mRNA_H-paniculata_contig46815.11658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46815.11658.1
Unique NamemRNA_H-paniculata_contig46815.11658.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0JXH9_9PHAE (Ribosomal protein L33 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXH9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.030e-33
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARILITLKC EC++ GN  Q ++++RKKVSYTTTKNRRNTPNRLE+KKFCP+CNLHT+QKEIK
Sbjct:    1 MAKNKGARILITLKCTECRNFGNMTQASTKNRKKVSYTTTKNRRNTPNRLEIKKFCPSCNLHTIQKEIK 69          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A7T8JK09_SCYLO (50S ribosomal protein L33, chloroplastic n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK09_SCYLO)

HSP 1 Score: 102 bits (254), Expect = 3.980e-27
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQ---------INSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+C++CK   NNI+         I  +S +K+ YTTTKNRRNTP+RLELKK+CPNCNLHT QKEIK
Sbjct:    1 MAKNKGARIIITLRCMDCKKTSNNIEKVQASDGQKIRRKSSRKIDYTTTKNRRNTPDRLELKKYCPNCNLHTQQKEIK 78          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0FAU0_9PHAE (Ribosomal protein L33 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAU0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.780e-26
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNN---IQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+C  CK + N+     INS       +S+KK  YTTTKNRRNTPNRLELKKFCPNCN HT QKEIK
Sbjct:    1 MAKNKGARIIITLRCTNCKKVSNDNGKTSINSNQVGMAKKSQKKTDYTTTKNRRNTPNRLELKKFCPNCNAHTEQKEIK 79          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F4XLG6_9PHAE (Ribosomal protein L33 n=3 Tax=Sargassum TaxID=3015 RepID=A0A8F4XLG6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.640e-26
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQ----INSR------SRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKG RI+ITL+C  CK IG N +    I+S+      SRKK SYTTTKNRRNTP+RLELKKFCPNCN HT+ KEIK
Sbjct:    1 MAKNKGTRIIITLRCTTCKSIGKNNEEKKIIDSKISNVRLSRKKFSYTTTKNRRNTPDRLELKKFCPNCNTHTIHKEIK 79          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: D1J7B7_ECTSI (50S ribosomal protein L33, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.050e-25
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+CV+CK    N   + +S +K+ YTTTKNRRNTP+RL LKK+CPNCN+HTLQKEIK
Sbjct:    1 MAKNKGARIIITLRCVDCKKTTTN-NGDKKSSRKIDYTTTKNRRNTPDRLVLKKYCPNCNIHTLQKEIK 68          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0F6U4_AKKLU (Ribosomal protein L33 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F6U4_AKKLU)

HSP 1 Score: 97.4 bits (241), Expect = 3.610e-25
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNI---QINS----RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+C +CK   NN+   + NS    +S++K+ YTTTKNRRNTP+RLELKKFCPNCN HT QKEIK
Sbjct:    1 MAKNKGARIIITLRCTQCKKGTNNVGNSENNSNQTKKSQRKIDYTTTKNRRNTPDRLELKKFCPNCNSHTQQKEIK 76          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0JZM8_9PHAE (Ribosomal protein L33 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZM8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.610e-25
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKG RI+ITL+C  CK      ++NS       + +KK+ YTTTKNRRNTP+RLELKKFCPNCN HTLQKEIK
Sbjct:    1 MAKNKGVRIVITLRCTNCKKSAEKRELNSNQGLTDTKRKKKIDYTTTKNRRNTPDRLELKKFCPNCNSHTLQKEIK 76          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A6B7EV79_9PHAE (50S ribosomal protein L33 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV79_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.870e-25
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            M KNKGARI+ITL+C +CK   +N +   R  KK+ YTTTKNRRNTP+RLE+KK+CPNCNLHTL KEIK
Sbjct:    1 MPKNKGARIIITLRCQDCKK-NSNTEDQKRKSKKIDYTTTKNRRNTPDRLEVKKYCPNCNLHTLHKEIK 68          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A5B9RCQ8_9PHAE (50S ribosomal protein L33, chloroplastic n=4 Tax=Laminariales TaxID=2886 RepID=A0A5B9RCQ8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.920e-25
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGNN---IQINS-------RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+C  CK   N      INS       +S+KK+ YTTTKNRRNTP+RLELKKFCPNCN HT QKEIK
Sbjct:    1 MAKNKGARIIITLRCTNCKKTSNTNGKTDINSSQGELAKKSQKKIDYTTTKNRRNTPDRLELKKFCPNCNSHTQQKEIK 79          
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Match: A0A8F0F8H0_MACPY (Ribosomal protein L33 n=2 Tax=Macrocystis TaxID=35121 RepID=A0A8F0F8H0_MACPY)

