mRNA_H-paniculata_contig41099.10583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8F0F7M8_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 6.850e-74 Identity = 114/123 (92.68%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
MKKK L IKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQA LKAR+EHKLNRVEVVVKGSGPGREPAIRA+HQKG+RIVSIKD+T IPYNGCRPPKRRRV
Sbjct: 1 MKKKTKLYIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQAALKAREEHKLNRVEVVVKGSGPGREPAIRAVHQKGIRIVSIKDDTFIPYNGCRPPKRRRV 123
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A1I9LVI2_9PHAE (30S ribosomal protein S11, chloroplastic n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVI2_9PHAE) HSP 1 Score: 191 bits (486), Expect = 6.240e-61 Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
MKKK I TG MH+HA+FNNTIVTI+DLNGNTLSWASSGTV FKGSRKGTPFAAQKAAE+A L A++ + L R+EVVVKGSGPGREPAIRA++QKG+R+VSIKD T IPYNGCRPPKRRRV
Sbjct: 1 MKKKIKRTIVTGTMHIHATFNNTIVTISDLNGNTLSWASSGTVNFKGSRKGTPFAAQKAAEKAALIAKESYGLKRLEVVVKGSGPGREPAIRAVYQKGIRVVSIKDVTFIPYNGCRPPKRRRV 123
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A141BSM1_9PHAE (30S ribosomal protein S11, chloroplastic n=17 Tax=Fucales TaxID=3009 RepID=A0A141BSM1_9PHAE) HSP 1 Score: 185 bits (469), Expect = 2.430e-58 Identity = 92/123 (74.80%), Postives = 108/123 (87.80%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
MKKK I TG MHVHA+FNNTIVT++DL+GNTLSWAS+GTV FKGSRK TPFA+QKAAE+A L A+DE+ L R+E+ +KGSGPGRE AIRA++QKG++IVSIKD TSIPYNGCRPPKRRRV
Sbjct: 1 MKKKIKRTIVTGAMHVHATFNNTIVTVSDLDGNTLSWASAGTVNFKGSRKSTPFASQKAAEKAALVAKDEYGLKRLEISIKGSGPGREAAIRAVYQKGIKIVSIKDNTSIPYNGCRPPKRRRV 123
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A2I4Q2J0_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J0_9PHAE) HSP 1 Score: 182 bits (461), Expect = 4.570e-57 Identity = 88/124 (70.97%), Postives = 108/124 (87.10%), Query Frame = 1
Query: 1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
K KK NL TG MHVHA+FNNTIVTI+D NG+T+SWAS+GTV FKGSRKGTPFA+QKAAEQA LKA D++ + +V V++KGSGPGREP IRA+HQKG+R++SI+D T+IP+NGCRPPKRRR+
Sbjct: 4 KKKKPKNLKGFTGTMHVHATFNNTIVTISDANGDTISWASAGTVNFKGSRKGTPFASQKAAEQAILKAYDDYNVKKVNVILKGSGPGREPCIRAVHQKGIRVLSIEDITAIPHNGCRPPKRRRI 127
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8E5XRL6_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL6_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.220e-54 Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
MKKK I TG +H+ A++NNTIVTI+DLNG T+SW+SSG +F GSRKGTPFAAQKAAE+AT KA+D + L RV+VV+KG GPGREPA+RA+HQ G+RI SIKD T IPYNGCRPPKRRRV
Sbjct: 1 MKKKIKRTILTGKIHIQATYNNTIVTISDLNGKTISWSSSGNADFTGSRKGTPFAAQKAAEEATRKAKDLYGLKRVDVVIKGPGPGREPAVRAVHQNGIRINSIKDITGIPYNGCRPPKRRRV 123
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: B7T1W4_VAULI (30S ribosomal protein S11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W4_VAULI) HSP 1 Score: 154 bits (390), Expect = 2.870e-46 Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 1
Query: 1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
K KKK +I +GI+H+H++FNNTI+T+TDL GN+++WAS+GT FKG+RKGT FAAQ AA++ATL+A D L +V+V+VKG GPGRE AIRA+ GV+IVSIKD T IPYNGCRPP RRRV
Sbjct: 4 KTKKKIKRNIPSGIVHIHSTFNNTIITVTDLKGNSVAWASAGTAGFKGTRKGTSFAAQLAAKKATLQAIDSG-LKKVKVLVKGRGPGRETAIRALQTTGVKIVSIKDITPIPYNGCRPPNRRRV 126
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8E5F964_9PHAE (Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F964_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.210e-45 Identity = 71/123 (57.72%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
+++KN ++ GIM++HASFNNTI+TITDL GNTLSWAS+GTV+FK ++KGT FA+QKA E+A L A+D + + ++++V+KGSGPGRE +IR+++ KG +I+SIKD T P+NGCRPP R +
Sbjct: 2 IRRKNRRIVQIGIMYIHASFNNTIITITDLKGNTLSWASAGTVDFKNAKKGTSFASQKAGEKAALIAKDLYGVKQLKIVIKGSGPGRESSIRSVYHKGFQILSIKDRTYSPFNGCRPPNHRSI 124
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A7U3NQU4_9STRA (30S ribosomal protein S11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3NQU4_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.350e-45 Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 7 KKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
KKK ++ TG+ H+ ++FNN I+TITDL+GNTLSW S+G+ FKGSRK TP+AAQ AAE+AT++ARD + L +VEVV+KG G GRE AIR+++ G+ I+SI D T++PYNGCRPPKRRRV
Sbjct: 6 KKKGKHNVITGVAHIKSTFNNNIITITDLDGNTLSWGSAGSAGFKGSRKSTPYAAQLAAEKATVQARD-YGLKKVEVVIKGQGSGRETAIRSLYSNGLEIISITDITAVPYNGCRPPKRRRV 126
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A3D1I9G8_9BACT (30S ribosomal protein S11 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A3D1I9G8_9BACT) HSP 1 Score: 149 bits (376), Expect = 4.390e-44 Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1
Query: 1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
K K K ++ G+ HVHASFNNTIVTITD GN +SWAS+G V FKGSRKGTPFAAQ AAEQA +A+D H + +VEV + G G GRE AIRA+ G+ ++SI D+T +P+NGCRPPKRRRV
Sbjct: 8 KAKAKEKKNVPVGVAHVHASFNNTIVTITDPQGNVISWASAGRVNFKGSRKGTPFAAQVAAEQAARRAQD-HGMRKVEVQLNGPGSGRETAIRALAAAGLEVLSICDKTKVPHNGCRPPKRRRV 130
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A662D066_9BACT (30S ribosomal protein S11 n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A662D066_9BACT) HSP 1 Score: 149 bits (376), Expect = 4.530e-44 Identity = 70/123 (56.91%), Postives = 98/123 (79.67%), Query Frame = 1
Query: 4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
+KKK + ++ G++++H++FNNTI+TIT+LNG+ L W+S+G V FKG++KGTPFAAQK AE A KA+ E +L RV VVVKG G GRE AIR + G++++SIK+ T IP+NGCRPPK+R+V
Sbjct: 9 VKKKKKIKVEEGVVYIHSTFNNTIITITNLNGDVLCWSSAGGVGFKGTKKGTPFAAQKTAEDAAKKAKGEFQLERVRVVVKGPGSGRETAIRTLQAAGLKVISIKEATPIPHNGCRPPKKRKV 131 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41099.10583.1 >prot_H-paniculata_contig41099.10583.1 ID=prot_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKback to top mRNA from alignment at H-paniculata_contig41099:322..696+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41099.10583.1 ID=mRNA_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig41099:322..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41099:322..696+ >mRNA_H-paniculata_contig41099.10583.1 ID=mRNA_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig41099:322..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |