mRNA_H-paniculata_contig46815.11658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0JXH9_9PHAE (Ribosomal protein L33 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXH9_9PHAE) HSP 1 Score: 116 bits (291), Expect = 7.030e-33 Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARILITLKC EC++ GN Q ++++RKKVSYTTTKNRRNTPNRLE+KKFCP+CNLHT+QKEIK
Sbjct: 1 MAKNKGARILITLKCTECRNFGNMTQASTKNRKKVSYTTTKNRRNTPNRLEIKKFCPSCNLHTIQKEIK 69
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A7T8JK09_SCYLO (50S ribosomal protein L33, chloroplastic n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK09_SCYLO) HSP 1 Score: 102 bits (254), Expect = 3.980e-27 Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQ---------INSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+C++CK NNI+ I +S +K+ YTTTKNRRNTP+RLELKK+CPNCNLHT QKEIK
Sbjct: 1 MAKNKGARIIITLRCMDCKKTSNNIEKVQASDGQKIRRKSSRKIDYTTTKNRRNTPDRLELKKYCPNCNLHTQQKEIK 78
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0FAU0_9PHAE (Ribosomal protein L33 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAU0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.780e-26 Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNN---IQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+C CK + N+ INS +S+KK YTTTKNRRNTPNRLELKKFCPNCN HT QKEIK
Sbjct: 1 MAKNKGARIIITLRCTNCKKVSNDNGKTSINSNQVGMAKKSQKKTDYTTTKNRRNTPNRLELKKFCPNCNAHTEQKEIK 79
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F4XLG6_9PHAE (Ribosomal protein L33 n=3 Tax=Sargassum TaxID=3015 RepID=A0A8F4XLG6_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 9.640e-26 Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQ----INSR------SRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKG RI+ITL+C CK IG N + I+S+ SRKK SYTTTKNRRNTP+RLELKKFCPNCN HT+ KEIK
Sbjct: 1 MAKNKGTRIIITLRCTTCKSIGKNNEEKKIIDSKISNVRLSRKKFSYTTTKNRRNTPDRLELKKFCPNCNTHTIHKEIK 79
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: D1J7B7_ECTSI (50S ribosomal protein L33, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B7_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.050e-25 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+CV+CK N + +S +K+ YTTTKNRRNTP+RL LKK+CPNCN+HTLQKEIK
Sbjct: 1 MAKNKGARIIITLRCVDCKKTTTN-NGDKKSSRKIDYTTTKNRRNTPDRLVLKKYCPNCNIHTLQKEIK 68
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0F6U4_AKKLU (Ribosomal protein L33 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F6U4_AKKLU) HSP 1 Score: 97.4 bits (241), Expect = 3.610e-25 Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNI---QINS----RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+C +CK NN+ + NS +S++K+ YTTTKNRRNTP+RLELKKFCPNCN HT QKEIK
Sbjct: 1 MAKNKGARIIITLRCTQCKKGTNNVGNSENNSNQTKKSQRKIDYTTTKNRRNTPDRLELKKFCPNCNSHTQQKEIK 76
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0JZM8_9PHAE (Ribosomal protein L33 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZM8_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 3.610e-25 Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKG RI+ITL+C CK ++NS + +KK+ YTTTKNRRNTP+RLELKKFCPNCN HTLQKEIK
Sbjct: 1 MAKNKGVRIVITLRCTNCKKSAEKRELNSNQGLTDTKRKKKIDYTTTKNRRNTPDRLELKKFCPNCNSHTLQKEIK 76
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A6B7EV79_9PHAE (50S ribosomal protein L33 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV79_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 5.870e-25 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
M KNKGARI+ITL+C +CK +N + R KK+ YTTTKNRRNTP+RLE+KK+CPNCNLHTL KEIK
Sbjct: 1 MPKNKGARIIITLRCQDCKK-NSNTEDQKRKSKKIDYTTTKNRRNTPDRLEVKKYCPNCNLHTLHKEIK 68
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A5B9RCQ8_9PHAE (50S ribosomal protein L33, chloroplastic n=4 Tax=Laminariales TaxID=2886 RepID=A0A5B9RCQ8_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 7.920e-25 Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGNN---IQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+C CK N INS +S+KK+ YTTTKNRRNTP+RLELKKFCPNCN HT QKEIK
Sbjct: 1 MAKNKGARIIITLRCTNCKKTSNTNGKTDINSSQGELAKKSQKKIDYTTTKNRRNTPDRLELKKFCPNCNSHTQQKEIK 79
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0F8H0_MACPY (Ribosomal protein L33 n=2 Tax=Macrocystis TaxID=35121 RepID=A0A8F0F8H0_MACPY) HSP 1 Score: 96.7 bits (239), Expect = 7.920e-25 Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 MAKNKGARILITLKCVECKDIGN-----NIQINS-----RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
MAKNKGARI+ITL+C CK I N NI N +SRKK+ YTTTKNRRNTP+RLELKKFCP CN HT QKE+K
Sbjct: 1 MAKNKGARIIITLRCTNCKKIVNTNGKANINSNQGATAKKSRKKIDYTTTKNRRNTPDRLELKKFCPYCNTHTYQKEVK 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46815.11658.1 >prot_H-paniculata_contig46815.11658.1 ID=prot_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLback to top mRNA from alignment at H-paniculata_contig46815:488..697+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46815.11658.1 ID=mRNA_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig46815:488..697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46815:488..697+ >mRNA_H-paniculata_contig46815.11658.1 ID=mRNA_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig46815:488..697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |