mRNA_H-paniculata_contig41099.10583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41099.10583.1
Unique NamemRNA_H-paniculata_contig41099.10583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8F0F7M8_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 6.850e-74
Identity = 114/123 (92.68%), Postives = 118/123 (95.93%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            MKKK  L IKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQA LKAR+EHKLNRVEVVVKGSGPGREPAIRA+HQKG+RIVSIKD+T IPYNGCRPPKRRRV
Sbjct:    1 MKKKTKLYIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQAALKAREEHKLNRVEVVVKGSGPGREPAIRAVHQKGIRIVSIKDDTFIPYNGCRPPKRRRV 123          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A1I9LVI2_9PHAE (30S ribosomal protein S11, chloroplastic n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVI2_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 6.240e-61
Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            MKKK    I TG MH+HA+FNNTIVTI+DLNGNTLSWASSGTV FKGSRKGTPFAAQKAAE+A L A++ + L R+EVVVKGSGPGREPAIRA++QKG+R+VSIKD T IPYNGCRPPKRRRV
Sbjct:    1 MKKKIKRTIVTGTMHIHATFNNTIVTISDLNGNTLSWASSGTVNFKGSRKGTPFAAQKAAEKAALIAKESYGLKRLEVVVKGSGPGREPAIRAVYQKGIRVVSIKDVTFIPYNGCRPPKRRRV 123          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A141BSM1_9PHAE (30S ribosomal protein S11, chloroplastic n=17 Tax=Fucales TaxID=3009 RepID=A0A141BSM1_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 2.430e-58
Identity = 92/123 (74.80%), Postives = 108/123 (87.80%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            MKKK    I TG MHVHA+FNNTIVT++DL+GNTLSWAS+GTV FKGSRK TPFA+QKAAE+A L A+DE+ L R+E+ +KGSGPGRE AIRA++QKG++IVSIKD TSIPYNGCRPPKRRRV
Sbjct:    1 MKKKIKRTIVTGAMHVHATFNNTIVTVSDLDGNTLSWASAGTVNFKGSRKSTPFASQKAAEKAALVAKDEYGLKRLEISIKGSGPGREAAIRAVYQKGIKIVSIKDNTSIPYNGCRPPKRRRV 123          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A2I4Q2J0_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 4.570e-57
Identity = 88/124 (70.97%), Postives = 108/124 (87.10%), Query Frame = 1
Query:    1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            K KK  NL   TG MHVHA+FNNTIVTI+D NG+T+SWAS+GTV FKGSRKGTPFA+QKAAEQA LKA D++ + +V V++KGSGPGREP IRA+HQKG+R++SI+D T+IP+NGCRPPKRRR+
Sbjct:    4 KKKKPKNLKGFTGTMHVHATFNNTIVTISDANGDTISWASAGTVNFKGSRKGTPFASQKAAEQAILKAYDDYNVKKVNVILKGSGPGREPCIRAVHQKGIRVLSIEDITAIPHNGCRPPKRRRI 127          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8E5XRL6_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL6_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.220e-54
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            MKKK    I TG +H+ A++NNTIVTI+DLNG T+SW+SSG  +F GSRKGTPFAAQKAAE+AT KA+D + L RV+VV+KG GPGREPA+RA+HQ G+RI SIKD T IPYNGCRPPKRRRV
Sbjct:    1 MKKKIKRTILTGKIHIQATYNNTIVTISDLNGKTISWSSSGNADFTGSRKGTPFAAQKAAEEATRKAKDLYGLKRVDVVIKGPGPGREPAVRAVHQNGIRINSIKDITGIPYNGCRPPKRRRV 123          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: B7T1W4_VAULI (30S ribosomal protein S11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W4_VAULI)

HSP 1 Score: 154 bits (390), Expect = 2.870e-46
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            K KKK   +I +GI+H+H++FNNTI+T+TDL GN+++WAS+GT  FKG+RKGT FAAQ AA++ATL+A D   L +V+V+VKG GPGRE AIRA+   GV+IVSIKD T IPYNGCRPP RRRV
Sbjct:    4 KTKKKIKRNIPSGIVHIHSTFNNTIITVTDLKGNSVAWASAGTAGFKGTRKGTSFAAQLAAKKATLQAIDSG-LKKVKVLVKGRGPGRETAIRALQTTGVKIVSIKDITPIPYNGCRPPNRRRV 126          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A8E5F964_9PHAE (Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F964_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.210e-45
Identity = 71/123 (57.72%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            +++KN   ++ GIM++HASFNNTI+TITDL GNTLSWAS+GTV+FK ++KGT FA+QKA E+A L A+D + + ++++V+KGSGPGRE +IR+++ KG +I+SIKD T  P+NGCRPP  R +
Sbjct:    2 IRRKNRRIVQIGIMYIHASFNNTIITITDLKGNTLSWASAGTVDFKNAKKGTSFASQKAGEKAALIAKDLYGVKQLKIVIKGSGPGRESSIRSVYHKGFQILSIKDRTYSPFNGCRPPNHRSI 124          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A7U3NQU4_9STRA (30S ribosomal protein S11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3NQU4_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.350e-45
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    7 KKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            KKK   ++ TG+ H+ ++FNN I+TITDL+GNTLSW S+G+  FKGSRK TP+AAQ AAE+AT++ARD + L +VEVV+KG G GRE AIR+++  G+ I+SI D T++PYNGCRPPKRRRV
Sbjct:    6 KKKGKHNVITGVAHIKSTFNNNIITITDLDGNTLSWGSAGSAGFKGSRKSTPYAAQLAAEKATVQARD-YGLKKVEVVIKGQGSGRETAIRSLYSNGLEIISITDITAVPYNGCRPPKRRRV 126          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A3D1I9G8_9BACT (30S ribosomal protein S11 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A3D1I9G8_9BACT)

HSP 1 Score: 149 bits (376), Expect = 4.390e-44
Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 KMKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            K K K   ++  G+ HVHASFNNTIVTITD  GN +SWAS+G V FKGSRKGTPFAAQ AAEQA  +A+D H + +VEV + G G GRE AIRA+   G+ ++SI D+T +P+NGCRPPKRRRV
Sbjct:    8 KAKAKEKKNVPVGVAHVHASFNNTIVTITDPQGNVISWASAGRVNFKGSRKGTPFAAQVAAEQAARRAQD-HGMRKVEVQLNGPGSGRETAIRALAAAGLEVLSICDKTKVPHNGCRPPKRRRV 130          
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Match: A0A662D066_9BACT (30S ribosomal protein S11 n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A662D066_9BACT)

HSP 1 Score: 149 bits (376), Expect = 4.530e-44
Identity = 70/123 (56.91%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    4 MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVRIVSIKDETSIPYNGCRPPKRRRV 372
            +KKK  + ++ G++++H++FNNTI+TIT+LNG+ L W+S+G V FKG++KGTPFAAQK AE A  KA+ E +L RV VVVKG G GRE AIR +   G++++SIK+ T IP+NGCRPPK+R+V
Sbjct:    9 VKKKKKIKVEEGVVYIHSTFNNTIITITNLNGDVLCWSSAGGVGFKGTKKGTPFAAQKTAEDAAKKAKGEFQLERVRVVVKGPGSGRETAIRTLQAAGLKVISIKEATPIPHNGCRPPKKRKV 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41099.10583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7M8_9PHAE6.850e-7492.68Ribosomal protein S11 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LVI2_9PHAE6.240e-6178.8630S ribosomal protein S11, chloroplastic n=36 Tax=... [more]
A0A141BSM1_9PHAE2.430e-5874.8030S ribosomal protein S11, chloroplastic n=17 Tax=... [more]
A0A2I4Q2J0_9PHAE4.570e-5770.9730S ribosomal protein S11, chloroplastic n=1 Tax=D... [more]
A0A8E5XRL6_9PHAE2.220e-5470.7330S ribosomal protein S11, chloroplastic n=1 Tax=I... [more]
B7T1W4_VAULI2.870e-4664.5230S ribosomal protein S11, chloroplastic n=1 Tax=V... [more]
A0A8E5F964_9PHAE2.210e-4557.72Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A7U3NQU4_9STRA2.350e-4561.4830S ribosomal protein S11, chloroplastic n=1 Tax=S... [more]
A0A3D1I9G8_9BACT4.390e-4462.1030S ribosomal protein S11 n=1 Tax=Armatimonadetes ... [more]
A0A662D066_9BACT4.530e-4456.9130S ribosomal protein S11 n=1 Tax=Candidatus Aerop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41099contigH-paniculata_contig41099:322..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.9e-49
Seed eggNOG ortholog2880.D1J732
Preferred namerps11
KEGG rclassRC02795
KEGG koko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0100@1,KOG0408@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size375
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930254.5740783-UTR-H-paniculata_contig41099:321..3241622930254.5740783-UTR-H-paniculata_contig41099:321..324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41099 322..324 +
1691481212.2143822-UTR-H-paniculata_contig41099:321..3241691481212.2143822-UTR-H-paniculata_contig41099:321..324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41099 322..324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930254.59913-CDS-H-paniculata_contig41099:324..6961622930254.59913-CDS-H-paniculata_contig41099:324..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41099 325..696 +
1691481212.225675-CDS-H-paniculata_contig41099:324..6961691481212.225675-CDS-H-paniculata_contig41099:324..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41099 325..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41099.10583.1prot_H-paniculata_contig41099.10583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41099 325..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41099.10583.1

>prot_H-paniculata_contig41099.10583.1 ID=prot_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MKKKNNLDIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRK
GTPFAAQKAAEQATLKARDEHKLNRVEVVVKGSGPGREPAIRAIHQKGVR
IVSIKDETSIPYNGCRPPKRRRV*
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mRNA from alignment at H-paniculata_contig41099:322..696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41099.10583.1 ID=mRNA_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig41099:322..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATGAAAAAGAAAAATAACTTAGATATTAAAACAGGAATAATGCATGT CCATGCAAGTTTTAATAATACAATTGTAACAATAACTGATTTAAACGGAA ATACACTCTCTTGGGCCTCTTCTGGTACTGTTGAATTTAAAGGGTCTAGA AAAGGTACGCCATTTGCTGCACAAAAAGCAGCGGAACAGGCTACTTTAAA AGCTCGAGATGAACATAAGCTTAATCGAGTTGAAGTTGTTGTTAAAGGAT CGGGACCTGGACGCGAGCCTGCTATTAGAGCTATTCATCAAAAAGGAGTA AGAATTGTATCCATTAAAGATGAGACCTCTATACCTTATAATGGTTGTCG TCCACCAAAACGTAGGAGAGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig41099:322..696+

>mRNA_H-paniculata_contig41099.10583.1 ID=mRNA_H-paniculata_contig41099.10583.1|Name=mRNA_H-paniculata_contig41099.10583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig41099:322..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAAGAAAAATAACTTAGATATTAAAACAGGAATAATGCATGTCCA
TGCAAGTTTTAATAATACAATTGTAACAATAACTGATTTAAACGGAAATA
CACTCTCTTGGGCCTCTTCTGGTACTGTTGAATTTAAAGGGTCTAGAAAA
GGTACGCCATTTGCTGCACAAAAAGCAGCGGAACAGGCTACTTTAAAAGC
TCGAGATGAACATAAGCTTAATCGAGTTGAAGTTGTTGTTAAAGGATCGG
GACCTGGACGCGAGCCTGCTATTAGAGCTATTCATCAAAAAGGAGTAAGA
ATTGTATCCATTAAAGATGAGACCTCTATACCTTATAATGGTTGTCGTCC
ACCAAAACGTAGGAGAGTATAAATGAAAAAGAAAAATAACTTAGATATTA
AAACAGGAATAATGCATGTCCATGCAAGTTTTAATAATACAATTGTAACA
ATAACTGATTTAAACGGAAATACACTCTCTTGGGCCTCTTCTGGTACTGT
TGAATTTAAAGGGTCTAGAAAAGGTACGCCATTTGCTGCACAAAAAGCAG
CGGAACAGGCTACTTTAAAAGCTCGAGATGAACATAAGCTTAATCGAGTT
GAAGTTGTTGTTAAAGGATCGGGACCTGGACGCGAGCCTGCTATTAGAGC
TATTCATCAAAAAGGAGTAAGAATTGTATCCATTAAAGATGAGACCTCTA
TACCTTATAATGGTTGTCGTCCACCAAAACGTAGGAGAGTATAA
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