mRNA_H-paniculata_contig40893.10547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40893.10547.1
Unique NamemRNA_H-paniculata_contig40893.10547.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 300 bits (768), Expect = 2.190e-87
Identity = 173/431 (40.14%), Postives = 250/431 (58.00%), Query Frame = 1
Query:    4 STLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGH-REKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITF---GGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGF---------GCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVK 1257
            +++RTV  LA  ++L+++ MDV  A+LN  ++EE+++  PP F    HD   V  LRKSLYGLKQ+ R W   +      +G +R   D  ++   K E    +++ +YVDD++IAG+ R  +D FK  +S+RFEM +LGS   +LG+E+ RD  +  ++ISQ  YI ++L+R+G   CR V TP+E  +K+     A   P+P       Y   +GSLMYA  G+RPD  +AV   ++    P  + +    R+FRYL    DL +++      SNG    G+ DADWA DV DR+ST+G  F ++ GA+S  S+KQQ +  SS EAE VA   A KE ++LR LL  +           G K +  L  DN+SA+ L+K S  H RTKH+ +R H IR+ I    L  +YV T DQVAD+LTK L+R K
Sbjct: 1080 ASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFD---HDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFV--KVENGVILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKP-------YQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASISRSSPGSKVTPLLLVDNQSAMALAKNSTFHDRTKHIAVRHHFIRDEIERGTLEAEYVPTDDQVADVLTKALAREK 1498          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 281 bits (720), Expect = 6.020e-85
Identity = 158/422 (37.44%), Postives = 255/422 (60.43%), Query Frame = 1
Query:    7 TLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVV-VYVDDLVIAGHR-EKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVK-ISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKFQ 1263
            ++RTV  L+ +  L+L  MDV  A+LN  +E+E+++K P  F     +      L KSLYGLKQS R WN+ LD+ L  IG  +  +D C+Y     EE+ NI VV ++VDD+++AG   EK+ + K +I++RF+++++G L  +LG+++ ++  K  + I Q +Y   ++K+YG + C+ V TPV+   K +SA E ++        N  E+   VGSL+Y S+ TRPD  +AV+  A+   NP  E ++  KRIFRYL    + G+ +   +N   + GF DADWA D+ DRKST+G  F++N  A+S  S+KQ  V  S+  AE VA   A +E +++R+LL  +        T++EDN+SAI +SK    H R+KH+ ++++ +R+ + +  L + Y  TG  +AD+ TKG+ + +F+
Sbjct:  238 SIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVK---EEDGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAK--VWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSEL------FNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFK 646          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A438BTG2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BTG2_VITVI)

HSP 1 Score: 276 bits (706), Expect = 2.800e-84
Identity = 160/423 (37.83%), Postives = 251/423 (59.34%), Query Frame = 1
Query:    1 ISTLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGH-REKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFG-GKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKFQ 1263
            +S++RTV  +A   NLE+E +DV  A+L+  +EEE++++ P  F    +D   V  L+KSLYGLKQ+ R W    D F+   G  R T+D C+ F +K  +   I++++YVDD++I G    K+ + K  +S+ F M++LG   ++LGI + R+   G+I +SQ +Y+++VL+R+  DK + V  P+ G  K+S+ +      E        Y   +GSLMYA   TRPD  +AV   +R + NP +E ++  K I RYL     + + FG G+     L+GF D+D A DV+ RKST+G +     GA++  SR Q+ V  S+ EAE +A  EA KE ++L++ L  +G   +    L  D++SAIHLSK S  H R+KH+ +R+H IR+ + + LL L+ V T D  +D+LTK L++ K +
Sbjct:   98 MSSIRTVLGIAASMNLEVEQLDVKTAFLHGDLEEEIYMEQPEGFIDKGND-QLVCKLKKSLYGLKQAPRQWYRKFDSFMTEHGYSRTTSDHCV-FVKKYTDGNFIILLLYVDDMLIVGQDMSKISKLKSELSKSFAMKDLGPAKQILGIRIVRNRSHGLIWLSQENYVKKVLERFNMDKAKPVNCPLAGHFKLSSSQCPTSDEEKNEMQKIPYASAIGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWAAVKWILRYLQGTSKMSLCFGKGEPI---LDGFTDSDMAGDVDSRKSTSGYLITFAGGAVTWQSRLQKCVALSTTEAEFIAITEACKELLWLKKFLQELGLKQE-RYVLHCDSQSAIHLSKNSSFHSRSKHIDVRYHWIRDVLNDKLLQLEKVHTDDNTSDMLTKALTKDKHE 514          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 280 bits (717), Expect = 6.300e-84
Identity = 164/419 (39.14%), Postives = 237/419 (56.56%), Query Frame = 1
Query:    4 STLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVI-AGHREKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVK 1257
            +++RT+  L T+ +LE+  MDV  A+LN  ++EE+++ LPP F         +  L+K LYGLKQ+ R W   L      +G  R  ++  ++   KD+    ++V VYVDDL+I +   E V + K ++  +FEM +LG    +LG+E+ RD P   ++ISQ +Y  E+L+R+G   C+  PTP+E  V +     A+        +S  Y   VGSLMY   GT PD  ++V   ++    P +E     KR+ RY+    DLG+ F G  N   +E F+DADWA D  +R S TG V  +    IS SS+KQ     SS EAE +AA  A KE ++LR  +  +GF     T L+ DN+SAI L K S  H RTKH+ +R+H IRE + +  + L Y+ T DQVAD LTKGLS+VK
Sbjct:  296 TSIRTLLALTTELDLEIHQMDVKTAFLNRDLKEEIYMNLPPGFRKPG----VIWKLKKGLYGLKQASREWYKKLCTEFESMGFRRCNSNHAVFI--KDDNGIRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEV-------DSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVK 700          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 288 bits (738), Expect = 9.840e-84
Identity = 159/420 (37.86%), Postives = 255/420 (60.71%), Query Frame = 1
Query:   10 LRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHR-EKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVK-ISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKFQ 1263
            +RTV  L+ +  L+L  MDV  A+LN  +E+E+++K P  F     +   V  L KSLYGLKQS R WN+ LD+ L  IG  +  +D C+Y   K+E+    +V ++VDD+++AG   EK+ + K +I++RF+++++G L  +LG+++ ++  K  + I Q +Y   ++K+YG + C+ V TPV+   K +SA E ++        N  EY   VGSL+Y S+ TRPD  +AV+  A+   NP  E ++  KRIFRYL    + G+ +   +N   + GF DADWA D+ DRKST+G  F++N  A+S  S+KQ  V  S+ EAE VA   A +E +++R+LL  +        T++EDN+SAI +SK    H R+KH+ +++H +R+ + +  L + Y  TG  +AD+ TKG+ + +F+
Sbjct:  853 IRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYV--KEEDGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAK--VWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSEL------FNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFK 1260          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 288 bits (738), Expect = 1.910e-83
Identity = 166/419 (39.62%), Postives = 244/419 (58.23%), Query Frame = 1
Query:    4 STLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHR-EKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVK 1257
            ++LRT+  L  KH+LEL  MDV  AYLN  +EEE++++ PP F     D   V  L KS+YGLKQ+ R W   ++     +G  R   D  ++   +D + T +++++YVDD+  A +  E + + K  +S+ FE+ +LG +  +LG+E+ RD    I+T+SQ  YI +VL+R+GF   R + TPV    K+    +A+        ++ +Y   VGSLMYA  GTRPD  YAV   ++    P  E ++   R F+YL    D  + + GK     L G+VD+DWA+D  DR+S +G VF +   AIS SS+KQQ V  SS EAE +AA  A KE ++LR LL  +    +  T L  DN+ AI L+K    H  TKH+ +R H +R+ + +  +A +Y+ T DQVAD+LTKGLSR K
Sbjct:  986 NSLRTLLALTAKHDLELHQMDVKTAYLNGDLEEEIYMEPPPGFRG---DGNIVWRLIKSIYGLKQAGRVWYMRIEREFRDLGYSRSYADYGVFVFHRDSDGTLLIIIIYVDDIGAASNSMEAILQAKARLSKIFEITDLGEMRWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEI-------DARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREK 1394          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 273 bits (697), Expect = 2.150e-83
Identity = 162/420 (38.57%), Postives = 246/420 (58.57%), Query Frame = 1
Query:    7 TLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHREKVD-EFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGH-GLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKF 1260
            T+R +F +    N+ +  +DV  AYLN  ++EELF++ PP FS  +     +R LR+SLYGLKQS R WN    D L  +G      D CL FSR ++  T   V++YVDDL+IAG   ++  +    ++  FE+++LG + + LG+++ R+   G   + Q + +R +LK +G    + V TP+E     S  E + K P+     + EY   +GSL+Y +T TRPD  +AV Q  R ME+P Q D+   KR+ RYL+  P   + F   +NG   L GFVDADWA D  DRKST+G  FK+ +  ++ SSRKQ  V  SS EAE +AA EA ++ +++R++L  IG      T ++EDN+  I +++      RTKH+ +R+H++RE     ++AL Y  + +  AD+LTK L++ KF
Sbjct:   69 TVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGKVLR-LRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREED-GSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPD-----NAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRF--SANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTKPLTKDKF 478          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 288 bits (736), Expect = 2.550e-83
Identity = 166/419 (39.62%), Postives = 245/419 (58.47%), Query Frame = 1
Query:    7 TLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHRE-KVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVE-GKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVK 1257
            T+R +F +A +  L +  +D+  AYLN+ ++EE++++ P  F    H    ++ L+K++YGLKQS R WNN+LD+ L  +G  R   ++CLY   K +++ +  + VYVDDL+I    E ++   K  IS +FEM + GSLS  LG+E++RD  +G +++ Q +YIR +LK YG   CR V TP++ G +     +S  K       N T+Y  ++GSLMY +  +RPD ++AV + ++R  NP  E  +  K I RYLS   +L I +  +  G  + GF DADWA+D  DRKS +G  F +   A S SS KQ +V  SS EAE VA   A KE +YLR LL  IG+       +  DN  A ++SK    H RTKH+ +++H IRE +    + LK+V T   VADI TK L + K
Sbjct:  910 TIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNFISTEHPNKVLK-LKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYV--KQQQQGSSYIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKV------NVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVALTAAAKEAVYLRRLLAEIGWSAGEPMVINGDNMGAQYISKNPVHHKRTKHIDIKFHFIREKVASNEIELKFVSTDKNVADIFTKSLCKQK 1317          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM)

HSP 1 Score: 280 bits (717), Expect = 4.220e-83
Identity = 151/413 (36.56%), Postives = 242/413 (58.60%), Query Frame = 1
Query:   31 ATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHREKV-DEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIG-FGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKFQ 1263
            A K+ L+L  MDV  A+LN  ++E++++  P  +    H    V  L++SLYGLKQS R WN ++DDF++ +G  +  +D C+Y  R  ++   I V +YVDDLV+A   +++ +  KH +S+RFEM +LG L   LG+E++ DH  G +T+ Q  +++ +L ++G    + V TP +  +K++            +  +  Y   VG+LMY    TRPD   AV   ++   +PC   +   KR+ RYL   P  G+ F  + +  G+ G+ DADWA D+E R+ST+G  F MN G IS  S+KQ+ V  SS EAE +A  EA +E ++L+  L  +G      +  ++EDN+ +I L+K    H RTKH+ +R+H +RE + +  + L+YV T D +AD++TK ++ V+FQ
Sbjct:  392 AAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHP-DHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDM--IFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQ 800          
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 286 bits (733), Expect = 5.040e-83
Identity = 159/422 (37.68%), Postives = 249/422 (59.00%), Query Frame = 1
Query:    1 ISTLRTVFCLATKHNLELEGMDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRNWNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHRE-KVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLMYASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*SSRKQQLVTWSSKEAECVAAGEAGKETIYLRELLGSIGFGCKGSTTLFEDNKSAIHLSKGSGPHCRTKHMGMRWHEIREWIREVLLALKYVQTGDQVADILTKGLSRVKFQ 1263
            ++TLRT+  +A + N  L+ +DV  A+L   + E+++++  PE   ++ D+ F   L KSLYGLKQ+ + W+   D+++  +GL++  +D CLY    +     I +++YVDD++IAG    K+ E K  + + FEME+ G L+  LG+++  D   G + I+Q  Y+ +VLK++  D C  + TP+E K+ I          + K   +  Y  +VGSLMYA  G+RPD  YA++   R    P +  ++  KR+ RY+    + G+ F  +SN   L GFVDADWA    DRKSTTG +FK+ +  +S S+++Q  V  SS EAE +A   A  E I++R+LL  +     G   LFEDN+ AIHLS     H R+KH+  + H +RE ++E L+ LKY+ T +Q+AD+LTKGL   +F+
Sbjct:  861 LTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQ-PEGLNYNSDMIFK--LNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE--------DNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGLGNERFK 1271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40893.10547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VV58_TRAPU2.190e-8740.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HZ03_PARCT6.020e-8537.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438BTG2_VITVI2.800e-8437.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C9VSW1_SPHS46.300e-8439.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT9.840e-8437.86Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y9ZJA2_9AGAM1.910e-8339.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A5S6QJX2_TRIMR2.150e-8338.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
W8BWJ0_CERCA2.550e-8339.62Retrovirus-related Pol polyprotein from transposon... [more]
H3H8W9_PHYRM4.220e-8336.56Integrase catalytic domain-containing protein n=3 ... [more]
J9KJ72_ACYPI5.040e-8337.68Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40893contigH-paniculata_contig40893:184..1506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue2.1e-48
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1263
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40893.10547.1prot_H-paniculata_contig40893.10547.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40893 517..1446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930249.4375324-UTR-H-paniculata_contig40893:183..5161622930249.4375324-UTR-H-paniculata_contig40893:183..516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40893 184..516 -
1691481209.670641-UTR-H-paniculata_contig40893:183..5161691481209.670641-UTR-H-paniculata_contig40893:183..516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40893 184..516 -
1622930249.510168-UTR-H-paniculata_contig40893:1446..15061622930249.510168-UTR-H-paniculata_contig40893:1446..1506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40893 1447..1506 -
1691481209.7037985-UTR-H-paniculata_contig40893:1446..15061691481209.7037985-UTR-H-paniculata_contig40893:1446..1506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40893 1447..1506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930249.464339-CDS-H-paniculata_contig40893:516..8321622930249.464339-CDS-H-paniculata_contig40893:516..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40893 517..832 -
1691481209.681989-CDS-H-paniculata_contig40893:516..8321691481209.681989-CDS-H-paniculata_contig40893:516..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40893 517..832 -
1622930249.485674-CDS-H-paniculata_contig40893:892..14461622930249.485674-CDS-H-paniculata_contig40893:892..1446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40893 893..1446 -
1691481209.6916246-CDS-H-paniculata_contig40893:892..14461691481209.6916246-CDS-H-paniculata_contig40893:892..1446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40893 893..1446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40893.10547.1

>prot_H-paniculata_contig40893.10547.1 ID=prot_H-paniculata_contig40893.10547.1|Name=mRNA_H-paniculata_contig40893.10547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
MDVDEAYLNAPVEEELFVKLPPEFSPFSHDIPFVRHLRKSLYGLKQSDRN
WNNSLDDFLVGIGLDRFTTDSCLYFSRKDEEETNILVVVYVDDLVIAGHR
EKVDEFKHNISQRFEMEELGSLSRVLGIELRRDHPKGIITISQGSYIREV
LKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPKSGNSTEYGGMVGSLM
YASTGTRPDRVYAVHQAARRMENPCQEDFSTCKRIFRYLSTVPDLGITFG
GKSNGHGLEGFVDADWADDVEDRKSTTGNVFKMNSGAIS*
back to top

mRNA from alignment at H-paniculata_contig40893:184..1506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40893.10547.1 ID=mRNA_H-paniculata_contig40893.10547.1|Name=mRNA_H-paniculata_contig40893.10547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at H-paniculata_contig40893:184..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCGACGTTACGTACTGTTTTTTGCCTGGCCACCAAACATAATCTTGA ATTAGAAGGCATGGACGTAGATGAGGCGTATTTGAACGCCCCGGTAGAAG AAGAGCTATTTGTTAAGCTGCCCCCCGAGTTTTCCCCTTTCTCCCATGAC ATACCGTTTGTGCGCCACCTGCGTAAAAGCTTGTACGGCCTCAAGCAGAG CGACCGTAACTGGAATAACAGTCTTGACGATTTTCTTGTTGGGATAGGAC TCGACCGTTTCACTACCGACTCATGCTTGTACTTTTCTCGGAAGGATGAG GAGGAGACAAACATTCTTGTGGTCGTGTATGTTGACGACCTGGTCATTGC TGGCCATCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTT TTGAGATGGAAGAATTGGGCTCGCTCTCGCGCGTGTTAGGAATAGAATTA CGACGTGACCACCCTAAGGGTATCATAACCATCTCGCAGGGTAGCTACAT CCGCGAGGTACTGAAACGATACGGTTTTGACAAGTGTCGAGGGGTACCCA CCCCTGTAGAAGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAG CCCCCCGAACCGAAGTCACTTGGAGCTGTACTGTCGGACATAGGCACAGG AGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAATTCAACCGAATACGGAG GCATGGTAGGATCGCTCATGTACGCCTCGACAGGAACTAGACCCGATAGA GTATATGCGGTACACCAAGCAGCACGTCGTATGGAAAACCCATGTCAGGA AGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTAAGTACTGTGCCTG ACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGA TTCGTTGATGCCGATTGGGCGGACGACGTCGAGGACCGAAAGTCCACAAC AGGAAACGTATTTAAAATGAACAGTGGTGCGATAAGTTGATCCTCTAGGA AGCAACAGTTAGTCACGTGGTCCAGTAAAGAGGCAGAGTGCGTTGCTGCA GGAGAAGCGGGAAAGGAGACGATATATCTTAGGGAGTTACTAGGATCGAT TGGTTTCGGATGCAAGGGGAGCACGACATTGTTTGAGGACAATAAATCAG CTATTCATCTCAGTAAGGGATCTGGCCCACACTGCAGGACAAAACATATG GGAATGCGCTGGCACGAAATTCGAGAATGGATTCGGGAAGTACTACTGGC GTTGAAATACGTGCAGACCGGCGACCAAGTTGCTGACATTTTAACGAAAG GACTAAGCAGAGTAAAGTTTCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40893:184..1506-

>mRNA_H-paniculata_contig40893.10547.1 ID=mRNA_H-paniculata_contig40893.10547.1|Name=mRNA_H-paniculata_contig40893.10547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig40893:184..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGAGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTATT
TGTTAAGCTGCCCCCCGAGTTTTCCCCTTTCTCCCATGACATACCGTTTG
TGCGCCACCTGCGTAAAAGCTTGTACGGCCTCAAGCAGAGCGACCGTAAC
TGGAATAACAGTCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTT
CACTACCGACTCATGCTTGTACTTTTCTCGGAAGGATGAGGAGGAGACAA
ACATTCTTGTGGTCGTGTATGTTGACGACCTGGTCATTGCTGGCCATCGT
GAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTGAGATGGA
AGAATTGGGCTCGCTCTCGCGCGTGTTAGGAATAGAATTACGACGTGACC
ACCCTAAGGGTATCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTA
CTGAAACGATACGGTTTTGACAAGTGTCGAGGGGTACCCACCCCTGTAGA
AGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCCCCGAAC
CGAAATGGACGTAGATGAGGCGTATTTGAACGCCCCGGTAGAAGAAGAGC
TATTTGTTAAGCTGCCCCCCGAGTTTTCCCCTTTCTCCCATGACATACCG
TTTGTGCGCCACCTGCGTAAAAGCTTGTACGGCCTCAAGCAGAGCGACCG
TAACTGGAATAACAGTCTTGACGATTTTCTTGTTGGGATAGGACTCGACC
GTTTCACTACCGACTCATGCTTGTACTTTTCTCGGAAGGATGAGGAGGAG
ACAAACATTCTTGTGGTCGTGTATGTTGACGACCTGGTCATTGCTGGCCA
TCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTGAGA
TGGAAGAATTGGGCTCGCTCTCGCGCGTGTTAGGAATAGAATTACGACGT
GACCACCCTAAGGGTATCATAACCATCTCGCAGGGTAGCTACATCCGCGA
GGTACTGAAACGATACGGTTTTGACAAGTGTCGAGGGGTACCCACCCCTG
TAGAAGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCCCC
GAACCGAAAAGTGGCAATTCAACCGAATACGGAGGCATGGTAGGATCGCT
CATGTACGCCTCGACAGGAACTAGACCCGATAGAGTATATGCGGTACACC
AAGCAGCACGTCGTATGGAAAACCCATGTCAGGAAGACTTCAGTACATGC
AAGCGCATTTTTCGTTATCTAAGTACTGTGCCTGACCTCGGCATTACGTT
CGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATT
GGGCGGACGACGTCGAGGACCGAAAGTCCACAACAGGAAACGTATTTAAA
ATGAACAGTGGTGCGATAAGTTGAAAGTGGCAATTCAACCGAATACGGAG
GCATGGTAGGATCGCTCATGTACGCCTCGACAGGAACTAGACCCGATAGA
GTATATGCGGTACACCAAGCAGCACGTCGTATGGAAAACCCATGTCAGGA
AGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTAAGTACTGTGCCTG
ACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGA
TTCGTTGATGCCGATTGGGCGGACGACGTCGAGGACCGAAAGTCCACAAC
AGGAAACGTATTTAAAATGAACAGTGGTGCGATAAGTTGA
back to top