mRNA_H-paniculata_contig4583.11477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4583.11477.1
Unique NamemRNA_H-paniculata_contig4583.11477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 8.270e-128
Identity = 214/360 (59.44%), Postives = 253/360 (70.28%), Query Frame = 1
Query:    1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGR----------------NSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAALFSFESTNARALEQRQHPQHQRYHRSSPSNIVELTLRNARE 1032
            MLMDACGC+LP+EGRRADVSGRGL  VV+ED+++FVRLQ VDAGDNS+PF+SF  LPRLEEL +PCN+IR +  DGR                N Y +L+RLDLSYN+LS  ALS L  LP+L DLDLTCNGL +LP+A+    +LQKLSLERNQLESD V +VLS LP LRELNLAFNYFTGI+   +  E AFPLLE LDLGFN+I  ++DV  ++L ERLQR+ILYGNPLAGPTGED  GLCVE L+ ++DRIR  + S PIEVITE+PR R +TRG          RPY D G+TMVD+G LP A  FR +GN  LF FE   + +      P           NIVE TLR ARE
Sbjct:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDI--DGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASCPIEVITELPRIR-QTRGXXXXXXXXXXRPYCDTGVTMVDEGCLPPASTFRDSGNRTLFRFERKPSGSSGDGDAPD---------DNIVEATLRLARE 348          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA)

HSP 1 Score: 251 bits (640), Expect = 5.100e-73
Identity = 149/323 (46.13%), Postives = 194/323 (60.06%), Query Frame = 1
Query:    4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRN--SYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIG---ITMVDDGRLPSALEFRAAGNAALFSFE---STNARALE 948
            +++  G +LP+  RR+D+SG     VVQ+DL YF +LQ +DAGDNS+    FA L +L EL + CN I           SY  L RLDLSYN LS  A++ L QLP L  LDL+CNGLT LP  +  L  L+ L LERNQLE   V+  L+TLP LREL+LAFNYF  I              E LDL FNYI  Q D   L+LL +L R+ILYGNPL GP+GED  G+ +E L + ADR R GW    +E ITE+PR +H+  G   +R    RR Y ++    IT+V +  +P++ + +A GN A+F FE   S NA A++
Sbjct:  162 ILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPASYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADRARDGWSVPLLEFITEMPRPKHERAGLKNSR----RRMYCEMTRAPITLVSEAPVPASRDLKATGNKAVFKFEEARSDNAAAMD 466          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK)

HSP 1 Score: 236 bits (601), Expect = 9.350e-68
Identity = 138/302 (45.70%), Postives = 177/302 (58.61%), Query Frame = 1
Query:    4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPE--TVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGN 903
            L+ A G + P+E RRAD SG+G   V   DL YFVRL  +D  +N +  E F RLPRL++L +  N +  +    +  Y  L RLDLSYN +   AL  L  LP L  LDLT NGL ELP A+     L+ L+LE NQ + + +  VL+ +P LREL LAFN+   I   P     E  FP L+ LDL FNY++ + DV  L  L  L R+ILYGNPLAGPTGEDP G CV   ++ A+R R GW + P+EV+ E PR+R   R          RRPY D+   +VD+  LP+  EFR AGN
Sbjct:  105 LLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLTAL--GPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGE-IPLVLAEIPKLRELYLAFNF---IDTAPAECAAEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAERARQGWSARPLEVVLEQPRRRAAER--------VNRRPYRDVETVVVDEAPLPTGGEFREAGN 392          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.000e-52
Identity = 121/323 (37.46%), Postives = 165/323 (51.08%), Query Frame = 1
Query:    1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNS-IPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGV------------------INVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAAL 912
            +L+DACG E P+EG RADVSGR    V   DL YF  L  VDA DN  +P E F  LPRL++L    N+         + + +L  LDLSYN  + + +S L  +P L DLDLT NGL ELP        L+KL LERN+L+ D                    +    T+ A+ E        T +  T    E     L  LDL  N+I  + D++ L +L +L+++ LYGNPL G TGEDP G  V  L+  A + R GW +  ++V TE+PRKR      G   G    R +  IG+  + +  +P+A +FR  G+ AL
Sbjct:  127 LLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSWSVCSSVSEDWFPRLLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDAMAEA-------TSLDHTEILAE-----LVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQQRDGWTARHLDVTTEVPRKRPNRGTAGAAAGAKCDRRFERIGVQRIAEAPIPTAAQFREKGHQAL 437          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A482S2K3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2K3_9ARCH)

HSP 1 Score: 107 bits (266), Expect = 6.080e-23
Identity = 58/167 (34.73%), Postives = 99/167 (59.28%), Query Frame = 1
Query:    4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGI 504
            L++  G   P + +   +S + L+ VV +DLTYF  L  +D  +N +P   F  LP+L EL + CN+I  V +     + +L  LDLSYN+++ ++++ +  LP L +LDL+ N L  LP  +     L+K+ LE N+++ +GV   LST+P +R ++L+ N+ + I
Sbjct:   79 LLEKAGIHFPEDLQAITLSDKNLFTVVDDDLTYFTELLYLDVSENRLPLYPFGALPKLRELRLTCNHI--VDLGELYGFSQLLYLDLSYNSINVDSVNEIMALPVLKELDLSGNTLKTLPPDLSGFGALEKIILEYNKMDDNGVFMSLSTIPQIRYVDLSHNFLSVI 243          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S2Y223_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y223_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.560e-22
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  601 LILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAALF 915
            L  L ++ RIILYGNP+AGP+GEDP G CV+  +  A++ RHGW+  P+EV+ E PR++   R          RRPY D+   +V++  +PSA +F+ AGN  L+
Sbjct:    2 LAKLPQVTRIILYGNPIAGPSGEDPSGACVQGFLATAEQFRHGWIERPLEVVLEEPRQKVSER--------VNRRPYRDVETVVVNEKPIPSAAQFKEAGNKRLY 98          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: UPI001C890EE4 (X-ray radiation resistance-associated protein 1 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C890EE4)

HSP 1 Score: 101 bits (252), Expect = 1.750e-19
Identity = 84/312 (26.92%), Postives = 131/312 (41.99%), Query Frame = 1
Query:   25 ELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLS-------------LLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFT--------------PETV--------------------------------EYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHK 783
            + P++    ++SG+ L  V  ED   F  +  ++A DN +P E FAR P L EL +  N++  + +   + + KL+ LDLS+NNL+  ++  LG LP L  L LT N L  LPL +   S              L+ L L+ N+L S  V   L+ L  LR LNL  NY +G+ F               P+ +                                   FP L  L+L  N I+ +  +  + L  +L  ++++ NPL      DPP L        A +I     + P      +P+++ K
Sbjct:   88 DKPSDLCSVNISGQRLQTVKPEDFHEFDNMAYINASDNHLPLEPFARFPALRELELSLNSVHDLEIHAED-FQKLEVLDLSFNNLTGESILNLGLLPHLKVLHLTGNQLEMLPLNIAGTSPGENTEQSVSLFQTLEVLMLDDNKLSSPEVFMSLANLKRLRHLNLQSNYISGVPFLEQMATLPDAQTGIMPQNIGQKEDKARTSLEMHAGASQYYQRKDNVCVLGLHLPFPELRHLNLANNEIAEEEALLPVALFSKLSELVIHSNPLTTQRSGDPPMLTCFLQDKLAIKITRKKTTNPTRRHIILPKRKEK 398          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S0N1X0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1X0_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 2.230e-19
Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 1
Query:    4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIP-FESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELP---LAVGHLSLLQKLSLE-RNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEY-AFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLA 654
            L+ ACG ELP   +   + G+    V  EDL +FV LQ +D GDN +P     A LP L  L + CN++  ++++   S+  L+ L+L YN L A+AL  L  LP L +LD++ N +   P           L+ L L  +    +  V+  L  LP LR L +  N      F P+ V    FP L  LDL  N +  ++D+   +    L++++L+G PLA
Sbjct:   85 LVGACGVELPEAVQTVSLMGKNYVDVEVEDLHHFVCLQDLDVGDNQLPGMHCLAELPVLRTLKMQCNSLSTLQIEP-GSFHTLETLELCYNCLGADALLQLATLPNLRELDVSFNCINRPPSEQFPSEAFPALETLHLGGQTPKMAPSVVYRLGHLPRLRALRVPNNNIQS--FNPDKVRPDMFPALGLLDLADNRVEVEDDIVAFVQCPELEKVVLWGTPLA 304          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S2S8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8V5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.190e-19
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  457 PALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKR 777
            P L+EL+L FNY T        V+  FP L TL+L FNYI+ ++D+  ++ L +L+ +++YGNPL GPTGEDP G  +E L      +R G+ +  ++++TE P+K+
Sbjct:    1 PQLQELHLGFNYLTVFPRAATGVD-RFPCLHTLNLAFNYIASEDDLVPVVHLHKLEMLVIYGNPLLGPTGEDPSGTSIEYLAQCLLDVRTGYSTRALDILTEKPKKK 106          
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: UPI0007B7E65E (LOW QUALITY PROTEIN: X-ray radiation resistance-associated protein 1-like n=3 Tax=Sinocyclocheilus TaxID=75365 RepID=UPI0007B7E65E)

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-16
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 1
Query:    1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGH---------------LSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHF 510
            + +  C  + P++    ++SG+ L  V  E L  F ++  ++A DN +  E FAR P L EL +  N++  + +   + + KL+ LDLS+NNL+  ++  LG LP L  L LT N L  LPL +                    L+ L L+ N+L S GV   L+ L  LR LNL  NY +G+ F
Sbjct:   82 LFLSLCCVDKPSDLCSVNISGQRLQTVRLEGLEQFDKVAYINASDNHLTLEPFARFPALRELELSLNSLHNLEIHAED-FQKLEVLDLSFNNLTGESIINLGLLPRLKVLHLTGNRLQMLPLNMAEPCTYSGENTERGVLLFQTLEVLMLDDNKLSSPGVFMSLANLKRLRHLNLQGNYISGVPF 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K0_ECTSI8.270e-12859.44Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836C9W6_9STRA5.100e-7346.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XTX8_HETAK9.350e-6845.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4E570_9STRA2.000e-5237.46Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A482S2K3_9ARCH6.080e-2334.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2Y223_9STRA2.560e-2243.81Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI001C890EE41.750e-1926.92X-ray radiation resistance-associated protein 1 n=... [more]
A0A7S0N1X0_9CHLO2.230e-1933.18Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S2S8V5_9STRA4.190e-1941.12Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI0007B7E65E2.000e-1633.51LOW QUALITY PROTEIN: X-ray radiation resistance-as... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4583contigH-paniculata_contig4583:6402..9221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.3
Seed ortholog evalue5.5e-106
Seed eggNOG ortholog2880.D7G8K0
KEGG koko:K08460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_003290.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Exons4
Model size1263
Cds size1263
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4583.11477.1prot_H-paniculata_contig4583.11477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4583 6402..9221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930371.4138203-CDS-H-paniculata_contig4583:6401..65831622930371.4138203-CDS-H-paniculata_contig4583:6401..6583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 6402..6583 -
1691481261.8774278-CDS-H-paniculata_contig4583:6401..65831691481261.8774278-CDS-H-paniculata_contig4583:6401..6583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 6402..6583 -
1622930371.425638-CDS-H-paniculata_contig4583:7078..74431622930371.425638-CDS-H-paniculata_contig4583:7078..7443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 7079..7443 -
1691481261.8898044-CDS-H-paniculata_contig4583:7078..74431691481261.8898044-CDS-H-paniculata_contig4583:7078..7443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 7079..7443 -
1622930371.4375527-CDS-H-paniculata_contig4583:7906..81811622930371.4375527-CDS-H-paniculata_contig4583:7906..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 7907..8181 -
1691481261.897605-CDS-H-paniculata_contig4583:7906..81811691481261.897605-CDS-H-paniculata_contig4583:7906..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 7907..8181 -
1622930371.4555228-CDS-H-paniculata_contig4583:8780..92211622930371.4555228-CDS-H-paniculata_contig4583:8780..9221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 8781..9221 -
1691481261.9068682-CDS-H-paniculata_contig4583:8780..92211691481261.9068682-CDS-H-paniculata_contig4583:8780..9221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4583 8781..9221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4583.11477.1

>prot_H-paniculata_contig4583.11477.1 ID=prot_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=421bp
MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPF
ESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSA
LGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLS
TLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEG
LILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIE
VITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAG
NAALFSFESTNARALEQRQHPQHQRYHRSSPSNIVELTLRNARERCKTRH
MPKKHQGAHSTNTAGLGTVDAVLTSMGVGMDQMILENRAKERRDAALSSR
RPGLSSIIRTVNAVLDENEY*
back to top

mRNA from alignment at H-paniculata_contig4583:6402..9221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4583.11477.1 ID=mRNA_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2820bp|location=Sequence derived from alignment at H-paniculata_contig4583:6402..9221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATGGACGCTTGCGGTTGCGAGCTACCGAACGAGGGCCGCAGGGC GGACGTCAGTGGCAGGGGCCTGTACGGGGTAGTGCAGGAAGATTTAACAT ATTTCGTTCGTCTGCAGGTGGTCGACGCAGGTGACAACTCTATACCCTTT GAGAGCTTCGCTCGTCTGCCGCGGTTAGAGGAGCTTCTAATTCCATGCAA CAACATCCGCGGTGTTCGTGTAGATGGGAGAAATAGCTACTGCAAACTCC AGCGCCTCGATTTGTCGTACAACAATCTCAGCGCGAACGCGCTGTCGGCG CTGGGGCAGTTGCCCGCTCTGCTCGATCTAGATTTGACTTGCAACGGCCT TACGGAGCTTCCGCTAGCCGTGGGGCATCTATCGTTACTTCAGAAGCTGT CGCTGGAGCGCAATCAGCTGGAAAGTGATGGCGTGATCAATGTGAGCTTC ACGCCATTACAAAGGAATAGTCAAGGATGTACATAAAAACTATTTATACG GGTGTCCCGCGGGCGGATGGAATTTGTGCACTAAAGGTACCGACTAATCA GCTGAAAATGACGAGGGAGGTACAGCTGTACCTGCAAGTTATTCAGCTCA CAACATTCTGTTTGTGTGAACCTCGACGACTTAGTGCTCTATAAATTAAC TGCCAGAACTTGAAATTGGACATTCGAAGGCGGTACTATTTGAATTTTGC GGAAACTATTTGTGTAGAGTAAACGCCCGCGGGTTTGCAGTTATCGAAGT TTTATCCTCGTCCGAGGGAGCGCAAATAATCGGACCCGCAACAAAAGGAG CCGTCAGTAAGCGACCTTGGCGACTCCTCTGGCTGTCCTCCATTGTAACT TGTATCATGTGGGGGCTTCTTGCAACTCAACAGTGCTCTTCGAGTTTTCC ACTAGCAATAGTTACTACACCCAAGGCGTGACCGCACAGTTTTACCCCGT GTTTACACCTGACTCCACTTTGTACTCACTACGGACGACCTTTCCCTCTA TCCCTCCCAATTCTACGTCAACGTTTTGTCGGCGTGCCAGGTGCTCTCTA CACTGCCCGCCCTGCGGGAGCTCAACCTCGCCTTTAATTATTTCACGGGA ATACATTTTACACCGGAGACGGTAGAGTACGCGTTTCCTCTGCTAGAGAC ACTGGACCTGGGTTTCAACTATATCAGCCACCAGAATGACGTGGAAGGGT TGATTTTGTTGGAAAGATTGCAAAGGATAATACTATACGGAAATCCGCTC GCAGGCCCGACGGGCGAAGATCCACCGGGTTTGTGCGTAGAAGCTCTCAT TAACAAGGCAGACAGGTACGCCGCCGATATACTGTAACAAAATAACCCTT TCAAGCCTGTATTGCTTCTCGTGTGTACACTTCTCCGTACTTGTATACCG TTTCAGAGGAAGTAATGCCAGTGATCGCTTCAGAGGGGAGAGGAGATCTA GAGTTTTGGGTCACCGAGTCTTCCCCCCCCCCTCAGCCAACGTGACTACA CCTATCCAGTCGAGGTTTCTATTCCTTGCGTTTATTTATTTATTTATTTC ACGGGTGATGTTCAAGAGTGTGGCTATGAAATGCCCAGCTCCTCTCCAGA TTTTTACTTTACCTAAGCATCACCGGCATATCATCCATGCTGCCGTTTAA AGATCTAACCTCGCCTAATTTGTGTCTGGCATCCACCCATCCACATGCCT GCCCGCCTACTCACCCACCGTCTTACACCTCCATATTATCAACTCACCGA CTATATCCATTTTGGGGGGAATACGCAGAATTCGACATGGTTGGGTAAGC GGTCCGATCGAGGTAATCACAGAGATCCCCCGGAAACGACATAAAACTCG CGGTGGCGGTGGCACCAGAGGTGTCAGCGGTCGACGCCCGTACAGCGACA TTGGCATCACCATGGTAGACGACGGAAGGCTACCATCCGCGCTCGAGTTC CGCGCCGCTGGCAATGCGGCGCTCTTCAGTTTCGAGTCGACGAATGCGCG AGCACTCGAGCAACGCCAGCACCCGCAACACCAAAGGTACCATCGATCGT CGCCCTCGAACATCGTCGAACTGACGTTGCGCAACGCGCGGGAGCGCTGC AAGACCCGCCACATGCCCAAGAAACATCAGGGCGCTCACAGCAGTAGTAG GGATCAAGTTGACACATTTTTGACCGGGGTGGAGAGGCACGAAAATGAAA TCGAAACGCAACATCGGGACGGGATCTTCCCGCACGAGGATGGACAGGAG AGCGACAACCACAAGGATGAAGCCGAGAGGAGAGGTGTTGCCGGACTCGA TGCAGCTGCCGCCTCCACGTTAGGGAGCGATGGGATGTCTACGCGGCTTC TGCGGGGACCCGTAGATCCCATCGTCCGGGGCGACCCCGTCAAGTTAAGG ATGGCGCTCACCGCACTACGGTACACCCTCAAGCACCCCGTAACTTCGTC CTTGGACATTATGCCTCTGAATGACGGCGGTGGTGGCCGTGGAAAAACTA TGGCAAGAGGCAAGGACGTCGGGATAGCTCGAAAAACCGAGGCAGCGCGT GTGCGTCAGCTTCCGCGTCGACCGTACCAATTACTTAAAACCCAACAAGA GCGCGTCGGCGACATAATTTGCGGTGGGTCACGGACAGCAAATACTGCGG GTTTGGGTACGGTTGACGCAGTGTTGACTTCGATGGGAGTGGGGATGGAC CAGATGATACTTGAGAACCGAGCTAAGGAGCGGCGAGATGCAGCTCTGTC TTCGAGGCGACCTGGCCTGTCGTCCATCATCCGAACCGTCAACGCCGTCC TGGATGAAAACGAGTATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4583:6402..9221-

>mRNA_H-paniculata_contig4583.11477.1 ID=mRNA_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at H-paniculata_contig4583:6402..9221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATGGACGCTTGCGGTTGCGAGCTACCGAACGAGGGCCGCAGGGC
GGACGTCAGTGGCAGGGGCCTGTACGGGGTAGTGCAGGAAGATTTAACAT
ATTTCGTTCGTCTGCAGGTGGTCGACGCAGGTGACAACTCTATACCCTTT
GAGAGCTTCGCTCGTCTGCCGCGGTTAGAGGAGCTTCTAATTCCATGCAA
CAACATCCGCGGTGTTCGTGTAGATGGGAGAAATAGCTACTGCAAACTCC
AGCGCCTCGATTTGTCGTACAACAATCTCAGCGCGAACGCGCTGTCGGCG
CTGGGGCAGTTGCCCGCTCTGCTCGATCTAGATTTGACTTGCAACGGCCT
TACGGAGCTTCCGCTAGCCGTGGGGCATCTATCGTTACTTCAGAAGCTGT
CGCTGGAGCGCAATCAGCTGGAAAGTGATGGCGTGATCAATATGTTGATG
GACGCTTGCGGTTGCGAGCTACCGAACGAGGGCCGCAGGGCGGACGTCAG
TGGCAGGGGCCTGTACGGGGTAGTGCAGGAAGATTTAACATATTTCGTTC
GTCTGCAGGTGGTCGACGCAGGTGACAACTCTATACCCTTTGAGAGCTTC
GCTCGTCTGCCGCGGTTAGAGGAGCTTCTAATTCCATGCAACAACATCCG
CGGTGTTCGTGTAGATGGGAGAAATAGCTACTGCAAACTCCAGCGCCTCG
ATTTGTCGTACAACAATCTCAGCGCGAACGCGCTGTCGGCGCTGGGGCAG
TTGCCCGCTCTGCTCGATCTAGATTTGACTTGCAACGGCCTTACGGAGCT
TCCGCTAGCCGTGGGGCATCTATCGTTACTTCAGAAGCTGTCGCTGGAGC
GCAATCAGCTGGAAAGTGATGGCGTGATCAATGTGCTCTCTACACTGCCC
GCCCTGCGGGAGCTCAACCTCGCCTTTAATTATTTCACGGGAATACATTT
TACACCGGAGACGGTAGAGTACGCGTTTCCTCTGCTAGAGACACTGGACC
TGGGTTTCAACTATATCAGCCACCAGAATGACGTGGAAGGGTTGATTTTG
TTGGAAAGATTGCAAAGGATAATACTATACGGAAATCCGCTCGCAGGCCC
GACGGGCGAAGATCCACCGGGTTTGTGCGTAGAAGCTCTCATTAACAAGG
CAGACAGGTGCTCTCTACACTGCCCGCCCTGCGGGAGCTCAACCTCGCCT
TTAATTATTTCACGGGAATACATTTTACACCGGAGACGGTAGAGTACGCG
TTTCCTCTGCTAGAGACACTGGACCTGGGTTTCAACTATATCAGCCACCA
GAATGACGTGGAAGGGTTGATTTTGTTGGAAAGATTGCAAAGGATAATAC
TATACGGAAATCCGCTCGCAGGCCCGACGGGCGAAGATCCACCGGGTTTG
TGCGTAGAAGCTCTCATTAACAAGGCAGACAGAATTCGACATGGTTGGGT
AAGCGGTCCGATCGAGGTAATCACAGAGATCCCCCGGAAACGACATAAAA
CTCGCGGTGGCGGTGGCACCAGAGGTGTCAGCGGTCGACGCCCGTACAGC
GACATTGGCATCACCATGGTAGACGACGGAAGGCTACCATCCGCGCTCGA
GTTCCGCGCCGCTGGCAATGCGGCGCTCTTCAGTTTCGAGTCGACGAATG
CGCGAGCACTCGAGCAACGCCAGCACCCGCAACACCAAAGGTACCATCGA
TCGTCGCCCTCGAACATCGTCGAACTGACGTTGCGCAACGCGCGGGAGCG
CTGCAAGACCCGCCACATGCCCAAGAAACATCAGGGCGCTCACAGCAAAT
TCGACATGGTTGGGTAAGCGGTCCGATCGAGGTAATCACAGAGATCCCCC
GGAAACGACATAAAACTCGCGGTGGCGGTGGCACCAGAGGTGTCAGCGGT
CGACGCCCGTACAGCGACATTGGCATCACCATGGTAGACGACGGAAGGCT
ACCATCCGCGCTCGAGTTCCGCGCCGCTGGCAATGCGGCGCTCTTCAGTT
TCGAGTCGACGAATGCGCGAGCACTCGAGCAACGCCAGCACCCGCAACAC
CAAAGGTACCATCGATCGTCGCCCTCGAACATCGTCGAACTGACGTTGCG
CAACGCGCGGGAGCGCTGCAAGACCCGCCACATGCCCAAGAAACATCAGG
GCGCTCACAGCACAAATACTGCGGGTTTGGGTACGGTTGACGCAGTGTTG
ACTTCGATGGGAGTGGGGATGGACCAGATGATACTTGAGAACCGAGCTAA
GGAGCGGCGAGATGCAGCTCTGTCTTCGAGGCGACCTGGCCTGTCGTCCA
TCATCCGAACCGTCAACGCCGTCCTGGATGAAAACGAGTATTGACAAATA
CTGCGGGTTTGGGTACGGTTGACGCAGTGTTGACTTCGATGGGAGTGGGG
ATGGACCAGATGATACTTGAGAACCGAGCTAAGGAGCGGCGAGATGCAGC
TCTGTCTTCGAGGCGACCTGGCCTGTCGTCCATCATCCGAACCGTCAACG
CCGTCCTGGATGAAAACGAGTATTGA
back to top