mRNA_H-paniculata_contig4493.11309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4493.11309.1
Unique NamemRNA_H-paniculata_contig4493.11309.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4493.11309.1 vs. uniprot
Match: UPI001BB2134C (uncharacterized protein LOC121427317 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2134C)

HSP 1 Score: 50.4 bits (119), Expect = 3.710e-5
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   70 IEAADNSGTRPLMFACRGSHSQVADILLEAGADPRST-TSEGSTPLHFAAFAGSLLVRESMSE 255
            +   ++SG  PLM AC+     +A+ILLEAGADP  T T  GST LH+A      L+++   E
Sbjct:  643 VNRCNHSGQTPLMIACKYRQKDIANILLEAGADPNLTCTVNGSTALHYACEENGNLIKQCREE 705
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BLAST of mRNA_H-paniculata_contig4493.11309.1 vs. uniprot
Match: Q0J744_ORYSJ (Os08g0233400 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0J744_ORYSJ)

HSP 1 Score: 48.5 bits (114), Expect = 7.710e-5
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   61 RNQIEAADNSGTRPLMFACRGSHSQVADILLEAGADPRSTTSEGSTPLHFAAFAGSL 231
            R  + AAD+ G  PL+FA  G ++ +   LL+ GADP     +G TPLH AA  G L
Sbjct:   87 RVDVNAADDEGRTPLVFAVIGENAAIVKYLLDHGADPDKADDDGLTPLHSAAGIGPL 143
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BLAST of mRNA_H-paniculata_contig4493.11309.1 vs. uniprot
Match: A0A2P4XBX3_9STRA (Ankyrin repeat-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBX3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 8.740e-5
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   85 NSGTRPLMFACRGSHSQVADILLEAGADPRSTTSEGSTPLHFAAFAG 225
            +S T  L+ AC   HS V ++LL+AGADP+   ++G+TPLHF +  G
Sbjct:  197 DSTTTALLLACMAGHSNVVELLLDAGADPQVEDADGNTPLHFTSRDG 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4493.11309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001BB2134C3.710e-542.86uncharacterized protein LOC121427317 n=1 Tax=Lytec... [more]
Q0J744_ORYSJ7.710e-543.86Os08g0233400 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A2P4XBX3_9STRA8.740e-546.81Ankyrin repeat-containing protein n=1 Tax=Phytopht... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4493contigH-paniculata_contig4493:1031..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930349.5880356-CDS-H-paniculata_contig4493:1030..12971622930349.5880356-CDS-H-paniculata_contig4493:1030..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4493 1031..1297 -
1691481252.5634975-CDS-H-paniculata_contig4493:1030..12971691481252.5634975-CDS-H-paniculata_contig4493:1030..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4493 1031..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4493.11309.1prot_H-paniculata_contig4493.11309.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4493 1031..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4493.11309.1

>prot_H-paniculata_contig4493.11309.1 ID=prot_H-paniculata_contig4493.11309.1|Name=mRNA_H-paniculata_contig4493.11309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
FFLFFGLFPPILHSVVYFLPRNQIEAADNSGTRPLMFACRGSHSQVADIL
LEAGADPRSTTSEGSTPLHFAAFAGSLLVRESMSENPAL
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mRNA from alignment at H-paniculata_contig4493:1031..1297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4493.11309.1 ID=mRNA_H-paniculata_contig4493.11309.1|Name=mRNA_H-paniculata_contig4493.11309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig4493:1031..1297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTTTATTCTTTGGACTCTTTCCGCCGATACTACACTCGGTCGTATA
TTTTTTACCACGCAACCAGATCGAAGCGGCGGACAACAGCGGAACGCGAC
CGTTGATGTTCGCATGTCGAGGGAGCCACTCGCAAGTGGCAGACATCCTC
CTAGAAGCCGGAGCAGACCCGCGATCGACCACGTCCGAAGGATCGACGCC
ACTTCACTTCGCTGCTTTCGCTGGATCTTTACTGGTAAGAGAATCGATGA
GCGAAAATCCCGCTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig4493:1031..1297-

>mRNA_H-paniculata_contig4493.11309.1 ID=mRNA_H-paniculata_contig4493.11309.1|Name=mRNA_H-paniculata_contig4493.11309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig4493:1031..1297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTTTATTCTTTGGACTCTTTCCGCCGATACTACACTCGGTCGTATA
TTTTTTACCACGCAACCAGATCGAAGCGGCGGACAACAGCGGAACGCGAC
CGTTGATGTTCGCATGTCGAGGGAGCCACTCGCAAGTGGCAGACATCCTC
CTAGAAGCCGGAGCAGACCCGCGATCGACCACGTCCGAAGGATCGACGCC
ACTTCACTTCGCTGCTTTCGCTGGATCTTTACTGGTAAGAGAATCGATGA
GCGAAAATCCCGCTTTATTTTTTTTATTCTTTGGACTCTTTCCGCCGATA
CTACACTCGGTCGTATATTTTTTACCACGCAACCAGATCGAAGCGGCGGA
CAACAGCGGAACGCGACCGTTGATGTTCGCATGTCGAGGGAGCCACTCGC
AAGTGGCAGACATCCTCCTAGAAGCCGGAGCAGACCCGCGATCGACCACG
TCCGAAGGATCGACGCCACTTCACTTCGCTGCTTTCGCTGGATCTTTACT
GGTAAGAGAATCGATGAGCGAAAATCCCGCTTTA
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