mRNA_H-paniculata_contig4215.10802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE) HSP 1 Score: 313 bits (801), Expect = 1.650e-95 Identity = 203/391 (51.92%), Postives = 249/391 (63.68%), Query Frame = 1
Query: 85 MADIDAADIDLLDFFSNDDDQSSTSAPPAITQHITQQSMNRQSPGPTAQPTFAPQRINGGDSDASLSSSAARPFNTANSXXXXXXXXXXXNISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKG-KLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGG-HCEFHVVAAFNRSQRQSQEKSRNKSQDGKTNSKGQTLRSLLMGNATEGRKV-----------------SSIASRNL----------PTARTPAPILAGILGAGKRRDDFGGSTR 1170
M D+D D+DLLD FS + SS++ P ++ QQ QS GP+A P XXXXXXXXXXX + ADFTE +SGLRVRNRLLSAEDMRVRM+GRKVHRLD+L+ P R LES+D DAWA +GVLVSKSPRRQAANGGS+S+WTLSDLSR+EN++SLF+FQEALGSHWT+C GTL+AVVGAKVLP K GD G+ +LA SVD+PWQ++++GM+MDY +CKG RKDGKPCTMPVNKTEGG CEFHVVAAFNR+QR++ ++ +KG T + L +A G V + + SR+ P PAP L+ ILGAG RR + G+TR
Sbjct: 1 MRDMDDEDMDLLDLFSGETRPSSSNCHPRESKRTEQQ--KPQSRGPSASPXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXAPKXXXXPPADFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGDGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQRKAPVGNK---------TKGNTQQPALSMSAKLGASVRQQXXXXXXXXRPFQSRAGLPSRSTMPGQRAQQGPPPRAAPAPTLSSILGAGARRREGVGATR 373
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI) HSP 1 Score: 267 bits (683), Expect = 5.910e-82 Identity = 128/170 (75.29%), Postives = 150/170 (88.24%), Query Frame = 1
Query: 451 MRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKG-KLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGG-HCEFHVVAAFNRSQR 954
MRVRM+GRKVHRLDAL+ P R LES+D DAWA +GVLVSKSPRRQAANGGS+S+WTLSDLSR+EN++SLF+FQEALGSHWT+C GTL+AVVGAKVLP K G G+ +LA SVD+PWQ++++GM+MDY +CKG RKDGKPCTMPVNKTEGG CEFHVVAAFNR+QR
Sbjct: 1 MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGGGGNAPQRLAFSVDSPWQVNRIGMSMDYGLCKGKRKDGKPCTMPVNKTEGGGFCEFHVVAAFNRAQR 170
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: UPI000D1CC1AD (protein MCM10 homolog n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CC1AD) HSP 1 Score: 129 bits (323), Expect = 1.160e-29 Identity = 73/194 (37.63%), Postives = 113/194 (58.25%), Query Frame = 1
Query: 355 NISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAA 936
++ G + D E +SGLR+RNR LS E + ++ + +L+ALK A + + +WAT+ VL K R ++N +Y IW LS L+ E+ +SLF+F +A HW +G+++A+ AKV KG ++SV Q+ VG ++D+AIC G RKDG PC++PVN+ EG +C+FH +AA
Sbjct: 82 SVQSFGSNGSTPDL-EVHSGLRIRNRCLSREMLTTKLMELRFVKLEALKHAVI----GDGVRGSWATIAVLSDKGQPRVSSNSKNYVIWKLSCLN--ESTVSLFLFGDAYKEHWKEAVGSVIAIFDAKVRHDDK-----KGDFSVSVADVNQLTVVGTSLDFAICNGKRKDGAPCSVPVNRKEGAYCKFHALAA 263
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A1X7VR66_AMPQE (Protein MCM10 homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VR66_AMPQE) HSP 1 Score: 130 bits (326), Expect = 3.480e-29 Identity = 68/181 (37.57%), Postives = 105/181 (58.01%), Query Frame = 1
Query: 397 TETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
TE ++GLR++N L+S+E M+ RM GRK+ R+ ++ P E D W T GVLV+K P + G +S+W LSDLS + + +SLF+F +A HW +GT+VA++ K+ K + G +LS+D ++ +G++ DY +C K GK CT NK GG CE+H+ +
Sbjct: 126 TERFTGLRIKNPLVSSELMKERMSGRKMIRIP--QIYPNIKKEDFDIAGDWVTGGVLVNKLPPKNTTKGSKFSVWKLSDLSSQNDVVSLFLFDKAFDVHWKTPIGTVVAILNPKI-QNKQVNSGPGSNFSLSLDNNNKLMILGVSFDYTVCSANTKSGKKCTNFANKQYGGKCEYHLQGEY 303
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: UPI00077F8528 (protein MCM10 homolog isoform X1 n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F8528) HSP 1 Score: 128 bits (321), Expect = 1.500e-28 Identity = 65/195 (33.33%), Postives = 117/195 (60.00%), Query Frame = 1
Query: 358 ISKAGPTAAVADFTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDK-GKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
++K +A +T++YSG+R+ + L+S + M+ RM+GR++ ++ +K ++ D W T+G+L+SK P + + +G ++SIW +SDL E +++F+F A HW M +GT++ + ++P D DK G + LS+D ++ ++G + D+ CKG RKDG CT+PVN ++ +C FHV +
Sbjct: 131 MNKNNSKSAEKCYTDSYSGIRIVDPLISFDMMQKRMEGRRLIKMSFIK----NFIKGGDIEGDWVTVGILISKLPPKTSKSGKNFSIWKMSDLHDCEKVVTMFLFGAAHAEHWKMTVGTVIGFLNPSLMP----DNKDKNGNMTLSIDHAGKLMQMGKSKDFGHCKGRRKDGTTCTVPVNVSQCEYCVFHVKREY 317
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.680e-28 Identity = 66/178 (37.08%), Postives = 102/178 (57.30%), Query Frame = 1
Query: 400 ETYSGLRVRNRLLSAE-DMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKA-GDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHV 927
E SG+RV L E + +G K +LD L + LES D AWAT+GVLV KS +R ++G + W LS L+ + +L + ++AL SHW++C G+++ ++GA LP + GD L + D WQ+ ++GM+ DYA+C GT+ +G CT+ VNK+ +C +H
Sbjct: 2 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP--LVFAADASWQVVRIGMSSDYAVCGGTKANGARCTLAVNKSVSSYCSYHA 177
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A4W3J4D2_CALMI (Protein MCM10 homolog n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J4D2_CALMI) HSP 1 Score: 127 bits (319), Expect = 2.130e-28 Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 1
Query: 364 KAGPTAAVAD--FTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVA-PLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
+ GP+ V + +SGLR+RN L+S+ +M +M+ RK+ RL L+ LE+ D W T GV+ K+ + ++NG ++SIW L+DL +LSLF+F HW GT++ ++ A + PK G ++ LSVD P +I +G AMD C+ +K+G+PCT VN E G+CE+HV A +
Sbjct: 28 RPGPSGIVGQDIAVDRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGSE----EVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECGYCEYHVKAQY 214
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: V9KEH6_CALMI (Protein MCM10 homolog (Fragment) n=3 Tax=Callorhinchus milii TaxID=7868 RepID=V9KEH6_CALMI) HSP 1 Score: 127 bits (319), Expect = 3.180e-28 Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 1
Query: 364 KAGPTAAVAD--FTETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVA-PLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
+ GP+ V + +SGLR+RN L+S+ +M +M+ RK+ RL L+ LE+ D W T GV+ K+ + ++NG ++SIW L+DL +LSLF+F HW GT++ ++ A + PK G ++ LSVD P +I +G AMD C+ +K+G+PCT VN E G+CE+HV A +
Sbjct: 214 RPGPSGIVGQDIAVDRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGSE----EVCLSVDHPQKILVMGEAMDMGCCRARKKNGEPCTQIVNLRECGYCEYHVKAQY 400
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A485LLY3_9STRA (Aste57867_23134 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY3_9STRA) HSP 1 Score: 125 bits (313), Expect = 8.260e-28 Identity = 71/194 (36.60%), Postives = 110/194 (56.70%), Query Frame = 1
Query: 361 SKAGPTAAVADFT-ETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
S GP+ A T E++S LR+++RL+SA++MR +M+GRK L AL+ P+R LES+D W T+ V+ K+ + A Y +WTLSDL +S+F++ A HW G++VA++ V+P K +KGK +L V + + K+G A+D+ CK G C +P+N G +C H+ A F
Sbjct: 123 SGGGPSIPKAPSTIESFSSLRIKDRLVSADEMRDQMEGRKFIPLSALEKTPMRELESQDVD--WVTIAVVSKKTMGK--AEHSPYVVWTLSDLDNAM--ISVFLYGGAYDDHWKELEGSIVALINPMVMPAK-----EKGKFSLRVTLGFHVVKLGTALDFGFCKSLTHGGSRCKIPINMANGDYCVIHMAAKF 305
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Match: A0A8J5A2W2_9CHEL (Protein MCM10 homolog n=2 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A2W2_9CHEL) HSP 1 Score: 124 bits (312), Expect = 2.340e-27 Identity = 58/180 (32.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query: 400 ETYSGLRVRNRLLSAEDMRVRMKGRKVHRLDALKVAPLRVLESEDTFDAWATLGVLVSKSPRRQAANGGSYSIWTLSDLSRKENDLSLFVFQEALGSHWTMCLGTLVAVVGAKVLPPKAGDVGDKGKLALSVDTPWQIHKVGMAMDYAICKGTRKDGKPCTMPVNKTEGGHCEFHVVAAF 939
ET+S +R+ NR++S+ ++ RMKGRK+ R+ ++ + D W T+GV+++KS + + NG ++SIW LSDL+ + + F+F + HW +G+++ ++ A ++ K D K ++ ++VD ++ +G++ D+ +CK RKDG PC++ VNK +C++HV +A+
Sbjct: 170 ETFSNIRILNRVVSSSTLKERMKGRKMIRISTIQSH----IHGGDVDGDWVTMGVIINKSETKTSKNGKNFSIWKLSDLNDCDTVIKFFLFGDVNKQHWKTTVGSVIGILNASIMDNK--DHVSK-EICITVDNSHKVMLIGVSKDFGLCKSKRKDGHPCSIVVNKNNCEYCQYHVKSAY 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4215.10802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4215.10802.1 >prot_H-paniculata_contig4215.10802.1 ID=prot_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp GAPETRGTTIASRKYIPVEASSAFRNFTMADIDAADIDLLDFFSNDDDQSback to top mRNA from alignment at H-paniculata_contig4215:13151..14929+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4215.10802.1 ID=mRNA_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1779bp|location=Sequence derived from alignment at H-paniculata_contig4215:13151..14929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4215:13151..14929+ >mRNA_H-paniculata_contig4215.10802.1 ID=mRNA_H-paniculata_contig4215.10802.1|Name=mRNA_H-paniculata_contig4215.10802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig4215:13151..14929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |