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Homology
BLAST of mRNA_H-paniculata_contig4538.11399.1 vs. uniprot
Match: D8LPR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPR4_ECTSI) HSP 1 Score: 172 bits (437), Expect = 1.560e-42 Identity = 103/220 (46.82%), Postives = 130/220 (59.09%), Query Frame = 1
Query: 1 RCAGDFCETQSSRRHGVGA-------------VTPGRVTHARPEI-------------GDSAAAKAGNGKHDVEGEKAQEKEKQHVVGKRKHALAVEVPRTVLFRLVLNARVALLGWKASAADFAQMEKPIQLCSACYAVCYALERERIERTRKVIEEEATAAKALKKRKNYKPIGWKSRVQHELEESLGADRRIVSHIMENMQASAI----AAIPGGSR 570
RCAGDFCET + A V G + ++P G S + G G E E+ +VG+RKHAL+VE PRTVLFRLVLNAR ALL W+ SAA+F+ MEKP+QLCS CY VC +ER+RIE TR+ ++ E AAKA K R+N KP GWKSRVQHELEESL ADR +VS ++++ +A+A AA P G +
Sbjct: 165 RCAGDFCETHPDGQRQASADATGDKKGNRDNKVETGSLVVSQPSERARGRPVRNRGLEGASEKSSTGGGGXXXXXXDGTECEEDDIVGRRKHALSVETPRTVLFRLVLNARAALLRWRPSAAEFSMMEKPVQLCSVCYMVCSTIERDRIETTRRAMDAEEEAAKAGKARRNRKPPGWKSRVQHELEESLSADRHVVSRLIDSFEAAAAIAMAAAAPNGEK 384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1639 |
| Cds size | 1032 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4538.11399.1 >prot_H-paniculata_contig4538.11399.1 ID=prot_H-paniculata_contig4538.11399.1|Name=mRNA_H-paniculata_contig4538.11399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
MEKPIQLCSACYAVCYALERERIERTRKVIEEEATAAKALKKRKNYKPIG
WKSRVQHELEESLGADRRIVSHIMENMQASAIAAIPGGSRGGGDGTPCLT
GRKLPPRLSSSLTTPSSTVKTPTGYSCRTKSEQMLPLGYQDKTFFGVSGG
DDDDEGDHRGTELLISVGQDERTGGVLTSGLGIEEGVERKYSRGKRRQSS
KEEERNIGASSSNSKSRRGGDRNSSSNNNGRNKHDIRARRKAKERARRKQ
KISKGFIDDNDTKSAVDRNTNNTDNSDPPPGPITPLALSAPIITSEDGKP
GGCRYRVADDICGSAQNHDVLLLPVRPSPSTGLVVDVEGSKDN* back to topmRNA from alignment at H-paniculata_contig4538:10953..15395- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4538.11399.1 ID=mRNA_H-paniculata_contig4538.11399.1|Name=mRNA_H-paniculata_contig4538.11399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4443bp|location=Sequence derived from alignment at H-paniculata_contig4538:10953..15395- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGCGGGTGACTTTTGCGAGACTCAATCGTCTCGACGTCATGGAGT
AGGCGCAGTAACGCCGGGCAGAGTTACCCATGCGAGACCGGAGATCGGGG
ACAGTGCAGCAGCTAAAGCAGGCAATGGCAAACACGACGTCGAGGGCGAG
AAGGCACAGGAGAAGGAGAAGCAGCATGTTGTTGGAAAGCGCAAGCATGC
GCTAGCGGTGGAAGTCCCGCGCACCGTGCTCTTTCGCCTGGTGAAATATT
TGTCTCACAATTTTTGCTCCTCTTGGTGAATCTGAAGTGAAGCCTCAGCT
TTATTCACTGGAAACATCCTTTCTACTTGACTGAAAACCAGTAACGTTAC
CATGCTGGAATTTATGGGCCATTTTTTCCTGCAGCTATTACTGATGTTGA
CTTTATTTCATGATATGTTCATTCCAACATTCCTCCTCTAGCTTCTCTTC
ACTGCCAAGCACATTTTACAGCTATTAACAACGATCTCATTTCCTGTGTT
CCAACATATTTTGAGTTAGTTCAGGTCCGCTAGATGCTCTACCTTATTAC
TATTTCGCCAAATGCGAGTGATGGCTTGTGATAAGAACGGTATGACCAGA
TGTTGTAATCTTATTTTTAAACATGGACGCGGTCTCGGCGATACTCGTCC
CGCCCGTGTCTCGTGTGTGTCGGGACGACCTGTGACGTGTCGGAGTTTTT
TTGCACTTCGACCAAAACCACAATAACCGGGCTCAGGTGCAGTTTTCTCC
AGTTTCTTGTGCTGGCCCGTCGCTCCAGTTTGGTCATTTGCGAGTTTCAG
GTAGTGCGAGCTCGGCCACATAAGACTGTACCGGTTGCGTGAAAAAGGCC
TGCAAAAAAAAACACTTTTTTCCGTCGCAAAACCTGTATTTAGAAGTAGC
ATTTCATCGTTTTCCCCTATCAAACTTGCGACCATCACGATTGACCGTCG
AATTTATGAATTTCTCCCACTAGTCAAAAACAAAATTTCACGTGATTAGA
CGCAGTACTTGAAAGCTCATACTGGTGGTTGCACATTGGTACTATGACAA
TCGCACTACGAATATCAAAACTGGATGATGACCTCGTTGCGAGGCAACCC
CCGAAATCAGCTTACTCGTACATGTAACTTTCGCGATAGTATAGCAACGC
GTACTTCCTTTTTTGTATGCCCAGGTCCTGAACGCTCGAGTGGCCTTGTT
GGGGTGGAAGGCTTCTGCAGCCGACTTCGCTCAGATGGAGAAACCCATTC
AGCTTTGCTCGGCGTGCTACGCCGTGTGCTATGCCCTGGAACGTGAGAGG
ATAGAGGTGCGTGATTTTTATGACACCGTCGCGAATGATATAGCCCGCAT
ACAATGCGGATTCCCCTAGCAAGAAACCATTATTTGGCGTGAGATCCTTT
TTGTTATAATTATTATACTCCATCTATACTGCGAGGATATGTGAATTAGT
GCGGGATCACCAGTTGAACATAATTTCTTGGGGGAATATTCAGGGATTAA
AAACAAAAAGAAGGCTCAAATTCTTAGCACCTGGTTGATTTCGAGTTAGG
GGGACGGTGCTATACAATTTGAACCAAGGTCAATCGTAAATTGGAACGCG
CGACGAGGCTAGTCGTTTTGGGGGTTTCACAACAAGAAATGACCTCTTTA
ATGCTCACCTATACGTACCGCACCACTTTCAACGCATCGGGTGGCCTTCG
ATAGTGAATAGCTAACGGAGAAATTCACTCATTTGAAGGTGTGAAGAACC
ATACAAATTGGACCCTGAGTATAGGTCTTGAGACCGATGGTACAACTGTA
GCGCCACCCTAGCGAACGAAAATGTGGCGGGGTTCGTGCTGCCACACAAC
CAGCTAGTTGTGGCCGCCGATTAGAGCTACGAGCACGAACGAATACGCCG
CAGCATCAATGCACAAATATTACAGTAGTGACGCAGGTCGGTAGTGGCCT
GATAGTACGGCACGTACAAGCTTTGCGTATGATGTTCGGGCGATTGGCGG
GGTCACCAGTCTAGTTTCTCTGAGTCAGGCGGAGAAAATGTTCATGCACG
GTACTTGTCCGGCGCGAAACGGGTTGAGCGGTAGAGACAGCGTCGTCCAG
ATGCAATGTAGTCAGTGCATTCAACGTACTGGGGACATGTTGACTGTCTC
ACCTTGACGTTATCATTCGGTGTCACGACAATCGTGGGTTCTGCGCTTTA
ACGCTGCACCTAAATTACATTATACTTGTGATGCGCGAGTGGTTGATTGC
TACAGAGGACGAGAAAGGTAATAGAAGAGGAGGCGACCGCAGCCAAGGCT
TTGAAGAAACGGAAAAACTACAAACCCATAGGCTGGAAAAGTCGAGTGCA
GGTATGTATGTATGTATCTATGTAGGATTCCCTCTGCAGTATCTGCAGTA
GTAGGTTCCACTGCATGACTCCAGCAAAGTAGAAGCCTTTGGGCTTCGTG
GTTCGCCGTGCTGCAATGTGTGGTGTTGATATGGTGAAAAAGTTACGCGC
TGTTGAAACGAGGGTGCATATCCAAGAGCATGTACGACGACAGCAGGGGG
TGCGGCGCTCATTTCAAACGCGAGGCAGCTGTCGAGACGGGACGGGGCGC
GGCGGGGCGGAATGTGTGTGCTTATAATAGAGCATATTGCAGTAGTCGTA
GACCATTAACTTCGCATCCCAAAAATGCTGAGACGGAGCACTTGGCCGGG
GCTTGTCGGTATCGACTGCGTTTCGCAGGGGGGGTAACGTCCAGCTGTTA
GTCATCTCCCTTGCGTTGTTATCCCAAATGGATTATTTATCACGGCTTCA
TTGGGCATCCTGGTTATCCACGTATTGCATGCACGTACGGTCGGCGTGTC
TATATCCGAAGCACCACAAAGCATTTTTATTTCACGTATGATGATGAGGT
TACTACACGACATGTACAGCATTTAATATTTATAGTGCGCGATACACATG
AAGTACAATCCGCGGGGAGGGGGGAATCCCAACGCTGCACAAACATCACT
CAATGAAACTAAAACGTGCAAATCGCGGCGCACGCGGATGAGTACAGAGG
GGTGCGGAGTGTGTGAGTATGTGGGTTCTGATGATAGGCATGCAATAATC
AGAGAACGTTGACGTGAGAGGACAACTTTCCCAACCAGTACTACACTGCA
GTGACATTTGAAGAGGGAGAGCGATGTACCGACGATTAACGGCGCGGTAC
AACTGCAATCGAAATACATTTAAGTTTTTCTAACCTACCTTAAAACGGTC
GAAACCTCCCACTTAACGACAGCACGAATTGGAGGAGTCTCTTGGCGCAG
ACCGACGAATCGTATCCCACATTATGGAAAACATGCAAGCCTCCGCCATC
GCTGCAATACCCGGCGGCAGCCGCGGTGGCGGTGACGGAACTCCTTGCTT
GACTGGAAGGAAGTTGCCACCGCGTTTATCATCATCATTGACGACGCCGT
CATCCACGGTGAAGACACCAACGGGCTATAGCTGCAGGACAAAAAGCGAA
CAAATGCTACCACTGGGATATCAAGACAAAACATTCTTCGGGGTTTCAGG
TGGGGATGATGATGACGAGGGCGATCATCGAGGCACAGAGCTGTTGATTT
CAGTGGGACAAGACGAACGAACGGGTGGAGTGCTTACTAGTGGCCTCGGC
ATCGAGGAGGGAGTAGAGAGAAAATATTCGAGAGGGAAGCGACGGCAGTC
ATCGAAAGAGGAGGAGCGCAACATCGGCGCCAGCAGCAGCAACAGCAAAA
GCCGTCGTGGCGGGGACCGCAACAGTAGTAGCAATAATAACGGAAGAAAT
AAGCACGACATAAGAGCACGGAGGAAGGCTAAAGAGCGGGCCCGACGGAA
ACAGAAAATAAGCAAAGGCTTCATCGACGATAACGACACAAAGAGCGCAG
TCGACAGAAACACGAATAACACCGACAACAGCGACCCCCCGCCCGGTCCC
ATCACACCTCTAGCACTATCAGCACCAATAATAACATCAGAGGACGGGAA
GCCCGGCGGATGTCGGTACCGTGTGGCTGACGATATTTGCGGTAGCGCCC
AAAATCATGACGTGCTTCTCTTGCCTGTACGGCCGTCACCATCGACGGGT
CTAGTAGTAGATGTGGAGGGGAGCAAGGACAACTAATGCGAAGGAGGCAA
CTGTTCCGTTCGTGGGCGTTGGTGATGAAGGGGAGGAGGGGCAGCAGCAC
TAGCACCAGACGGGCGGAATTAAGCTGGAGTAGGCGGGAGTGGAGGCGCG
CGCGTGTGTCGGGGGGGTGTCCTCGGAATACGGAGAAAAAGAGTTCGAGA
GCGATGATGCGTCACCATCGCTCAAAACATTGAATTAGTGATGACGTGTG
ATCGAAGTTGCCTCGATTCGTTGGTCGTGAGGTGGAGGGGGGAAAGCAGC
AAGCAGTAACAGGATCAGATGGACAGTGCAATGCCGCGGTGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4538:10953..15395- >mRNA_H-paniculata_contig4538.11399.1 ID=mRNA_H-paniculata_contig4538.11399.1|Name=mRNA_H-paniculata_contig4538.11399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig4538:10953..15395- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAAACCCATTCAGCTTTGCTCGGCGTGCTACGCCGTGTGCTATGC
CCTGGAACGTGAGAGGATAGAGATGGAGAAACCCATTCAGCTTTGCTCGG
CGTGCTACGCCGTGTGCTATGCCCTGGAACGTGAGAGGATAGAGAGGACG
AGAAAGGTAATAGAAGAGGAGGCGACCGCAGCCAAGGCTTTGAAGAAACG
GAAAAACTACAAACCCATAGGCTGGAAAAGTCGAGTGCAGAGGACGAGAA
AGGTAATAGAAGAGGAGGCGACCGCAGCCAAGGCTTTGAAGAAACGGAAA
AACTACAAACCCATAGGCTGGAAAAGTCGAGTGCAGCACGAATTGGAGGA
GTCTCTTGGCGCAGACCGACGAATCGTATCCCACATTATGGAAAACATGC
AAGCCTCCGCCATCGCTGCAATACCCGGCGGCAGCCGCGGTGGCGGTGAC
GGAACTCCTTGCTTGACTGGAAGGAAGTTGCCACCGCGTTTATCATCATC
ATTGACGACGCCGTCATCCACGGTGAAGACACCAACGGGCTATAGCTGCA
GGACAAAAAGCGAACAAATGCTACCACTGGGATATCAAGACAAAACATTC
TTCGGGGTTTCAGGTGGGGATGATGATGACGAGGGCGATCATCGAGGCAC
AGAGCTGTTGATTTCAGTGGGACAAGACGAACGAACGGGTGGAGTGCTTA
CTAGTGGCCTCGGCATCGAGGAGGGAGTAGAGAGAAAATATTCGAGAGGG
AAGCGACGGCAGTCATCGAAAGAGGAGGAGCGCAACATCGGCGCCAGCAG
CAGCAACAGCAAAAGCCGTCGTGGCGGGGACCGCAACAGTAGTAGCAATA
ATAACGGAAGAAATAAGCACGACATAAGAGCACGGAGGAAGGCTAAAGAG
CGGGCCCGACGGAAACAGAAAATAAGCAAAGGCTTCATCGACGATAACGA
CACAAAGAGCGCAGTCGACAGAAACACGAATAACACCGACAACAGCGACC
CCCCGCCCGGTCCCATCACACCTCTAGCACTATCAGCACCAATAATAACA
TCAGAGGACGGGAAGCCCGGCGGATGTCGGTACCGTGTGGCTGACGATAT
TTGCGGTAGCGCCCAAAATCATGACGTGCTTCTCTTGCCTGTACGGCCGT
CACCATCGACGGGTCTAGTAGTAGATGTGGAGGGGAGCAAGGACAACTAA
CACGAATTGGAGGAGTCTCTTGGCGCAGACCGACGAATCGTATCCCACAT
TATGGAAAACATGCAAGCCTCCGCCATCGCTGCAATACCCGGCGGCAGCC
GCGGTGGCGGTGACGGAACTCCTTGCTTGACTGGAAGGAAGTTGCCACCG
CGTTTATCATCATCATTGACGACGCCGTCATCCACGGTGAAGACACCAAC
GGGCTATAGCTGCAGGACAAAAAGCGAACAAATGCTACCACTGGGATATC
AAGACAAAACATTCTTCGGGGTTTCAGGTGGGGATGATGATGACGAGGGC
GATCATCGAGGCACAGAGCTGTTGATTTCAGTGGGACAAGACGAACGAAC
GGGTGGAGTGCTTACTAGTGGCCTCGGCATCGAGGAGGGAGTAGAGAGAA
AATATTCGAGAGGGAAGCGACGGCAGTCATCGAAAGAGGAGGAGCGCAAC
ATCGGCGCCAGCAGCAGCAACAGCAAAAGCCGTCGTGGCGGGGACCGCAA
CAGTAGTAGCAATAATAACGGAAGAAATAAGCACGACATAAGAGCACGGA
GGAAGGCTAAAGAGCGGGCCCGACGGAAACAGAAAATAAGCAAAGGCTTC
ATCGACGATAACGACACAAAGAGCGCAGTCGACAGAAACACGAATAACAC
CGACAACAGCGACCCCCCGCCCGGTCCCATCACACCTCTAGCACTATCAG
CACCAATAATAACATCAGAGGACGGGAAGCCCGGCGGATGTCGGTACCGT
GTGGCTGACGATATTTGCGGTAGCGCCCAAAATCATGACGTGCTTCTCTT
GCCTGTACGGCCGTCACCATCGACGGGTCTAGTAGTAGATGTGGAGGGGA
GCAAGGACAACTAA back to top
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