A IL+ +G E G G G V RR E + P+ D+++APFLVARISGVGAELKD+ W+VKQTHFP+L+T GSL+AT+SGLTIELELDTQ+L + QG G+G GG R G +P GL+L+RLRVSV VKVHV N+ALS+VYNLAASAFEAAVKR++VE+VEAAVRK++ +LL ++N Q+SEKW++L VGGG G
Sbjct: 47 ILRPVLDFLLLAAVLLPWTLWWDMAGEQCWNPSSYKATEPTLLRVTRGVWIAWLTHAAGLLDEALRVFLGIRLTMGLGSPTSVDKTYTKMSRQAEIVAEGIAVDDFPALVRLYAGAEPPRANKRSSSGTARSGSGRIGGDDGTSYAAGLAAAARARVNKSLVMRVERIAATARLWSLVPWSDVRRYDRVHVKGITLRLRQVNGILNFSFLALKKKGRSGVVGLVGDAAAVXXXXXXXXXXXGADMAGGSRRAMSFGGGPAAGPEGSAG-------------VGAPGYGNGRSLEDLDGIDTDGEDTTDTDELLEYEEEDDHKGEEEGDGACYGPVNDADLLASAGGGDAAGNCDAIALLGRRRARSSSSSMMSADEASLRSQSVTTSGAPGCEARRGTTPWAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXKRKKAAPLSSSENHGNLGVFKVLGEAFMRRFNAYSDQVSAAFDRVSDIKVVPKL-------WRWGKKRGPKRRKRFEVGEIFLEDVCICVDSGVWNDLLGDQVGAAFSPEFRLSVRVGPKELLTPNGKGRLPGDIGKLLNDKLVRLLARLVMRETLKTSTLTSVVITSLALDTDARGRRLQGKHNKSLSPPPIE----RGHRR-----------HAGASETTLPVHA----------------------SAVATAAPTSATASAGSENSLS--------QSPPPRSRV-----------------------------RQRPGGLA--------------------------ARSG-------------IGAVSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDS---------VETVAKVPPWMEGVEASPEYEEMKPTLDVIKQTVLLAMLQQTNRSVDLSTEGFEEPQHQGDINAK------HNGRTWGRRHASRSSSTSKNAGEMLELEGEDKRTLERRMQREIIAAEEAGGDVDRLVMKRLLAGVRDSGPDTAYKALASIELSSFIDKVSKGTRFAQHLDHLGIDVKRLSRSLSGLTAGEMMEGVKDTAGKVGDEARRLRTEAVRVQKELLDESGILPLLNDAGGRDDATSLAAAVGLLTDALSGEHNTASXXXXXXXXXXXXXXXXXXXLVPQDEESWERGVAVPNDPEEEGHSVESGLRSAGIVGGGGGDLDXXXXXXXXXXXXXXXXXXERLKKSIVEGG-VSLGKVEQAVGKVAQGIDVYLILAASESMLGFLLERLGKLPVGHAKFAGKGVEARVWNLDLEGVHVKRENVDLVMKGFRLPKRGTAVMTKFGPGNIKRYKKRSRCFVVNLDWRLGSGKRVKAYLQPNDIEILEGHEGRLSDEE-EVKESGHTKVTVDTSEADASTL---APE--EPGGSKSXXXXXXXXXXXXXXXXXXXXXXXAPSLPPPRAERGGRWPSLPRIWNRRKSAGAPQAAASAELGPVGVGVGDGXXXERVVAAAGKPGGSGGKTMARRTASAPVLLL-----PSTTGALPQQQGEGDPSARVVSTEPL-GEDLCSSAFAREAGQAETTSS--------SVSSSWREAAGTTTCHPARENAPPRSRILDDGDDGVAEDGRGFGEVHRRTERINSQGPITGPNSADVMSAPFLVARISGVGAELKDIMWAVKQTHFPYLRTQGSLQATLSGLTIELELDTQELPAGQRKKPQGGGSGSGGAVGESDXXXXIDRGGSGGSPTGLKLTRLRVSVLAVKVHVKNNALSAVYNLAASAFEAAVKRHVVENVEAAVRKNVTSLLTIINTQLSEKWNVLCKVGGGNG 1729 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig469.11679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig469.11679.1 >prot_H-paniculata_contig469.11679.1 ID=prot_H-paniculata_contig469.11679.1|Name=mRNA_H-paniculata_contig469.11679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1833bp VRFSASLRSPRGGRGVSPRTGLPVRRSVQMRGRLFERRVRGDSNGSSNGHback to top mRNA from alignment at H-paniculata_contig469:18575..30670+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig469.11679.1 ID=mRNA_H-paniculata_contig469.11679.1|Name=mRNA_H-paniculata_contig469.11679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12096bp|location=Sequence derived from alignment at H-paniculata_contig469:18575..30670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig469:18575..30670+ >mRNA_H-paniculata_contig469.11679.1 ID=mRNA_H-paniculata_contig469.11679.1|Name=mRNA_H-paniculata_contig469.11679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10998bp|location=Sequence derived from alignment at H-paniculata_contig469:18575..30670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |