mRNA_H-paniculata_contig4184.10744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4184.10744.1 vs. uniprot
Match: A0A6H5K5X6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X6_9PHAE) HSP 1 Score: 246 bits (628), Expect = 2.530e-65 Identity = 129/267 (48.31%), Postives = 174/267 (65.17%), Query Frame = 3
Query: 249 AASKVKKVNAKSGKPATEGTEMTKLEKGASTMYWAYKAFQAAQLCCGDVTVIAELASELLDEGM-AETMSNPALVGDAVEAVFSLHGGVKKFRKSTTNFSDFSTELSNQFKLQASAAPCNSDNEDETXXXXXXXAMEQAGASMEQAEHVYRHFTEA--NASGDETVSLEEFVHFYEKEGVPRSSAEMMFFQADIDGKGKISFEEWTKMMVSRVGRDESNFNCAGHHGMTPYVVRVNGLGCDWCSKLIPAGSTAAGCRRCDCDACGEC 1040
A +K+ VN K KP + ++++K G S YW YKAFQA +LC GDVT + E+A+ELLD+G+ A ++NP ++ +AV+AV S +GG++ FRK+ NF+ FS LS Q N+D + +T G +M+ AEH+Y FT+A ++ G +S+EE+V+F +EG+PRS AE FFQADIDG G+ISFEEWT MM+ RVGRDE +FNC GHHG+ YV NG+ CD+C I AG A GCRRCDCDAC C
Sbjct: 15 ATNKLTNVN-KLAKPTKDLSQLSKFRNGGSAAYWGYKAFQALRLCSGDVTTLVEIAAELLDQGLCAGLVANPGMIFEAVQAVVSAYGGIQSFRKNVKNFAQFSEALSKQL---------NADGKTQTN-----------GRAMDSAEHLYTMFTQACCDSDGSGGISVEEYVYFCGREGIPRSVAETTFFQADIDGNGQISFEEWTAMMIGRVGRDEDSFNCGGHHGLVQYVAVFNGMACDFCGAPIQAGFFAKGCRRCDCDACATC 260
BLAST of mRNA_H-paniculata_contig4184.10744.1 vs. uniprot
Match: D7G0S5_ECTSI (Calcium dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S5_ECTSI) HSP 1 Score: 212 bits (540), Expect = 7.790e-54 Identity = 110/252 (43.65%), Postives = 151/252 (59.92%), Query Frame = 3
Query: 288 KPATEGTEMTKLEKGASTMYWAYKAFQAAQLCCGDVTVIAELASELLDEGM-AETMSNPALVGDAVEAVFSLHGGVKKFRKSTTNFSDFSTELSNQFKLQASAAPCNSDNEDETXXXXXXXAMEQAGASMEQAEHVYRHFTEANASGDETVSLEEFVHFYEKEGVPRSSAEMMFFQADIDGKGKISFEEWTKMMVSRVGRDESNFNCAGHHGMTPYVVRVNGLGCDWCSKLIPAGSTAAGCRRCDCDACGEC 1040
+P + ++++K G S YW YKAFQA +LC GDVT +AE+A+ELLD+G+ A ++NP ++ +AVEAV S +GG++ FRK+ NF+ FS LS Q N D + +T G +M+ AEH+Y FTE ++ G +S+EE+V+F +EGVPRS AE WT MM+ RVGRD+ +FNC G+HG+ YV NG+ CD+C I AG A GCRRCDCDAC C
Sbjct: 22 RPTKDLSQLSKFRNGGSAAYWGYKAFQALRLCSGDVTALAEIAAELLDQGLCAGLVANPGMILEAVEAVVSAYGGIQSFRKNVKNFAQFSAALSKQL---------NGDGKTQTN-----------GRTMDSAEHLYTMFTECDSDGSGGISIEEYVYFCSREGVPRSVAETTXXXXXXXXXXXXXXXXWTAMMMGRVGRDKDSFNCGGNHGLVQYVAVYNGMACDFCGTPIQAGFFAKGCRRCDCDACATC 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4184.10744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4184.10744.1 >prot_H-paniculata_contig4184.10744.1 ID=prot_H-paniculata_contig4184.10744.1|Name=mRNA_H-paniculata_contig4184.10744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=629bp MQPPPPPAYEEIATTPRENNMRKKQNTKAATTTADGREKGKSTVTGRKEKback to top mRNA from alignment at H-paniculata_contig4184:4435..11459+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4184.10744.1 ID=mRNA_H-paniculata_contig4184.10744.1|Name=mRNA_H-paniculata_contig4184.10744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7025bp|location=Sequence derived from alignment at H-paniculata_contig4184:4435..11459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4184:4435..11459+ >mRNA_H-paniculata_contig4184.10744.1 ID=mRNA_H-paniculata_contig4184.10744.1|Name=mRNA_H-paniculata_contig4184.10744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3774bp|location=Sequence derived from alignment at H-paniculata_contig4184:4435..11459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |