mRNA_H-paniculata_contig4549.11417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4549.11417.1
Unique NamemRNA_H-paniculata_contig4549.11417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4549.11417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4549contigH-paniculata_contig4549:10447..11602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size930
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4549.11417.1prot_H-paniculata_contig4549.11417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4549 10447..11303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.2190404-CDS-H-paniculata_contig4549:10446..108761622930363.2190404-CDS-H-paniculata_contig4549:10446..10876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4549 10447..10876 -
1691481258.3695014-CDS-H-paniculata_contig4549:10446..108761691481258.3695014-CDS-H-paniculata_contig4549:10446..10876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4549 10447..10876 -
1622930363.240551-CDS-H-paniculata_contig4549:11103..113031622930363.240551-CDS-H-paniculata_contig4549:11103..11303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4549 11104..11303 -
1691481258.3800182-CDS-H-paniculata_contig4549:11103..113031691481258.3800182-CDS-H-paniculata_contig4549:11103..11303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4549 11104..11303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.2578166-UTR-H-paniculata_contig4549:11303..116021622930363.2578166-UTR-H-paniculata_contig4549:11303..11602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4549 11304..11602 -
1691481258.3931265-UTR-H-paniculata_contig4549:11303..116021691481258.3931265-UTR-H-paniculata_contig4549:11303..11602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4549 11304..11602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4549.11417.1

>prot_H-paniculata_contig4549.11417.1 ID=prot_H-paniculata_contig4549.11417.1|Name=mRNA_H-paniculata_contig4549.11417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MVDVRNEKCSLRGCSTRASYGVAGTKKAEFCARHAEDGMVNVLNKKCSHR
GCSTYALYGMAGTKTAEVLCTACRRRDGGRAEQEMLSPGLLYTCVVRGGG
DEKSRVLCATCQRRDGERAEQEMLPPGLLYRCVVRDGGHENGRVLCTACR
RRDGGRAEQEMLPPGLLYTSVVRGGGHEKSRVLCSACQRWDGERAEQEML
PPGLLYPCVV
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mRNA from alignment at H-paniculata_contig4549:10447..11602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4549.11417.1 ID=mRNA_H-paniculata_contig4549.11417.1|Name=mRNA_H-paniculata_contig4549.11417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-paniculata_contig4549:10447..11602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCAATTTTCGAAGGGATCACAACGGCGTTCTGGTCGCGAAGTGTT
GAGAGTTATCGCTACGAAGGTTCCAGCTCTATAGAAGAGCACGGTGCGGC
AGGCACGGGTGGTGCTTGAGTTACGCCCGTAGCCTTTGTCCTGAGTGGCA
CTAAAGAGGTGAACTCGTGTGGTTAGGATTGGAGGACAATGTTACGCCAG
CAGAGAAAGTGCTCCCAATAGGGCTACTCTACACAACCGTCGTACGGGGT
GGCGGGCACGAAAACGGCAGAGTTCTGTGCACGGCATATCGAAGACGGGA
TGGTGGACGTGCGGAACGAGAAATGCTCCCTCCGGGGCTGCTCTACACGT
GCGTCGTACGGGGTGGCGGGCACGAAAAAAGCAGAGTTCTGTGCGCGACA
TGCCGAAGACGGAATGGTGAACGTGCTGAACAAGAAATGTTCCCACCGGG
GCTGCTCTACATATGCGTTGTACGGGATGGCGGGCACGAAAACGGCAGAG
TTCTGTGCACGGCATGCCGAAGACGGGATGGTGGACGTGCGGAACAAGAA
ATGCTCCCTCCGGGGCTGCTCTACACGTGCGTCGTACGGGGTGGCGGGGA
CGAAAAAAGCAGAGTTCTGTGCGCGACATGCCGAAGACGTGATGGTGAAC
GTGCTGAACAAGAAATGTTCCCACCGGGGCTGCTCTACATATGCGTTGTA
CGGGATGGCGGGCACCAACACGGCAGAGTTCTGTGCACGGCATGCCGAAG
ACGGGATGGTGGACGTGCGGAACAAGAAATGCTCTCGCCGGGGCTGCTCT
ACACGTGCGTTGTACGGGGTGGCGGGGACGAAAAAAGCAGAGTTCTGTGC
GCGACATGCCAAAGACGGGATGGTGAACGTGCTGAACAAGAAATGCTTCC
ACCGGGGCTGCTCTACAGGTGCGTCGTACGGGATGGCGGGCACGAAAACG
GTAGAGTTCTGTGCACAGCATGCCGAAGACGGGATGGTGGACGTGCGGAA
CAAGAAATGCTCCCTCCGGGGCTGCTCTACACGTCCGTCGTACGGGGTGG
CGGGCACGAAAAAAGCAGAGTTCTGTGCTCGGCATGCCAAAGATGGGATG
GTGAACGTGCGGAACAAGAAATGCTTCCACCGGGGCTGCTCTACCCGTGC
GTCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4549:10447..11602-

>mRNA_H-paniculata_contig4549.11417.1 ID=mRNA_H-paniculata_contig4549.11417.1|Name=mRNA_H-paniculata_contig4549.11417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig4549:10447..11602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGACGTGCGGAACGAGAAATGCTCCCTCCGGGGCTGCTCTACACG
TGCGTCGTACGGGGTGGCGGGCACGAAAAAAGCAGAGTTCTGTGCGCGAC
ATGCCGAAGACGGAATGGTGAACGTGCTGAACAAGAAATGTTCCCACCGG
GGCTGCTCTACATATGCGTTGTACGGGATGGCGGGCACGAAAACGGCAGA
ATGGTGGACGTGCGGAACGAGAAATGCTCCCTCCGGGGCTGCTCTACACG
TGCGTCGTACGGGGTGGCGGGCACGAAAAAAGCAGAGTTCTGTGCGCGAC
ATGCCGAAGACGGAATGGTGAACGTGCTGAACAAGAAATGTTCCCACCGG
GGCTGCTCTACATATGCGTTGTACGGGATGGCGGGCACGAAAACGGCAGA
AGTTCTGTGCACGGCATGCCGAAGACGGGATGGTGGACGTGCGGAACAAG
AAATGCTCTCGCCGGGGCTGCTCTACACGTGCGTTGTACGGGGTGGCGGG
GACGAAAAAAGCAGAGTTCTGTGCGCGACATGCCAAAGACGGGATGGTGA
ACGTGCTGAACAAGAAATGCTTCCACCGGGGCTGCTCTACAGGTGCGTCG
TACGGGATGGCGGGCACGAAAACGGTAGAGTTCTGTGCACAGCATGCCGA
AGACGGGATGGTGGACGTGCGGAACAAGAAATGCTCCCTCCGGGGCTGCT
CTACACGTCCGTCGTACGGGGTGGCGGGCACGAAAAAAGCAGAGTTCTGT
GCTCGGCATGCCAAAGATGGGATGGTGAACGTGCGGAACAAGAAATGCTT
CCACCGGGGCTGCTCTACCCGTGCGTCGTAAGTTCTGTGCACGGCATGCC
GAAGACGGGATGGTGGACGTGCGGAACAAGAAATGCTCTCGCCGGGGCTG
CTCTACACGTGCGTTGTACGGGGTGGCGGGGACGAAAAAAGCAGAGTTCT
GTGCGCGACATGCCAAAGACGGGATGGTGAACGTGCTGAACAAGAAATGC
TTCCACCGGGGCTGCTCTACAGGTGCGTCGTACGGGATGGCGGGCACGAA
AACGGTAGAGTTCTGTGCACAGCATGCCGAAGACGGGATGGTGGACGTGC
GGAACAAGAAATGCTCCCTCCGGGGCTGCTCTACACGTCCGTCGTACGGG
GTGGCGGGCACGAAAAAAGCAGAGTTCTGTGCTCGGCATGCCAAAGATGG
GATGGTGAACGTGCGGAACAAGAAATGCTTCCACCGGGGCTGCTCTACCC
GTGCGTCGTA
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