mRNA_H-paniculata_contig4078.10528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4078.10528.1
Unique NamemRNA_H-paniculata_contig4078.10528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.810e-37
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            M ED GVQISFD++CRIRVLDPE FKHSE LEEECRGFV+KI+ FN S H+I EVLHENAARIDK+KLRAIGQRNKV
Sbjct:    1 MNEDNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKV 77          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 9.960e-23
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            VQ+SFD++CR+RVLDP+ FKHSE LEE C+ F  K++ FN + H I  VL  +A+RI+KQKLRAIG RNKV
Sbjct:   10 VQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKV 80          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 1.000e-19
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 DTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKVHTRRRFR 252
            D  V+ISFDD+ +IRVLD E FKH+E LE EC  FV KI+ F+ + HS+ EVL + A RI+  KL+AIGQRN+V   R  R
Sbjct:    2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENR 82          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-18
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 EDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            E+  V I FD++ R+RVLDPE FKH+E L E+C GFV+KI+ F+ + H + +VL   A +I+++KLRAIGQRN V
Sbjct:    2 EENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMV 76          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-17
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            M  D  V I FDD+C+IRVL PE F H++ L E+C  FVNKI  F+ + H + E+L   A  I+ +KLR IGQRN+V
Sbjct:    5 MKNDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRV 81          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A812IV98_SYMPI (Ift20 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812IV98_SYMPI)

HSP 1 Score: 72.0 bits (175), Expect = 1.560e-14
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNK 228
            + I+FD+D RIRV+  E FK +E+LE EC GF  KI+ F+ +   + EVL   A +I+++KLRAIGQRN+
Sbjct:    6 IDITFDEDNRIRVMPKEKFKQTESLEAECHGFAEKIQAFSGTVDMLVEVLDGEAQKIEEEKLRAIGQRNR 75          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A8J1ZXM1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZXM1_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 1.910e-14
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   10 DTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRN 225
            D+ +QI+FD D  IRVLDPE FK  E L +EC+ F  KI  F  +  ++ +VL   A RI+ +KLRAIGQ+N
Sbjct:    3 DSDIQITFDADNHIRVLDPEKFKQMENLSQECQNFTEKIHQFGTTVQTLVDVLDGQAKRIEFEKLRAIGQKN 74          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A7S2BN10_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BN10_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 3.450e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            + I+FDD+ RIRV+  E FK +E LE++C+ F  KIK F  +   + EVL   A +I+ +KLRAIGQRN+ 
Sbjct:   43 IDITFDDENRIRVMPKEKFKQTENLEQQCQNFTEKIKSFGDTVQMLVEVLDGEANKIEYEKLRAIGQRNRA 113          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: A0A812V2P0_9DINO (MP3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V2P0_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 4.480e-13
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   19 VQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            + I+FD+D RIRV+  E FK +E+LE EC GF +KI+ F+ +   + EVL   A +I+++KLRAIGQRN+ 
Sbjct:    6 IDITFDEDNRIRVMPKEKFKQTESLEAECHGFADKIQAFSGTVDMLVEVLDGEAQKIEEEKLRAIGQRNRA 76          
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Match: H3GSG3_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GSG3_PHYRM)

