mRNA_H-paniculata_contig42358.10828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig42358.10828.1
Unique NamemRNA_H-paniculata_contig42358.10828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.810e-22
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLDAGVIVGVG GRTYGKGLVQN+AELPYNNALKYTVAKYYTPSGR
Sbjct:  620 QDLDAGVIVGVGNGRTYGKGLVQNVAELPYNNALKYTVAKYYTPSGR 666
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-17
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QD D+GVIVGVG+GRT+GKGLVQN+  LPY++ALKYTVAKYYTPSGR
Sbjct:  427 QDTDSGVIVGVGKGRTFGKGLVQNVRPLPYDSALKYTVAKYYTPSGR 473
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: K0R2J9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2J9_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD GV+VG  +GRT+GKGLVQN+ +LPY  ALKYTVAKYYTPSGR
Sbjct:  516 QDLDVGVVVG--KGRTFGKGLVQNVQDLPYQTALKYTVAKYYTPSGR 560
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: B5YMX9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMX9_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD GV+VG  +GRT+GKGLVQN+ +LPY  ALKYTVAKYYTPSGR
Sbjct:  667 QDLDVGVVVG--KGRTFGKGLVQNVQDLPYQTALKYTVAKYYTPSGR 711
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A7S2AM26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AM26_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.410e-15
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLDAGVI+G    +T+GKGLVQN++ LPYN ALKYTVAKYYTPSGR
Sbjct:  193 QDLDAGVIIGAD--KTFGKGLVQNVSPLPYNTALKYTVAKYYTPSGR 237
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A7S1YXK9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXK9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.540e-15
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD GVIVG    RT+GKGLVQN+ +LPYN ALKYTVAKYYTPSGR
Sbjct:  574 QDLDVGVIVG--NERTFGKGLVQNVEDLPYNTALKYTVAKYYTPSGR 618
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A7S2U989_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U989_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.360e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD G+IVG    RT+GKGLVQN+  LP+N ALK+TVAKYYTPSGR
Sbjct:   67 QDLDVGLIVG--SDRTFGKGLVQNVETLPFNTALKFTVAKYYTPSGR 111
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A7S2KGE2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGE2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD GVIVG    R+YGKGLVQN+ ELPY+ ALKYTVAKYYTPSGR
Sbjct:  159 QDLDLGVIVG--SDRSYGKGLVQNVQELPYSTALKYTVAKYYTPSGR 203
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC)

HSP 1 Score: 75.1 bits (183), Expect = 1.580e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD+GVIVG  E RTYGKGLVQN+  LP+  ALKYTVAKYYTPSGR
Sbjct:  224 QDLDSGVIVG--EDRTYGKGLVQNVEPLPFKTALKYTVAKYYTPSGR 268
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BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Match: A0A7S2KGF4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGF4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.590e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 QDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR 150
            QDLD GVIVG    R+YGKGLVQN+ ELPY+ ALKYTVAKYYTPSGR
Sbjct:  529 QDLDLGVIVG--SDRSYGKGLVQNVQELPYSTALKYTVAKYYTPSGR 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig42358.10828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE7.810e-2295.74PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z050_9STRA1.670e-1780.85ClpP/crotonase-like domain-containing protein n=1 ... [more]
K0R2J9_THAOC4.580e-1576.60Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B5YMX9_THAPS4.580e-1576.60Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2AM26_9STRA8.410e-1576.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1YXK9_9STRA8.540e-1578.72Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S2U989_9STRA1.360e-1472.34Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2KGE2_9STRA1.510e-1478.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
I2CP28_NANGC1.580e-1478.72Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
A0A7S2KGF4_9STRA1.590e-1478.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig42358contigH-paniculata_contig42358:1023..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7FJW2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930287.3079047-CDS-H-paniculata_contig42358:1022..11751622930287.3079047-CDS-H-paniculata_contig42358:1022..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42358 1023..1175 -
1691481226.1512153-CDS-H-paniculata_contig42358:1022..11751691481226.1512153-CDS-H-paniculata_contig42358:1022..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig42358 1023..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig42358.10828.1prot_H-paniculata_contig42358.10828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig42358 1023..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig42358.10828.1

>prot_H-paniculata_contig42358.10828.1 ID=prot_H-paniculata_contig42358.10828.1|Name=mRNA_H-paniculata_contig42358.10828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MDWQDLDAGVIVGVGEGRTYGKGLVQNIAELPYNNALKYTVAKYYTPSGR
*
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mRNA from alignment at H-paniculata_contig42358:1023..1175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig42358.10828.1 ID=mRNA_H-paniculata_contig42358.10828.1|Name=mRNA_H-paniculata_contig42358.10828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig42358:1023..1175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTGGCAGGACCTAGACGCCGGCGTCATAGTCGGGGTGGGGGAAGG
GCGCACGTACGGAAAGGGTCTCGTGCAGAACATTGCGGAGCTGCCCTACA
ACAACGCCCTCAAGTATACTGTGGCCAAGTATTACACTCCAAGCGGGAGG
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig42358:1023..1175-

>mRNA_H-paniculata_contig42358.10828.1 ID=mRNA_H-paniculata_contig42358.10828.1|Name=mRNA_H-paniculata_contig42358.10828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig42358:1023..1175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTGGCAGGACCTAGACGCCGGCGTCATAGTCGGGGTGGGGGAAGG
GCGCACGTACGGAAAGGGTCTCGTGCAGAACATTGCGGAGCTGCCCTACA
ACAACGCCCTCAAGTATACTGTGGCCAAGTATTACACTCCAAGCGGGAGG
TGAATGGATTGGCAGGACCTAGACGCCGGCGTCATAGTCGGGGTGGGGGA
AGGGCGCACGTACGGAAAGGGTCTCGTGCAGAACATTGCGGAGCTGCCCT
ACAACAACGCCCTCAAGTATACTGTGGCCAAGTATTACACTCCAAGCGGG
AGGTGA
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