mRNA_H-paniculata_contig4215.10802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4215.10802.1
Unique NamemRNA_H-paniculata_contig4215.10802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 1.650e-95
Identity = 203/391 (51.92%), Postives = 249/391 (63.68%), Query Frame = 1
Query:   85 MADIDAADIDLLDFFSNDDDQSSTSAPPAITQHITQQSMNRQSPGPTAQPTFAPQRINGGDSDASLSSSAARPFNTANSXXXXXXXXXXXNISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKG-KLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGG-HCEFHVVAAFNRSQRQSQEKSRNKSQDGKTNSKGQTLRSLLMGNATEGRKV-----------------SSIASRNL----------PTARTPAPILAGILGAGKRRDDFGGSTR 1170
            M D+D  D+DLLD FS +   SS++  P  ++   QQ    QS GP+A P                             XXXXXXXXXXX  +        ADFTE +SGLRVRNRLLSAEDMRVRM+GRKVHRLD+L+  P R LES+D  DAWA +GVLVSKSPRRQAANGGS+S+WTLSDLSR+EN++SLF+FQEALGSHWT+C GTL+AVVGAKVLP K GD G+   +LA SVD+PWQ++++GM+MDY +CKG RKDGKPCTMPVNKTEGG  CEFHVVAAFNR+QR++   ++         +KG T +  L  +A  G  V                 + + SR+           P    PAP L+ ILGAG RR +  G+TR
Sbjct:    1 MRDMDDEDMDLLDLFSGETRPSSSNCHPRESKRTEQQ--KPQSRGPSASPXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXAPKXXXXPPADFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGDGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRKAPVGNK---------TKGNTQQPALSMSAKLGASVRQQXXXXXXXXRPFQSRAGLPSRSTMPGQRAQQGPPPRAAPAPTLSSILGAGARRREGVGATR 373          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 5.910e-82
Identity = 128/170 (75.29%), Postives = 150/170 (88.24%), Query Frame = 1
Query:  451 MRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKG-KLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGG-HCEFHVVAAFNRSQR 954
            MRVRM+GRKVHRLDAL+  P R LES+D  DAWA +GVLVSKSPRRQAANGGS+S+WTLSDLSR+EN++SLF+FQEALGSHWT+C GTL+AVVGAKVLP K G  G+   +LA SVD+PWQ++++GM+MDY +CKG RKDGKPCTMPVNKTEGG  CEFHVVAAFNR+QR
Sbjct:    1 MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGGGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQR 170          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: UPI000D1CC1AD (protein MCM10 homolog n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CC1AD)

HSP 1 Score: 129 bits (323), Expect = 1.160e-29
Identity = 73/194 (37.63%), Postives = 113/194 (58.25%), Query Frame = 1
Query:  355 NISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAA 936
            ++   G   +  D  E +SGLR+RNR LS E +  ++   +  +L+ALK A +     +    +WAT+ VL  K   R ++N  +Y IW LS L+  E+ +SLF+F +A   HW   +G+++A+  AKV          KG  ++SV    Q+  VG ++D+AIC G RKDG PC++PVN+ EG +C+FH +AA
Sbjct:   82 SVQSFGSNGSTPDL-EVHSGLRIRNRCLSREMLTTKLMELRFVKLEALKHAVI----GDGVRGSWATIAVLSDKGQPRVSSNSKNYVIWKLSCLN--ESTVSLFLFGDAYKEHWKEAVGSVIAIFDAKVRHDDK-----KGDFSVSVADVNQLTVVGTSLDFAICNGKRKDGAPCSVPVNRKEGAYCKFHALAA 263          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A1X7VR66_AMPQE (Protein MCM10 homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VR66_AMPQE)

HSP 1 Score: 130 bits (326), Expect = 3.480e-29
Identity = 68/181 (37.57%), Postives = 105/181 (58.01%), Query Frame = 1
Query:  397 TETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            TE ++GLR++N L+S+E M+ RM GRK+ R+   ++ P    E  D    W T GVLV+K P +    G  +S+W LSDLS + + +SLF+F +A   HW   +GT+VA++  K+   K  + G     +LS+D   ++  +G++ DY +C    K GK CT   NK  GG CE+H+   +
Sbjct:  126 TERFTGLRIKNPLVSSELMKERMSGRKMIRIP--QIYPNIKKEDFDIAGDWVTGGVLVNKLPPKNTTKGSKFSVWKLSDLSSQNDVVSLFLFDKAFDVHWKTPIGTVVAILNPKI-QNKQVNSGPGSNFSLSLDNNNKLMILGVSFDYTVCSANTKSGKKCTNFANKQYGGKCEYHLQGEY 303          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: UPI00077F8528 (protein MCM10 homolog isoform X1 n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F8528)

HSP 1 Score: 128 bits (321), Expect = 1.500e-28
Identity = 65/195 (33.33%), Postives = 117/195 (60.00%), Query Frame = 1
Query:  358 ISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDK-GKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            ++K    +A   +T++YSG+R+ + L+S + M+ RM+GR++ ++  +K      ++  D    W T+G+L+SK P + + +G ++SIW +SDL   E  +++F+F  A   HW M +GT++  +   ++P    D  DK G + LS+D   ++ ++G + D+  CKG RKDG  CT+PVN ++  +C FHV   +
Sbjct:  131 MNKNNSKSAEKCYTDSYSGIRIVDPLISFDMMQKRMEGRRLIKMSFIK----NFIKGGDIEGDWVTVGILISKLPPKTSKSGKNFSIWKMSDLHDCEKVVTMFLFGAAHAEHWKMTVGTVIGFLNPSLMP----DNKDKNGNMTLSIDHAGKLMQMGKSKDFGHCKGRRKDGTTCTVPVNVSQCEYCVFHVKREY 317          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.680e-28
Identity = 66/178 (37.08%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  400 ETYSGLRVRNRLLSAE-DMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKA-GDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHV 927
            E  SG+RV    L  E  +    +G K  +LD L     + LES D   AWAT+GVLV KS +R  ++G  +  W LS L+    + +L + ++AL SHW++C G+++ ++GA  LP +     GD   L  + D  WQ+ ++GM+ DYA+C GT+ +G  CT+ VNK+   +C +H 
Sbjct:    2 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP--LVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHA 177          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A4W3J4D2_CALMI (Protein MCM10 homolog n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J4D2_CALMI)

HSP 1 Score: 127 bits (319), Expect = 2.130e-28
Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 1
Query:  364 KAGPTAAVAD--FTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVA-PLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            + GP+  V      + +SGLR+RN L+S+ +M  +M+ RK+ RL  L+       LE+ D    W T GV+  K+  + ++NG ++SIW L+DL     +LSLF+F      HW    GT++ ++ A  + PK G      ++ LSVD P +I  +G AMD   C+  +K+G+PCT  VN  E G+CE+HV A +
Sbjct:   28 RPGPSGIVGQDIAVDRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGSE----EVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECGYCEYHVKAQY 214          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: V9KEH6_CALMI (Protein MCM10 homolog (Fragment) n=3 Tax=Callorhinchus milii TaxID=7868 RepID=V9KEH6_CALMI)

HSP 1 Score: 127 bits (319), Expect = 3.180e-28
Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 1
Query:  364 KAGPTAAVAD--FTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVA-PLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            + GP+  V      + +SGLR+RN L+S+ +M  +M+ RK+ RL  L+       LE+ D    W T GV+  K+  + ++NG ++SIW L+DL     +LSLF+F      HW    GT++ ++ A  + PK G      ++ LSVD P +I  +G AMD   C+  +K+G+PCT  VN  E G+CE+HV A +
Sbjct:  214 RPGPSGIVGQDIAVDRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGSE----EVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECGYCEYHVKAQY 400          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A485LLY3_9STRA (Aste57867_23134 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.260e-28
Identity = 71/194 (36.60%), Postives = 110/194 (56.70%), Query Frame = 1
Query:  361 SKAGPTAAVADFT-ETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            S  GP+   A  T E++S LR+++RL+SA++MR +M+GRK   L AL+  P+R LES+D    W T+ V+  K+  +  A    Y +WTLSDL      +S+F++  A   HW    G++VA++   V+P K     +KGK +L V   + + K+G A+D+  CK     G  C +P+N   G +C  H+ A F
Sbjct:  123 SGGGPSIPKAPSTIESFSSLRIKDRLVSADEMRDQMEGRKFIPLSALEKTPMRELESQDVD--WVTIAVVSKKTMGK--AEHSPYVVWTLSDLDNAM--ISVFLYGGAYDDHWKELEGSIVALINPMVMPAK-----EKGKFSLRVTLGFHVVKLGTALDFGFCKSLTHGGSRCKIPINMANGDYCVIHMAAKF 305          
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A8J5A2W2_9CHEL (Protein MCM10 homolog n=2 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A2W2_9CHEL)

HSP 1 Score: 124 bits (312), Expect = 2.340e-27
Identity = 58/180 (32.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  400 ETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
            ET+S +R+ NR++S+  ++ RMKGRK+ R+  ++      +   D    W T+GV+++KS  + + NG ++SIW LSDL+  +  +  F+F +    HW   +G+++ ++ A ++  K  D   K ++ ++VD   ++  +G++ D+ +CK  RKDG PC++ VNK    +C++HV +A+
Sbjct:  170 ETFSNIRILNRVVSSSTLKERMKGRKMIRISTIQSH----IHGGDVDGDWVTMGVIINKSETKTSKNGKNFSIWKLSDLNDCDTVIKFFLFGDVNKQHWKTTVGSVIGILNASIMDNK--DHVSK-EICITVDNSHKVMLIGVSKDFGLCKSKRKDGHPCSIVVNKNNCEYCQYHVKSAY 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE1.650e-9551.92Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI5.910e-8275.29Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
UPI000D1CC1AD1.160e-2937.63protein MCM10 homolog n=3 Tax=Selaginella moellend... [more]
A0A1X7VR66_AMPQE3.480e-2937.57Protein MCM10 homolog n=1 Tax=Amphimedon queenslan... [more]
UPI00077F85281.500e-2833.33protein MCM10 homolog isoform X1 n=3 Tax=Parasteat... [more]
A0A835YRW3_9STRA1.680e-2837.08Protein MCM10 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A4W3J4D2_CALMI2.130e-2836.92Protein MCM10 homolog n=1 Tax=Callorhinchus milii ... [more]
V9KEH6_CALMI3.180e-2836.92Protein MCM10 homolog (Fragment) n=3 Tax=Callorhin... [more]
A0A485LLY3_9STRA8.260e-2836.60Aste57867_23134 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J5A2W2_9CHEL2.340e-2732.22Protein MCM10 homolog n=2 Tax=Nymphon striatum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4215contigH-paniculata_contig4215:13151..14929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue5e-69
Seed eggNOG ortholog2880.D8LM23
Preferred nameMCM10
KEGG koko:K10736
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG3056@1,KOG3056@2759
Ec32 ortholog descriptionReplication factor Mcm10
Ec32 orthologEc-14_002590.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Exons3
Model size1180
Cds size1179
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4215.10802.1prot_H-paniculata_contig4215.10802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4215 13151..14928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930282.6720622-CDS-H-paniculata_contig4215:13150..139601622930282.6720622-CDS-H-paniculata_contig4215:13150..13960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 13151..13960 +
