mRNA_H-paniculata_contig4680.11656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4680.11656.1
Unique NamemRNA_H-paniculata_contig4680.11656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4680.11656.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.820e-15
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 2 
Query:   80 WLITTSVYLVLCMRHAVCQRIIL---DTFDNISTEDLEVGGACVNGCTREVVKSVAAVWGETNCELRVQNLLDHIEQDVEGGTLNIVHSCFDQNQNLQYQ-VGGCLACVSMCL 406
            W I  +  L++      C  ++     T D I   D+E GG C  GC R VV +     GE +CELRV+NLLDH ++DV GG+LN+VHSC +   +L YQ  G CL   S+C+
Sbjct:   32 WSIARAALLLVAFGAPACLGVLRRLGSTSDAIVAADIEPGGPCDAGCVRTVVNAEVYAAGEVDCELRVENLLDHTDEDVLGGSLNVVHSCTNAAGDLLYQDQGECL--YSVCV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4680.11656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLX8_9PHAE1.820e-1541.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4680contigH-paniculata_contig4680:11427..11898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.0691192-UTR-H-paniculata_contig4680:11426..114541622930394.0691192-UTR-H-paniculata_contig4680:11426..11454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4680 11427..11454 +
1691481271.7349389-UTR-H-paniculata_contig4680:11426..114541691481271.7349389-UTR-H-paniculata_contig4680:11426..11454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4680 11427..11454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.095941-CDS-H-paniculata_contig4680:11454..118981622930394.095941-CDS-H-paniculata_contig4680:11454..11898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4680 11455..11898 +
1691481271.7469761-CDS-H-paniculata_contig4680:11454..118981691481271.7469761-CDS-H-paniculata_contig4680:11454..11898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4680 11455..11898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4680.11656.1prot_H-paniculata_contig4680.11656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4680 11455..11898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4680.11656.1

>prot_H-paniculata_contig4680.11656.1 ID=prot_H-paniculata_contig4680.11656.1|Name=mRNA_H-paniculata_contig4680.11656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MVEGNESCCSRRVRELRWLITTSVYLVLCMRHAVCQRIILDTFDNISTED
LEVGGACVNGCTREVVKSVAAVWGETNCELRVQNLLDHIEQDVEGGTLNI
VHSCFDQNQNLQYQVGGCLACVSMCLQCGYQSAGSMNVVRRVGRGAVT
back to top

mRNA from alignment at H-paniculata_contig4680:11427..11898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4680.11656.1 ID=mRNA_H-paniculata_contig4680.11656.1|Name=mRNA_H-paniculata_contig4680.11656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at H-paniculata_contig4680:11427..11898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGGATACTCTCAGCCACGTAGGTATATGGTGGAAGGTAACGAAAGCT
GCTGTAGTCGTCGCGTTCGAGAGCTGAGATGGCTCATTACCACCTCTGTA
TACCTCGTGCTCTGCATGCGACATGCGGTGTGCCAGCGAATAATACTGGA
TACATTCGACAACATATCCACGGAAGACCTAGAGGTGGGCGGGGCATGCG
TAAACGGGTGCACGAGAGAGGTGGTGAAGTCCGTGGCCGCTGTGTGGGGA
GAGACGAACTGTGAACTGCGCGTGCAAAATCTGCTTGACCATATCGAGCA
GGATGTGGAGGGCGGCACTCTGAATATCGTTCACAGTTGCTTCGATCAGA
ATCAGAACTTGCAGTATCAGGTAGGCGGTTGCCTCGCGTGTGTGTCCATG
TGCCTGCAATGTGGTTATCAGTCGGCTGGCTCAATGAATGTGGTAAGGCG
TGTTGGGCGAGGTGCTGTCACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4680:11427..11898+

>mRNA_H-paniculata_contig4680.11656.1 ID=mRNA_H-paniculata_contig4680.11656.1|Name=mRNA_H-paniculata_contig4680.11656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig4680:11427..11898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAAGGTAACGAAAGCTGCTGTAGTCGTCGCGTTCGAGAGCTGAG
ATGGCTCATTACCACCTCTGTATACCTCGTGCTCTGCATGCGACATGCGG
TGTGCCAGCGAATAATACTGGATACATTCGACAACATATCCACGGAAGAC
CTAGAGGTGGGCGGGGCATGCGTAAACGGGTGCACGAGAGAGGTGGTGAA
GTCCGTGGCCGCTGTGTGGGGAGAGACGAACTGTGAACTGCGCGTGCAAA
ATCTGCTTGACCATATCGAGCAGGATGTGGAGGGCGGCACTCTGAATATC
GTTCACAGTTGCTTCGATCAGAATCAGAACTTGCAGTATCAGGTAGGCGG
TTGCCTCGCGTGTGTGTCCATGTGCCTGCAATGTGGTTATCAGTCGGCTG
GCTCAATGAATGTGGTAAGGCGTGTTGGGCGAGGTGCTGTCACCATGGTG
GAAGGTAACGAAAGCTGCTGTAGTCGTCGCGTTCGAGAGCTGAGATGGCT
CATTACCACCTCTGTATACCTCGTGCTCTGCATGCGACATGCGGTGTGCC
AGCGAATAATACTGGATACATTCGACAACATATCCACGGAAGACCTAGAG
GTGGGCGGGGCATGCGTAAACGGGTGCACGAGAGAGGTGGTGAAGTCCGT
GGCCGCTGTGTGGGGAGAGACGAACTGTGAACTGCGCGTGCAAAATCTGC
TTGACCATATCGAGCAGGATGTGGAGGGCGGCACTCTGAATATCGTTCAC
AGTTGCTTCGATCAGAATCAGAACTTGCAGTATCAGGTAGGCGGTTGCCT
CGCGTGTGTGTCCATGTGCCTGCAATGTGGTTATCAGTCGGCTGGCTCAA
TGAATGTGGTAAGGCGTGTTGGGCGAGGTGCTGTCACC
back to top