HSP 1 Score: 96.7 bits (239), Expect = 7.920e-25
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 MAKNKGARILITLKCVECKDIGN-----NIQINS-----RSRKKVSYTTTKNRRNTPNRLELKKFCPNCNLHTLQKEIK 207
            MAKNKGARI+ITL+C  CK I N     NI  N      +SRKK+ YTTTKNRRNTP+RLELKKFCP CN HT QKE+K
Sbjct:    1 MAKNKGARIIITLRCTNCKKIVNTNGKANINSNQGATAKKSRKKIDYTTTKNRRNTPDRLELKKFCPYCNTHTYQKEVK 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46815.11658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JXH9_9PHAE7.030e-3379.71Ribosomal protein L33 n=1 Tax=Protohalopteris sp. ... [more]
A0A7T8JK09_SCYLO3.980e-2765.3850S ribosomal protein L33, chloroplastic n=3 Tax=S... [more]
A0A8F0FAU0_9PHAE6.780e-2667.09Ribosomal protein L33 n=2 Tax=Ecklonia TaxID=10540... [more]
A0A8F4XLG6_9PHAE9.640e-2667.09Ribosomal protein L33 n=3 Tax=Sargassum TaxID=3015... [more]
D1J7B7_ECTSI2.050e-2569.5750S ribosomal protein L33, chloroplastic n=2 Tax=E... [more]
A0A8F0F6U4_AKKLU3.610e-2567.11Ribosomal protein L33 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0JZM8_9PHAE3.610e-2564.47Ribosomal protein L33 n=1 Tax=Desmarestia aculeata... [more]
A0A6B7EV79_9PHAE5.870e-2568.1250S ribosomal protein L33 n=1 Tax=Cladosiphon okam... [more]
A0A5B9RCQ8_9PHAE7.920e-2565.8250S ribosomal protein L33, chloroplastic n=4 Tax=L... [more]
A0A8F0F8H0_MACPY7.920e-2565.82Ribosomal protein L33 n=2 Tax=Macrocystis TaxID=35... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46815contigH-paniculata_contig46815:488..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.4
Seed ortholog evalue9.1e-14
Seed eggNOG ortholog321332.CYB_1634
Preferred namerpmG
KEGG koko:K02913
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the bacterial ribosomal protein bL33 family
EggNOG OGs1G96P@1117,1H1JD@1129,COG0267@1,COG0267@2
COG Functional cat.J
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.3383012-CDS-H-paniculata_contig46815:487..6971622930394.3383012-CDS-H-paniculata_contig46815:487..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46815 488..697 +
1691481271.8353827-CDS-H-paniculata_contig46815:487..6971691481271.8353827-CDS-H-paniculata_contig46815:487..697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46815 488..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46815.11658.1prot_H-paniculata_contig46815.11658.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46815 488..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46815.11658.1

>prot_H-paniculata_contig46815.11658.1 ID=prot_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MAKNKGARILITLKCVECKDIGNNIQINSRSRKKVSYTTTKNRRNTPNRL
ELKKFCPNCNLHTLQKEIK*
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mRNA from alignment at H-paniculata_contig46815:488..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46815.11658.1 ID=mRNA_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig46815:488..697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAAAATAAAGGAGCTCGAATTTTAATAACTTTAAAATGTGTAGA ATGTAAAGATATAGGAAATAATATTCAAATTAATTCAAGAAGTCGAAAAA AAGTTAGTTATACAACGACAAAGAATCGTAGAAATACTCCAAATAGGTTA GAACTAAAAAAATTTTGTCCAAATTGTAATTTACATACCCTTCAAAAAGA AATAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig46815:488..697+

>mRNA_H-paniculata_contig46815.11658.1 ID=mRNA_H-paniculata_contig46815.11658.1|Name=mRNA_H-paniculata_contig46815.11658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig46815:488..697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAAAATAAAGGAGCTCGAATTTTAATAACTTTAAAATGTGTAGA
ATGTAAAGATATAGGAAATAATATTCAAATTAATTCAAGAAGTCGAAAAA
AAGTTAGTTATACAACGACAAAGAATCGTAGAAATACTCCAAATAGGTTA
GAACTAAAAAAATTTTGTCCAAATTGTAATTTACATACCCTTCAAAAAGA
AATAAAATAAATGGCAAAAAATAAAGGAGCTCGAATTTTAATAACTTTAA
AATGTGTAGAATGTAAAGATATAGGAAATAATATTCAAATTAATTCAAGA
AGTCGAAAAAAAGTTAGTTATACAACGACAAAGAATCGTAGAAATACTCC
AAATAGGTTAGAACTAAAAAAATTTTGTCCAAATTGTAATTTACATACCC
TTCAAAAAGAAATAAAATAA
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