1691481224.2263005-CDS-H-paniculata_contig4215:13150..139601691481224.2263005-CDS-H-paniculata_contig4215:13150..13960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 13151..13960 +
1622930282.6891077-CDS-H-paniculata_contig4215:14297..145381622930282.6891077-CDS-H-paniculata_contig4215:14297..14538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 14298..14538 +
1691481224.2365003-CDS-H-paniculata_contig4215:14297..145381691481224.2365003-CDS-H-paniculata_contig4215:14297..14538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 14298..14538 +
1622930282.7044003-CDS-H-paniculata_contig4215:14800..149281622930282.7044003-CDS-H-paniculata_contig4215:14800..14928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 14801..14928 +
1691481224.2446628-CDS-H-paniculata_contig4215:14800..149281691481224.2446628-CDS-H-paniculata_contig4215:14800..14928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4215 14801..14928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4215.10802.1

>prot_H-paniculata_contig4215.10802.1 ID=prot_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
GAPETRGTTIASRKYIPVEASSAFRNFTMADIDAADIDLLDFFSNDDDQS
STSAPPAITQHITQQSMNRQSPGPTAQPTFAPQRINGGDSDASLSSSAAR
PFNTANSNSNSNNRSSNSNISKAGPTAAVADFTETYSGLRVRNRLLSAED
MRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAAN
GGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPP
KAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKT
EGGHCEFHVVAAFNRSQRQSQEKSRNKSQDGKTNSKGQTLRSLLMGNATE
GRKVSSIASRNLPTARTPAPILAGILGAGKRRDDFGGSTRFVT
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mRNA from alignment at H-paniculata_contig4215:13151..14929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4215.10802.1 ID=mRNA_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1779bp|location=Sequence derived from alignment at H-paniculata_contig4215:13151..14929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCACCAGAGACCAGGGGTACAACAATTGCATCAAGAAAATACATCCC TGTTGAGGCATCTTCAGCTTTTAGGAACTTCACGATGGCAGATATCGATG CAGCAGACATTGACTTGCTGGATTTCTTCTCCAACGATGATGATCAATCG TCCACGTCGGCACCTCCCGCCATAACCCAGCACATCACGCAGCAAAGCAT GAACCGTCAATCACCAGGACCAACAGCACAACCTACTTTCGCGCCCCAAC GTATTAATGGTGGAGATTCTGATGCGAGCCTCTCCTCAAGCGCTGCTCGT CCTTTCAACACTGCCAACAGCAATAGCAACAGCAACAACCGAAGCAGTAA TTCAAATATTTCAAAAGCAGGACCCACCGCCGCTGTAGCCGACTTCACAG AGACGTACTCCGGATTGCGAGTGCGCAACCGCCTGCTCTCCGCCGAGGAC ATGCGCGTGAGGATGAAAGGGCGCAAGGTACATCGCCTGGACGCGCTCAA GGTGGCACCGCTGCGGGTGCTGGAGAGTGAGGACACTTTCGACGCCTGGG CCACGTTAGGGGTGCTGGTGTCCAAGTCTCCACGACGCCAAGCGGCTAAC GGAGGCAGCTACTCGATCTGGACCCTCAGCGATCTCTCGCGAAAGGAGAA TGATTTATCTTTGTTCGTATTTCAGGAGGCTCTGGGCTCGCACTGGACAA TGTGCCTAGGAACTTTGGTGGCCGTTGTCGGCGCGAAGGTGCTGCCGCCG AAGGCTGGGGACGTCGGGGACAAGGGCAAGCTGGCGCTTTCAGTGGACAC GCCTTGGCAGGTGAGGTACTGTAGGGTGCAATTTTGGTGTATGTGCGCAG TAACGGGAGGACTGTGCTGTCGTTTGAGAGCCGGGACTGAATCAAATTGC AGTCATTTCTCTCGTATGTGAGCTACGAGCGTGAGTGTTGCGACGTTGGG TGTCGTATCGTGCATAATTTCGGAATAGCTATCTGTGACTGGGGGTTTTG TTTGCCGACAGACACGCCGGTCATGAGTAGTATGGTCCATTTGGTCCAAC TTAATTTTTTTGAATCATAACCAAGGGGGTCGCACCAAATTCAATACATG CCAAATTCAATTCCCACATACCCACAATGTCCCAACGCCCACACCAGATC CATAAGGTGGGTATGGCGATGGACTATGCCATTTGTAAAGGAACGCGGAA AGACGGAAAACCGTGCACAATGCCGGTCAACAAGACCGAGGGCGGCCACT