mRNA_H-paniculata_contig4583.11477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI) HSP 1 Score: 390 bits (1002), Expect = 8.270e-128 Identity = 214/360 (59.44%), Postives = 253/360 (70.28%), Query Frame = 1
Query: 1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGR----------------NSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAALFSFESTNARALEQRQHPQHQRYHRSSPSNIVELTLRNARE 1032
MLMDACGC+LP+EGRRADVSGRGL VV+ED+++FVRLQ VDAGDNS+PF+SF LPRLEEL +PCN+IR + DGR N Y +L+RLDLSYN+LS ALS L LP+L DLDLTCNGL +LP+A+ +LQKLSLERNQLESD V +VLS LP LRELNLAFNYFTGI+ + E AFPLLE LDLGFN+I ++DV ++L ERLQR+ILYGNPLAGPTGED GLCVE L+ ++DRIR + S PIEVITE+PR R +TRG RPY D G+TMVD+G LP A FR +GN LF FE + + P NIVE TLR ARE
Sbjct: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDI--DGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASCPIEVITELPRIR-QTRGXXXXXXXXXXRPYCDTGVTMVDEGCLPPASTFRDSGNRTLFRFERKPSGSSGDGDAPD---------DNIVEATLRLARE 348
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA) HSP 1 Score: 251 bits (640), Expect = 5.100e-73 Identity = 149/323 (46.13%), Postives = 194/323 (60.06%), Query Frame = 1
Query: 4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRN--SYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIG---ITMVDDGRLPSALEFRAAGNAALFSFE---STNARALE 948
+++ G +LP+ RR+D+SG VVQ+DL YF +LQ +DAGDNS+ FA L +L EL + CN I SY L RLDLSYN LS A++ L QLP L LDL+CNGLT LP + L L+ L LERNQLE V+ L+TLP LREL+LAFNYF I E LDL FNYI Q D L+LL +L R+ILYGNPL GP+GED G+ +E L + ADR R GW +E ITE+PR +H+ G +R RR Y ++ IT+V + +P++ + +A GN A+F FE S NA A++
Sbjct: 162 ILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPASYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADRARDGWSVPLLEFITEMPRPKHERAGLKNSR----RRMYCEMTRAPITLVSEAPVPASRDLKATGNKAVFKFEEARSDNAAAMD 466
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK) HSP 1 Score: 236 bits (601), Expect = 9.350e-68 Identity = 138/302 (45.70%), Postives = 177/302 (58.61%), Query Frame = 1
Query: 4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPE--TVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGN 903
L+ A G + P+E RRAD SG+G V DL YFVRL +D +N + E F RLPRL++L + N + + + Y L RLDLSYN + AL L LP L LDLT NGL ELP A+ L+ L+LE NQ + + + VL+ +P LREL LAFN+ I P E FP L+ LDL FNY++ + DV L L L R+ILYGNPLAGPTGEDP G CV ++ A+R R GW + P+EV+ E PR+R R RRPY D+ +VD+ LP+ EFR AGN
Sbjct: 105 LLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLTAL--GPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGE-IPLVLAEIPKLRELYLAFNF---IDTAPAECAAEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAERARQGWSARPLEVVLEQPRRRAAER--------VNRRPYRDVETVVVDEAPLPTGGEFREAGN 392
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.000e-52 Identity = 121/323 (37.46%), Postives = 165/323 (51.08%), Query Frame = 1
Query: 1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNS-IPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGV------------------INVLSTLPALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAAL 912
+L+DACG E P+EG RADVSGR V DL YF L VDA DN +P E F LPRL++L N+ + + +L LDLSYN + + +S L +P L DLDLT NGL ELP L+KL LERN+L+ D + T+ A+ E T + T E L LDL N+I + D++ L +L +L+++ LYGNPL G TGEDP G V L+ A + R GW + ++V TE+PRKR G G R + IG+ + + +P+A +FR G+ AL
Sbjct: 127 LLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSWSVCSSVSEDWFPRLLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDAMAEA-------TSLDHTEILAE-----LVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQQRDGWTARHLDVTTEVPRKRPNRGTAGAAAGAKCDRRFERIGVQRIAEAPIPTAAQFREKGHQAL 437
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A482S2K3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2K3_9ARCH) HSP 1 Score: 107 bits (266), Expect = 6.080e-23 Identity = 58/167 (34.73%), Postives = 99/167 (59.28%), Query Frame = 1
Query: 4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGI 504
L++ G P + + +S + L+ VV +DLTYF L +D +N +P F LP+L EL + CN+I V + + +L LDLSYN+++ ++++ + LP L +LDL+ N L LP + L+K+ LE N+++ +GV LST+P +R ++L+ N+ + I
Sbjct: 79 LLEKAGIHFPEDLQAITLSDKNLFTVVDDDLTYFTELLYLDVSENRLPLYPFGALPKLRELRLTCNHI--VDLGELYGFSQLLYLDLSYNSINVDSVNEIMALPVLKELDLSGNTLKTLPPDLSGFGALEKIILEYNKMDDNGVFMSLSTIPQIRYVDLSHNFLSVI 243
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S2Y223_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y223_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.560e-22 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 601 LILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHKTRGGGGTRGVSGRRPYSDIGITMVDDGRLPSALEFRAAGNAALF 915