HSP 1 Score: 69.7 bits (169), Expect = 4.610e-13
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 GEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAHSIAEVLHENAARIDKQKLRAIGQRNKV 231
            G++    I FDDDC++RVLD ++  H++ L++E   F  K++ F++    + EV+   A RI+++KL+AIGQRN+V
Sbjct:    4 GDNQLPSICFDDDCQVRVLDKDNITHTQELDQESNQFATKLEEFHEIVKGVLEVMEGQAKRIEREKLKAIGQRNRV 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4078.10528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA8_ECTSI6.810e-3781.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJD0_9STRA9.960e-2361.97Intraflagellar transport protein 20 n=1 Tax=Tribon... [more]
A0A6V2PVC6_HETAK1.000e-1955.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W6I1_9STRA1.140e-1853.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GG26_9STRA1.050e-1750.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812IV98_SYMPI1.560e-1450.00Ift20 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A8J1ZXM1_9DINO1.910e-1450.00Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S2BN10_9DINO3.450e-1347.89Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A812V2P0_9DINO4.480e-1349.30MP3 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
H3GSG3_PHYRM4.610e-1340.79Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4078contigH-paniculata_contig4078:12809..13115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog2880.D7FRA8
Preferred nameIFT20
KEGG koko:K16473
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001655,GO:0001736,GO:0001738,GO:0001750,GO:0001822,GO:0002009,GO:0002046,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005801,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005902,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007164,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008283,GO:0008306,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009894,GO:0009966,GO:0009987,GO:0010506,GO:0010646,GO:0010970,GO:0012505,GO:0014706,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016241,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031503,GO:0031514,GO:0031984,GO:0032391,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034067,GO:0034613,GO:0035051,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0036372,GO:0036477,GO:0042073,GO:0042461,GO:0042490,GO:0042692,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044292,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048583,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051716,GO:0055007,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060429,GO:0060491,GO:0060537,GO:0060828,GO:0061061,GO:0061351,GO:0061512,GO:0061842,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072001,GO:0072359,GO:0072657,GO:0072659,GO:0090102,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098791,GO:0098858,GO:0098862,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902636,GO:1990778,GO:2000785
EggNOG free text desc.opsin transport
EggNOG OGs2AFZ8@1,2RYYR@2759
Ec32 ortholog descriptionIntraflagellar transport protein 20
Ec32 orthologEc-26_002460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size307
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.0947037-CDS-H-paniculata_contig4078:12808..131081622930247.0947037-CDS-H-paniculata_contig4078:12808..13108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4078 12809..13108 +
1691481208.8969383-CDS-H-paniculata_contig4078:12808..131081691481208.8969383-CDS-H-paniculata_contig4078:12808..13108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4078 12809..13108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.1151216-UTR-H-paniculata_contig4078:13108..131151622930247.1151216-UTR-H-paniculata_contig4078:13108..13115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4078 13109..13115 +
1691481208.9123452-UTR-H-paniculata_contig4078:13108..131151691481208.9123452-UTR-H-paniculata_contig4078:13108..13115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4078 13109..13115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4078.10528.1prot_H-paniculata_contig4078.10528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4078 12809..13108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4078.10528.1

>prot_H-paniculata_contig4078.10528.1 ID=prot_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MGEDTGVQISFDDDCRIRVLDPEHFKHSETLEEECRGFVNKIKHFNKSAH
SIAEVLHENAARIDKQKLRAIGQRNKVHTRRRFRGHDLHTHCARYVSIQ*
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mRNA from alignment at H-paniculata_contig4078:12809..13115+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4078.10528.1 ID=mRNA_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=307bp|location=Sequence derived from alignment at H-paniculata_contig4078:12809..13115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAAGATACTGGTGTTCAGATATCGTTTGACGATGACTGTCGCAT TCGCGTCCTCGACCCCGAACATTTCAAGCACTCTGAAACGCTCGAAGAGG AGTGTCGCGGATTTGTCAACAAGATAAAACATTTCAATAAGTCGGCGCAC AGCATTGCGGAGGTGTTGCACGAAAATGCTGCCCGCATCGACAAGCAGAA GCTGCGAGCCATTGGGCAACGCAATAAGGTACATACACGTAGAAGGTTCC GGGGTCACGATCTTCATACCCACTGCGCTCGCTATGTCTCAATCCAGTAA AGCTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4078:12809..13115+

>mRNA_H-paniculata_contig4078.10528.1 ID=mRNA_H-paniculata_contig4078.10528.1|Name=mRNA_H-paniculata_contig4078.10528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig4078:12809..13115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAAGATACTGGTGTTCAGATATCGTTTGACGATGACTGTCGCAT
TCGCGTCCTCGACCCCGAACATTTCAAGCACTCTGAAACGCTCGAAGAGG
AGTGTCGCGGATTTGTCAACAAGATAAAACATTTCAATAAGTCGGCGCAC
AGCATTGCGGAGGTGTTGCACGAAAATGCTGCCCGCATCGACAAGCAGAA
GCTGCGAGCCATTGGGCAACGCAATAAGGTACATACACGTAGAAGGTTCC
GGGGTCACGATCTTCATACCCACTGCGCTCGCTATGTCTCAATCCAGTAA
ATGGGCGAAGATACTGGTGTTCAGATATCGTTTGACGATGACTGTCGCAT
TCGCGTCCTCGACCCCGAACATTTCAAGCACTCTGAAACGCTCGAAGAGG
AGTGTCGCGGATTTGTCAACAAGATAAAACATTTCAATAAGTCGGCGCAC
AGCATTGCGGAGGTGTTGCACGAAAATGCTGCCCGCATCGACAAGCAGAA
GCTGCGAGCCATTGGGCAACGCAATAAGGTACATACACGTAGAAGGTTCC
GGGGTCACGATCTTCATACCCACTGCGCTCGCTATGTCTCAATCCAGTAA
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