GCGAGTTCCACGTCGTCGCTGCGTTCAATCGCTCTCAGCGCCAAAGTCAG GAGAAGTCTCGCAACAAATCCCAAGATGGCAAGACCAATAGCAAGGGTCA GACTCTTCGGTCCTTGCTCATGGGAAATGCCACAGAGGGTAAGTTGCGTG TTTTTGTGGTGGAAGTTTAAGGTTCAAGCGGTGATCGTCCTTTGGCGTGT CGTAGTGGCGATTGACGGTTGAGGTTAATATTTTCGAAGCCGGGACTTCG TGCTATATTTTGAACGCTATGTTTTGGTCCCTACGCCAACGATTGTGCTA TGAATGCACATTTTGGTCGTTAGGCACCTCGGAACTATCACAAACCATTG CCTTCGAAGACAGTAACCTGTTCATCCGTTTTCCCTCACCTACACGGCAG GTCGCAAGGTGTCTTCAATCGCATCTCGCAACTTGCCCACTGCGAGGACG CCTGCCCCGATCTTGGCCGGCATCCTAGGAGCGGGGAAACGCCGAGATGA TTTCGGGGGCTCAACGCGCTTCGTCACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4215:13151..14929+

>mRNA_H-paniculata_contig4215.10802.1 ID=mRNA_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig4215:13151..14929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCACCAGAGACCAGGGGTACAACAATTGCATCAAGAAAATACATCCC
TGTTGAGGCATCTTCAGCTTTTAGGAACTTCACGATGGCAGATATCGATG
CAGCAGACATTGACTTGCTGGATTTCTTCTCCAACGATGATGATCAATCG
TCCACGTCGGCACCTCCCGCCATAACCCAGCACATCACGCAGCAAAGCAT
GAACCGTCAATCACCAGGACCAACAGCACAACCTACTTTCGCGCCCCAAC
GTATTAATGGTGGAGATTCTGATGCGAGCCTCTCCTCAAGCGCTGCTCGT
CCTTTCAACACTGCCAACAGCAATAGCAACAGCAACAACCGAAGCAGTAA
TTCAAATATTTCAAAAGCAGGACCCACCGCCGCTGTAGCCGACTTCACAG
AGACGTACTCCGGATTGCGAGTGCGCAACCGCCTGCTCTCCGCCGAGGAC
ATGCGCGTGAGGATGAAAGGGCGCAAGGTACATCGCCTGGACGCGCTCAA
GGTGGCACCGCTGCGGGTGCTGGAGAGTGAGGACACTTTCGACGCCTGGG
CCACGTTAGGGGTGCTGGTGTCCAAGTCTCCACGACGCCAAGCGGCTAAC
GGAGGCAGCTACTCGATCTGGACCCTCAGCGATCTCTCGCGAAAGGAGAA
TGATTTATCTTTGTTCGTATTTCAGGAGGCTCTGGGCTCGCACTGGACAA
TGTGCCTAGGAACTTTGGTGGCCGTTGTCGGCGCGAAGGTGCTGCCGCCG
AAGGCTGGGGACGTCGGGGACAAGGGCAAGCTGGCGCTTTCAGTGGACAC
GCCTTGGCAGGGAGCACCAGAGACCAGGGGTACAACAATTGCATCAAGAA
AATACATCCCTGTTGAGGCATCTTCAGCTTTTAGGAACTTCACGATGGCA
GATATCGATGCAGCAGACATTGACTTGCTGGATTTCTTCTCCAACGATGA
TGATCAATCGTCCACGTCGGCACCTCCCGCCATAACCCAGCACATCACGC
AGCAAAGCATGAACCGTCAATCACCAGGACCAACAGCACAACCTACTTTC
GCGCCCCAACGTATTAATGGTGGAGATTCTGATGCGAGCCTCTCCTCAAG
CGCTGCTCGTCCTTTCAACACTGCCAACAGCAATAGCAACAGCAACAACC
GAAGCAGTAATTCAAATATTTCAAAAGCAGGACCCACCGCCGCTGTAGCC
GACTTCACAGAGACGTACTCCGGATTGCGAGTGCGCAACCGCCTGCTCTC
CGCCGAGGACATGCGCGTGAGGATGAAAGGGCGCAAGGTACATCGCCTGG
ACGCGCTCAAGGTGGCACCGCTGCGGGTGCTGGAGAGTGAGGACACTTTC
GACGCCTGGGCCACGTTAGGGGTGCTGGTGTCCAAGTCTCCACGACGCCA
AGCGGCTAACGGAGGCAGCTACTCGATCTGGACCCTCAGCGATCTCTCGC
GAAAGGAGAATGATTTATCTTTGTTCGTATTTCAGGAGGCTCTGGGCTCG
CACTGGACAATGTGCCTAGGAACTTTGGTGGCCGTTGTCGGCGCGAAGGT
GCTGCCGCCGAAGGCTGGGGACGTCGGGGACAAGGGCAAGCTGGCGCTTT
CAGTGGACACGCCTTGGCAGATCCATAAGGTGGGTATGGCGATGGACTAT
GCCATTTGTAAAGGAACGCGGAAAGACGGAAAACCGTGCACAATGCCGGT
CAACAAGACCGAGGGCGGCCACTGCGAGTTCCACGTCGTCGCTGCGTTCA
ATCGCTCTCAGCGCCAAAGTCAGGAGAAGTCTCGCAACAAATCCCAAGAT
GGCAAGACCAATAGCAAGGGTCAGACTCTTCGGTCCTTGCTCATGGGAAA
TGCCACAGAGGATCCATAAGGTGGGTATGGCGATGGACTATGCCATTTGT
AAAGGAACGCGGAAAGACGGAAAACCGTGCACAATGCCGGTCAACAAGAC
CGAGGGCGGCCACTGCGAGTTCCACGTCGTCGCTGCGTTCAATCGCTCTC
AGCGCCAAAGTCAGGAGAAGTCTCGCAACAAATCCCAAGATGGCAAGACC
AATAGCAAGGGTCAGACTCTTCGGTCCTTGCTCATGGGAAATGCCACAGA
GGGTCGCAAGGTGTCTTCAATCGCATCTCGCAACTTGCCCACTGCGAGGA
CGCCTGCCCCGATCTTGGCCGGCATCCTAGGAGCGGGGAAACGCCGAGAT
GATTTCGGGGGCTCAACGCGCTTCGTCACCGTCGCAAGGTGTCTTCAATC
GCATCTCGCAACTTGCCCACTGCGAGGACGCCTGCCCCGATCTTGGCCGG
CATCCTAGGAGCGGGGAAACGCCGAGATGATTTCGGGGGCTCAACGCGCT
TCGTCACC
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