L L ++ RIILYGNP+AGP+GEDP G CV+ + A++ RHGW+ P+EV+ E PR++ R RRPY D+ +V++ +PSA +F+ AGN L+
Sbjct: 2 LAKLPQVTRIILYGNPIAGPSGEDPSGACVQGFLATAEQFRHGWIERPLEVVLEEPRQKVSER--------VNRRPYRDVETVVVNEKPIPSAAQFKEAGNKRLY 98
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: UPI001C890EE4 (X-ray radiation resistance-associated protein 1 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C890EE4) HSP 1 Score: 101 bits (252), Expect = 1.750e-19 Identity = 84/312 (26.92%), Postives = 131/312 (41.99%), Query Frame = 1
Query: 25 ELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGHLS-------------LLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHFT--------------PETV--------------------------------EYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKRHK 783
+ P++ ++SG+ L V ED F + ++A DN +P E FAR P L EL + N++ + + + + KL+ LDLS+NNL+ ++ LG LP L L LT N L LPL + S L+ L L+ N+L S V L+ L LR LNL NY +G+ F P+ + FP L L+L N I+ + + + L +L ++++ NPL DPP L A +I + P +P+++ K
Sbjct: 88 DKPSDLCSVNISGQRLQTVKPEDFHEFDNMAYINASDNHLPLEPFARFPALRELELSLNSVHDLEIHAED-FQKLEVLDLSFNNLTGESILNLGLLPHLKVLHLTGNQLEMLPLNIAGTSPGENTEQSVSLFQTLEVLMLDDNKLSSPEVFMSLANLKRLRHLNLQSNYISGVPFLEQMATLPDAQTGIMPQNIGQKEDKARTSLEMHAGASQYYQRKDNVCVLGLHLPFPELRHLNLANNEIAEEEALLPVALFSKLSELVIHSNPLTTQRSGDPPMLTCFLQDKLAIKITRKKTTNPTRRHIILPKRKEK 398
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S0N1X0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1X0_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 2.230e-19 Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 1
Query: 4 LMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIP-FESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELP---LAVGHLSLLQKLSLE-RNQLESDGVINVLSTLPALRELNLAFNYFTGIHFTPETVEY-AFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLA 654
L+ ACG ELP + + G+ V EDL +FV LQ +D GDN +P A LP L L + CN++ ++++ S+ L+ L+L YN L A+AL L LP L +LD++ N + P L+ L L + + V+ L LP LR L + N F P+ V FP L LDL N + ++D+ + L++++L+G PLA
Sbjct: 85 LVGACGVELPEAVQTVSLMGKNYVDVEVEDLHHFVCLQDLDVGDNQLPGMHCLAELPVLRTLKMQCNSLSTLQIEP-GSFHTLETLELCYNCLGADALLQLATLPNLRELDVSFNCINRPPSEQFPSEAFPALETLHLGGQTPKMAPSVVYRLGHLPRLRALRVPNNNIQS--FNPDKVRPDMFPALGLLDLADNRVEVEDDIVAFVQCPELEKVVLWGTPLA 304
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: A0A7S2S8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8V5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.190e-19 Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 457 PALRELNLAFNYFTGIHFTPETVEYAFPLLETLDLGFNYISHQNDVEGLILLERLQRIILYGNPLAGPTGEDPPGLCVEALINKADRIRHGWVSGPIEVITEIPRKR 777
P L+EL+L FNY T V+ FP L TL+L FNYI+ ++D+ ++ L +L+ +++YGNPL GPTGEDP G +E L +R G+ + ++++TE P+K+
Sbjct: 1 PQLQELHLGFNYLTVFPRAATGVD-RFPCLHTLNLAFNYIASEDDLVPVVHLHKLEMLVIYGNPLLGPTGEDPSGTSIEYLAQCLLDVRTGYSTRALDILTEKPKKK 106
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Match: UPI0007B7E65E (LOW QUALITY PROTEIN: X-ray radiation resistance-associated protein 1-like n=3 Tax=Sinocyclocheilus TaxID=75365 RepID=UPI0007B7E65E) HSP 1 Score: 92.4 bits (228), Expect = 2.000e-16 Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 1
Query: 1 MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFESFARLPRLEELLIPCNNIRGVRVDGRNSYCKLQRLDLSYNNLSANALSALGQLPALLDLDLTCNGLTELPLAVGH---------------LSLLQKLSLERNQLESDGVINVLSTLPALRELNLAFNYFTGIHF 510
+ + C + P++ ++SG+ L V E L F ++ ++A DN + E FAR P L EL + N++ + + + + KL+ LDLS+NNL+ ++ LG LP L L LT N L LPL + L+ L L+ N+L S GV L+ L LR LNL NY +G+ F
Sbjct: 82 LFLSLCCVDKPSDLCSVNISGQRLQTVRLEGLEQFDKVAYINASDNHLTLEPFARFPALRELELSLNSLHNLEIHAED-FQKLEVLDLSFNNLTGESIINLGLLPRLKVLHLTGNRLQMLPLNMAEPCTYSGENTERGVLLFQTLEVLMLDDNKLSSPGVFMSLANLKRLRHLNLQGNYISGVPF 265 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4583.11477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4583.11477.1 >prot_H-paniculata_contig4583.11477.1 ID=prot_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=421bp MLMDACGCELPNEGRRADVSGRGLYGVVQEDLTYFVRLQVVDAGDNSIPFback to top mRNA from alignment at H-paniculata_contig4583:6402..9221- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4583.11477.1 ID=mRNA_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2820bp|location=Sequence derived from alignment at H-paniculata_contig4583:6402..9221- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4583:6402..9221- >mRNA_H-paniculata_contig4583.11477.1 ID=mRNA_H-paniculata_contig4583.11477.1|Name=mRNA_H-paniculata_contig4583.11477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at H-paniculata_contig4583:6402..9221- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |