mRNA_H-paniculata_contig4083.10542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4083.10542.1
Unique NamemRNA_H-paniculata_contig4083.10542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4083.10542.1 vs. uniprot
Match: D8LBV6_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 7.250e-20
Identity = 63/142 (44.37%), Postives = 81/142 (57.04%), Query Frame = 3 
Query:   15 LQLLPVALIMLYSLFGGSYQEDAAFSLHQTTKYPTAKVTTQQPGVVEGINYYVTPKFRQLYARDRNQLRRVEKSVTEYFKRQLEYECDDLKHRKSSRVIQAKRRRKSMETEAYAQQVRDAEDMPLPACQELARKFSSFSEYN 440
            L LL   ++M  +LFGG  QE AAFSL +T+ Y   K TTQ+ GVV GI+Y+V PKFRQ YA +  +LRR                              AKR+R++M++EAY Q + + E  PLPAC+ELA KFSS S YN
Sbjct:  287 LPLLGAIVLMFLTLFGGEQQE-AAFSLERTSAYKVPKTTTQEKGVVGGIDYFVAPKFRQKYATNAERLRR------------------------------AKRKRRTMDSEAYDQLILEMETTPLPACEELAVKFSSHSTYN 397
[Close]
BLAST of mRNA_H-paniculata_contig4083.10542.1 vs. uniprot
Match: A0A6H5JQ06_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ06_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.970e-15
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 3 
Query:   15 LQLLPVALIMLYSLFGGSYQEDAAFSLHQTTKYPTAKVTTQQPGVVEGINYYVTPKFRQLYARDRNQLRRVEKSVTEYFKRQLEYECDDLKHRKSSRVIQAKRRRKS 335
            L LL   ++M  +LFGG  QE AAFSL +T+ Y   K TTQ+ GVV GI+Y+V PKFRQ YA +  +LRRVE +VTE +K  L   C+  + +  +RV QA   +K+
Sbjct:  318 LPLLGAIVLMFLTLFGGEQQE-AAFSLERTSAYKIPKTTTQEKGVVGGIDYFVAPKFRQKYATNAERLRRVEVAVTEQYKTNLILNCNYSRQKNQARVAQASEAKKT 423
[Close]
BLAST of mRNA_H-paniculata_contig4083.10542.1 vs. uniprot
Match: A0A7S2SSK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSK5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.040e-9
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:   15 LQLLPVALIMLYSLFGGSYQEDAAFSLHQTTKYPTAKVTTQQPGVVEGINYYVTPKFRQLYARDRNQLRRVEKSVTEYFKRQLEYECDDLKHRKSSRVIQAKRRRKSMETEAYAQQVRDAEDMPLPACQELARKFSS 425
            LQL P+ L ++ S+F  S   ++ FSL ++  Y   + T    G+  GI Y+V   F + Y R R QL  VE  V + F  +L YEC    H++   + +AK  R S + +A  ++   A+ M L AC++  R F S
Sbjct:  262 LQLAPIFLFLVTSMFFPSGSYESPFSLQRSGGYAIQRATQDSRGIRGGIEYFVKESFAKNYGRTRRQLASVEGQVQQAFHDELRYECTQQHHQQRLAMNRAKFSRDSAKRQALTER---AKQMSLSACEDYERWFGS 395
[Close]
BLAST of mRNA_H-paniculata_contig4083.10542.1 vs. uniprot
Match: A0A7S2X833_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X833_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 7.670e-6
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 3 
Query:   15 LQLLPVALIMLYSLFGG-SYQEDAAFSLHQTTKYPTAKVTTQQPGVVEGINYYVTPKFRQLYARDRNQLRRVEKSVTEYFKRQLEYECDDLKHRKSSRVIQAKR----RRKSMETEAYAQQVRDAEDMPLPAC 398
            LQL+P+A++ L SLF G +++E+  +SL +T  YP ++ T      +    Y+V  KF + YARD   LR VE+ V   + ++L+  C   +  K + V +A+      R  ++  +  +++R A  M  P+C
Sbjct:  186 LQLMPLAILFLLSLFSGPAHEENIPYSLTRTGDYPLSRRT------LHDTEYFVNYKFHKRYARDARALRSVEEMVDLDYLQKLQDSCHRERKAKQTAVRRAEEAAAAERDDLDARSRTERLRKAHSMSTPSC 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4083.10542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBV6_ECTSI7.250e-2044.37Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A6H5JQ06_9PHAE1.970e-1547.66HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A7S2SSK5_9STRA2.040e-933.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2X833_9EUKA7.670e-630.83Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4083contigH-paniculata_contig4083:230..6453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog2880.D8LBV6
KEGG koko:K09518
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons4
Model size1486
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4083.10542.1prot_H-paniculata_contig4083.10542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4083 271..5410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.7032075-UTR-H-paniculata_contig4083:229..2701622930248.7032075-UTR-H-paniculata_contig4083:229..270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4083 230..270 +
1691481209.4506285-UTR-H-paniculata_contig4083:229..2701691481209.4506285-UTR-H-paniculata_contig4083:229..270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4083 230..270 +
1622930248.7937808-UTR-H-paniculata_contig4083:5410..64531622930248.7937808-UTR-H-paniculata_contig4083:5410..6453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4083 5411..6453 +
1691481209.5048556-UTR-H-paniculata_contig4083:5410..64531691481209.5048556-UTR-H-paniculata_contig4083:5410..6453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4083 5411..6453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.7218394-CDS-H-paniculata_contig4083:270..3201622930248.7218394-CDS-H-paniculata_contig4083:270..320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 271..320 +
1691481209.4641738-CDS-H-paniculata_contig4083:270..3201691481209.4641738-CDS-H-paniculata_contig4083:270..320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 271..320 +
1622930248.7375956-CDS-H-paniculata_contig4083:916..10491622930248.7375956-CDS-H-paniculata_contig4083:916..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 917..1049 +
1691481209.4748747-CDS-H-paniculata_contig4083:916..10491691481209.4748747-CDS-H-paniculata_contig4083:916..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 917..1049 +
1622930248.7578661-CDS-H-paniculata_contig4083:2233..23231622930248.7578661-CDS-H-paniculata_contig4083:2233..2323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 2234..2323 +
1691481209.4862115-CDS-H-paniculata_contig4083:2233..23231691481209.4862115-CDS-H-paniculata_contig4083:2233..2323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 2234..2323 +
1622930248.7766848-CDS-H-paniculata_contig4083:5281..54101622930248.7766848-CDS-H-paniculata_contig4083:5281..5410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 5282..5410 +
1691481209.4961603-CDS-H-paniculata_contig4083:5281..54101691481209.4961603-CDS-H-paniculata_contig4083:5281..5410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4083 5282..5410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4083.10542.1

>prot_H-paniculata_contig4083.10542.1 ID=prot_H-paniculata_contig4083.10542.1|Name=mRNA_H-paniculata_contig4083.10542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MLYSLFGGSYQEDAAFSLHQTTKYPTAKVTTQQPGVVEGINYYVTPKFRQ
LYARDRNQLRRVEKSVTEYFKRQLEYECDDLKHRKSSRVIQAKRRRKSME
TEAYAQQVRDAEDMPLPACQELARKFSSFSEYN*
back to top

mRNA from alignment at H-paniculata_contig4083:230..6453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4083.10542.1 ID=mRNA_H-paniculata_contig4083.10542.1|Name=mRNA_H-paniculata_contig4083.10542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6224bp|location=Sequence derived from alignment at H-paniculata_contig4083:230..6453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGATTGCGTTTCTGCAATTGTTGCCAGTGGCACTGATCATGCTCTAT
TCGCTCTTCGGAGGTTCCTACCAGGAAGACGCGGCTTTTAGGTGTGTGAC
CGTCATTCATCATAGTCGTGGGCGTTAGGCGTTCATGTAGACCGCTTTAT
TTCAGTTGCTCTGTCAGAGGCGTGACTTCATCGCCCCGCCGGACGCAACA
TATTTTGGAGTTACAACAGATGACACCGATCAAGTGGCCGATCTAAATTG
AGTAGTTGCGTTTTTTTTTTTGTTTTGCGAAGTTTTTCTTGAACCATGTA
TAGATAACAATGTGTCGTACGTATTTTGGTTGTTTTTTATATCTTGATTT
TATTTCGGATCGGCCGACATGGATTAGATTCTGTCTACCTTGCTCTCATG
AAGAGGTGATTGTCAATGTTCACGGGGAGGTGAGCAGCTCTCTCTCTCTC
TATCTCTCTCTTTCTGTCTCTTCGTGGTGTAAATGTGTTTTTTTGGGGTT
TTTTTGTAATTTGAATCGGAAATGAGTAAAACATCTTTCGTCATCATGTG
TTGGAAGAATGTAACATTTTTTTTTTTTTCTATTGTTTCCCCTCTTTGTG
CTCTCTCTCTCTCTCTCGCTCGCTCTCTGGATTACTGTCGTCTTCTTCAA
TCCTTCATGTGTATATGTGTATGTATTTTGTCGCCAGCTTGCATCAAACG
ACCAAGTATCCTACCGCCAAGGTAACGACCCAGCAACCGGGGGTGGTGGA
AGGGATTAACTATTATGTGACTCCGAAGTTCAGGCAGTTGTACGCAAGGG
ACCGAAACCAGCTCAGAAGGGTGAGAGGTAGAATTTTGCAAGAGTTGCTC
ACATTCAACGGCTAGCTGAATCTTTGAAACGACTGATTGGACGACGGCAC
ATGTCCGTTGACACCAAATATCCCGACCCCCGACACGGGGTCGGTCAAGC
TGAAGAGAGGATCGGCTGTTGTAGATATCATCATGCCTCCATACACGAGA
TATAAAAGCATGAAAAGATAACTAGGGTTGTATTAACGAAAGAGGGGACT
TCGCTTTTTCTATTTTCGAGGTAAGGGGTTGTTATTAGTCGTTTTCAGAC
GATGAGTTAGTCGTTAGATGCGTGAACAGTTGTGCTCCGCGCTTTCCCGC
CTGTTTGACACCTTTTCCCCCCATAATATATAGGATCTGGAGTATGACGT
GTGATGTAGAATGATGATTAAATTCACCTCGACAGGGAAAGGAAAGATGG
TGGTGATCCACACGTAACGCGTGTGTGATCGATCGATTGTAGGATGTAAA
GGTGACTTGACAATGAGGGTAACTGTCCTCGATCGATGTTGGGTGATTAA
TACCCCTTATATGGGGTATAAAAGGTGGCCACCACATGACGAAGTCCGAA
GAGCCGATACCCCCCCCCCTCCCCTCAAAGATAACGTACCCTGTTGGAAG
ATGCCATCTGAAGACACAAACTGATATTGAAGGCTGTAGTCTTGGTGTGC
GAACCCAAGCCTAAAGTACTCCAGCATGTACTCTGTCTGTAGTGGAGTGA
AGTGTATGTCTACAGTGAACTGCATGACTGTAAGTGACTCTACGGTGAAC
TATATCGCTTCAGTGTCTCTCGATACTGAAGTGCTGCCTGTCTGTAGTGA
ACTGTATCTGAAGAATGGCTGCTGTCTGTCTTCGTAGTCGGGCCATGTAC
ATCGTTTGTTCCTGTCTGTGGAGTGAGGGGGACAAAGACAGCAACCAAAA
ATGGAGGTATACTGAGTATATCTTCAAGCTGCTGAGTTACCTGGTTATTA
TCCACAAACGGAAAAAAAAAAAAGAAACGGGGAAGGTAATTGAAGCTGAT
TTGTTTGGAGTTTCGAGTCTCTTCGTGGAGAAGCTAGACTAAACATGTTT
TTGCCTCTTTCCCTTGAACGGTATGACCACCTGGTTCGTATATTATGTAT
TTTCCAATTTCTTGTGTGGTGCCTTTCTGTCGTGTTTGTGTCATTGTCCA
CTAGGTGGAGAAATCCGTAACGGAATATTTCAAGAGACAACTTGAATACG
AGTGCGACGACTTGAAGCACAGGAAGTCGTCGCGAGTCATTCAGGTGAGT
CAACAGTTTACCTGTGTGGGATGCGTTGGGTTTTGCTCTTGAACCAAGCA
GAGCATCGGTGTTTCTTCAGTCATGTTCACTTCTAAACCGTAACATCCTT
TGATATCGCACTCCCCTGATGTACTTTGCCGAAGCCGATTTTCTCGAGAA
ACAAGAGCCTAGCCTGTGCTGCCGAAGCAGCAGGAGTCTCAAAATATTTC
AACGAGATCTTTCACGCTGATGGTGCTATCGGTGTCATGAGCTAGTAGTA
CCGTCGTGGTCAAGACAAATCGAGTTGAAAAACTGATATCAGGGGGTGCA
ATATTCAAGGATGCTACGGCCTATGGTGTTGGGGCGGTGCTTCAAGCTAT
TTCTTTAACCAAGGTCCATTTCGAGAAGTGGCTCGAATAAAGCTCAAATT
GGGAAGGGCTTGTGTTGTCGCATCCCTGGACGTGCACGATGCGTGATACG
GGATGCCCGTGCTGTACTGTTTAAGGGGGAGATTTTGTGCCGAGTCGCTC
CCAAAAGTGGCCCAAAACGTGAGAAAGGCGGCTCGGCGACTACCCCCCTA
CCGTAGCCTTACTCACTCTGGGTTATTCATCGCTGCGATATGTTAATATT
TGTGTGTTCGTTTTTTGTCATCATTCGTGCGCCTCTTGTATTGTAATTTG
GGCCTGTCCTGAAAAGCGAAAAATATTAGTCGACGATTTATTTCTACACG
AATAATCGATGCTGTTTTATCTAGGGATTGTCGTTGGTTCGTGAAACACA
GACTAGAAAAAAAATGTTTGGAAAGTTCAGAGCCAAATCATAGCTCATAA
GTAGAGTAGATTTTGATTAGATAAGGTTATAATCATATCCGTTTTTGTTT
TTTTTTCTTATTAGTAGAATCCTACATGTGTTTTGGGTTAAAGTACATCA
CAAGCGGTGAAAAGGAATACATTGTGACCGAAAAAATAGCATATTTTGGG
TGATTCGTTTTTCAGGAATGCTTCTATCCATGAATCTGGGTTGATGTAGG
TACTTGTGGGAAAATCTTTGGCAAATTCGAGATGCACCAAAATCGAATAA
TACCGTTCAAACAGTGGTATCTCCAAAATGTTTTGTCGGTTCGAAATAAT
GATGGAGAAATTTCATCTCGACACAGGGATTTTTTTTTTCTCTCGAAATG
GTTGACGCAGAAACAGTAGAATTGACCAACAATCGCTAGATGGCACCTCT
GCGGCGATAACACGTCGCGCTAAGACCTCGAATGACGAAACGGTTTGTTG
TGTTGGATATCTCGGCAAAGATGTGGACAATTTTCGGTCACCGGCTTCTT
GTCACAAGGGTTGGACAAAGGAAGAAAAATTTCTGGGTGGAAAAAACTCA
CCCCCAAAAATGGCCTTTTTTTTTTTTTTCGACTGGGTGTTTTTGGTGTG
TTAATAGTCAATCGTGTTAGTTTTCCTTTGAATATCTACTCAATAAACAC
GTAGGATTCTATTTATTTCTGACAAGAACCCAATCGAAAATCGGATATGA
TGAGAACCCTGTCTAATCAAGATCTCCTTTACTTCTAGACAGGGAAAATA
AAGACGTAAAATTGAATCTAGGGGAGAATGGATAAATTGATATATCTGGG
AGGGGGGGTGGGGGGGAAAGCATACCCTCACATCTTGTTCAATCATGGAT
ATATGGATCGCAAATGGATCACCTATACTGTCGAGGTTCATGCAAGGTTT
GACCCTTAACCCATAAGTAATGCGCGATCTGGTCATGGTCCACTTCCGGT
TATGGATCCATGGAAATGTTCGAACGCTTTGTTCACTTGATGCAGTAAGG
AGACTCATTCCAATTAACTCTTGGCGCCAATCTTAAAAGCGTTCGACCGC
ATTTCATTTTCGATATATTTATGTTCGGTAGGTTTTTGTTTTTATATCAG
CATAGTTGAATTTCATTTTAAAGTCGAAACATGGCCTCTCGTGTACGCCC
CCGTGTGGTTTGGTGGGGTGGGAGAAGCAGGGCGTGTTTCACAAGCGCCG
CTCCACAAAGCGGTTTTAAAAAAACAAACACGTACTCATGGCTTTAAATG
GTATGCGTTCATGCATCTAAAGAGGTACACAATCCATTACTTGGAACGAC
GGTGCGTTTAAAGGAGGAAAACATGTCTCGATGAGCGGCTCCCTGAAGCG
GGTCAAAACTTTGATCAAGTCGGGTCAACCCCATTATCCCTCATGTCAAC
TCCCGCAATAGACAGGATTTTTGAGTCTAGGATTGCGAAAGTAACAACGT
CGGAGTTCCACCGAGATGGAATGTGGCCTGATATGGTGGACGTTAAGGCA
GAGGAGTTAAATAAAGCAGGTTTGAGCCATATTTGATATTGTAGGAAAGT
GCAATTGACTGTGATCGGAAACCGCTCTGATTGGATAGGAACAAAGTTTC
ATGTTCCTCGACATAACGCGTGGTAAATGGCCTACTAAACAAGCATGACA
TGCTCAAGATGAGCCCCCCCCCACCCCCCACCCCCCACCGCCCACCGCCC
GCCCCCTACTCCCAGCCCGACTCAACACACCAACTGAAATGGAAAGTACC
GAGAAAGGGTCATCACGACGAATTATCTTTGATCTCGCAAAATTGTTCTT
CACTGCTCAAGTACCTGGCTCTAGGGTCATTTTCCACATAGCGTTTGGAA
GGTTCTCCGTCGTGGTGATAATATGAAACGGCGTATATGTCGGGGTGGTG
GTGGTGAGGGGGAGGTTCCACTTTTTTCTGTTGGCATATCCGTTTTATTT
TTTTATTTTTTTCCCACCTTCCGAAAGTATTGGGTAGTTTCGTCACCTGT
CTCCTTTTTTTTTTTTTGTCAGGTCAAAAATGCTGCAAACGTTGACGACA
TTCTCGTGATATTATATGCTGTGACGTTAAGAAAGAAATCTTCGTTCCTA
TATCGGTCGGTTCTTGTTTAATCATATAAATTTATATCTAATTATAACAC
AGGCGAAGCGACGGAGAAAGTCCATGGAAACAGAAGCCTACGCCCAGCAG
GTTCGCGATGCAGAAGACATGCCGCTGCCTGCTTGTCAAGAATTAGCTAG
AAAATTCTCGTCGTTCAGCGAGTACAATTGATTTTTTTTTTTTCGGGCCG
GGGGGATGGCATGGCAGGAAATGTGGAAGGATTGGACCGTGGATTTTTTA
TTTTTATTATTAACCCCATGTGTCAATTTTTGTCACATTTATTGTTGTGT
GAATCGGGAAGGAAAGATTGAGCGAAGCATTTTTGTTGTTGTGTTTTTTT
TTTCGTTTTCAGCAAGTGACATGTTCAGTTTGCGAGAGTCTTCCCCCCTT
GCCTTTTCCCACCCTCGTCAAGATATGGAATTTCGTATCAATCTCTTCTT
CTTTTTTTTTTCACGTAGAGGATAGAATGGACAGTGTTTTTTGACCTGTA
TAAAGAAAAGGAATGGGCAGTTACTTCCATGATTCTTTTTCCTGATAACA
GCTACAGCAAAGACTAACCAGGGAGTAGAGCTACAGCACTTGTGGGGGGG
GGGCGTATTGTACATTTCTTGCTTGGAAAGATACAGCAATTCAGTGGTGA
GGTGCTGGGAGGGCACTGTACGCTACGTGGTCTGCAGCTCCTTCATTGGC
AGCCTCCTTTTCTCTTTGTTGTTTGTGCTTTCTTGAATACGAAAAGCAAA
CATGTGACGGTTGCGACACTTGGGGTGTTCGTGTACAAAAAACGACGCTG
AACACACGACAGTGATGAAATACAGGTGTCGCGTCCGGTGTGTGCCGCCA
GGCTTGTCACGCAGCGGTTTTTTGTACACTCGGGGTATTTTTCCAGTCTG
TTGTTGTCCATCTTCTGTGTCGTCGCTTCTAGACGTCATTCTGTACACTG
CGTCGTATTTTCGTCCAACATGCCTGCACATACATGTCGTCTTCGTTGTC
GTTTCTCCCCTGCACCACACACGCGCTCCATGGATGTTTGGTGAGATCCG
CTCAGCACTTTCATAGCCTGACAGTTCGTGATGTCCGACGGCATTCGACG
CTGTATTTACATCGGCAGCGTGCCACGCAGGCCTCCCCACCCGACCGTTG
ACCAAAATATGGAGAAAATTTTAAGAACTGTTTTGGACGATTACTGGGGT
AAGCTACCTTGTGCTGACGGGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4083:230..6453+

>mRNA_H-paniculata_contig4083.10542.1 ID=mRNA_H-paniculata_contig4083.10542.1|Name=mRNA_H-paniculata_contig4083.10542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig4083:230..6453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTATTCGCTCTTCGGAGGTTCCTACCAGGAAGACGCGGCTTTTAG
ATGCTCTATTCGCTCTTCGGAGGTTCCTACCAGGAAGACGCGGCTTTTAG
CTTGCATCAAACGACCAAGTATCCTACCGCCAAGGTAACGACCCAGCAAC
CGGGGGTGGTGGAAGGGATTAACTATTATGTGACTCCGAAGTTCAGGCAG
TTGTACGCAAGGGACCGAAACCAGCTCAGAAGGCTTGCATCAAACGACCA
AGTATCCTACCGCCAAGGTAACGACCCAGCAACCGGGGGTGGTGGAAGGG
ATTAACTATTATGTGACTCCGAAGTTCAGGCAGTTGTACGCAAGGGACCG
AAACCAGCTCAGAAGGGTGGAGAAATCCGTAACGGAATATTTCAAGAGAC
AACTTGAATACGAGTGCGACGACTTGAAGCACAGGAAGTCGTCGCGAGTC
ATTCAGGTGGAGAAATCCGTAACGGAATATTTCAAGAGACAACTTGAATA
CGAGTGCGACGACTTGAAGCACAGGAAGTCGTCGCGAGTCATTCAGGCGA
AGCGACGGAGAAAGTCCATGGAAACAGAAGCCTACGCCCAGCAGGTTCGC
GATGCAGAAGACATGCCGCTGCCTGCTTGTCAAGAATTAGCTAGAAAATT
CTCGTCGTTCAGCGAGTACAATTGAGCGAAGCGACGGAGAAAGTCCATGG
AAACAGAAGCCTACGCCCAGCAGGTTCGCGATGCAGAAGACATGCCGCTG
CCTGCTTGTCAAGAATTAGCTAGAAAATTCTCGTCGTTCAGCGAGTACAA
TTGA
back to top