mRNA_H-paniculata_contig40708.10519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40708.10519.1
Unique NamemRNA_H-paniculata_contig40708.10519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.070e-23
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  104 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 197
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BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 100 bits (250), Expect = 6.500e-23
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP G KA+R KWI K+K+K DGS+ +YKARLV QGF Q EG DF +T APVAR+ST+R +  LAA HD  +  MD   A+LN  + EE+++K P
Sbjct:   11 LPPGCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQP 104
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BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 100 bits (250), Expect = 8.460e-23
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    4 PAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPVEE-LFVKLPP 282
            P  RK I +KW+FK K   DG V +YKARLVAQGFSQVEG D+ ET APV + +++R +  LAA HD+E+  MD  +A+LN  +EE +++K+PP
Sbjct: 1033 PRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPP 1126
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BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8C149_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C149_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.120e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  243 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 336
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.140e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  745 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 838
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.140e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  487 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 580
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.140e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  579 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 672
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A177VNF7_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VNF7_9BASI)

HSP 1 Score: 100 bits (249), Expect = 1.150e-22
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLPP 282
            LP G+ +I  +W++K KL EDG+ +RYKARLVAQGFSQV G D+ ET AP ARM T+R V  + A+HD  +  MD   AYL   + +E++++LPP
Sbjct:  738 LPKGKASIGCRWVYKLKLDEDGNASRYKARLVAQGFSQVPGRDYTETYAPTARMDTVRLVLTICAQHDLIVHQMDVVVAYLQGHLKDEIYMRLPP 832
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8BG36_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BG36_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.150e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct:  769 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 862
[Close]
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Match: A0A5E8BEA2_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BEA2_9ASCO)

HSP 1 Score: 100 bits (249), Expect = 1.150e-22
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAPVARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPV-EELFVKLP 279
            LP GRKAI +KW+FK K K DGS+ RYKARLV  GFSQVEG D+ ET APV R  T+R V  +AA+  F++  MD + A+LN  + E+++++ P
Sbjct: 1121 LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 1214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40708.10519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E8C1W8_9ASCO1.070e-2353.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2LJ48_TANCI6.500e-2355.32Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A0C2WN23_AMAMK8.460e-2353.19Integrase catalytic domain-containing protein (Fra... [more]
A0A5E8C149_9ASCO1.120e-2253.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C4W4_9ASCO1.140e-2253.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8CAT7_9ASCO1.140e-2253.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4Z1_9ASCO1.140e-2253.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A177VNF7_9BASI1.150e-2251.58Integrase catalytic domain-containing protein n=2 ... [more]
A0A5E8BG36_9ASCO1.150e-2253.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8BEA2_9ASCO1.150e-2253.19Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40708contigH-paniculata_contig40708:3..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.5
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog28532.XP_010526678.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.8107026-CDS-H-paniculata_contig40708:2..2841622930245.8107026-CDS-H-paniculata_contig40708:2..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40708 3..284 +
1691481208.3576922-CDS-H-paniculata_contig40708:2..2841691481208.3576922-CDS-H-paniculata_contig40708:2..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40708 3..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40708.10519.1prot_H-paniculata_contig40708.10519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40708 3..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40708.10519.1

>prot_H-paniculata_contig40708.10519.1 ID=prot_H-paniculata_contig40708.10519.1|Name=mRNA_H-paniculata_contig40708.10519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
LPAGRKAIRTKWIFKQKLKEDGSVARYKARLVAQGFSQVEGEDFLETSAP
VARMSTLRTVFRLAAEHDFELEGMDADAAYLNAPVEELFVKLPP
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mRNA from alignment at H-paniculata_contig40708:3..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40708.10519.1 ID=mRNA_H-paniculata_contig40708.10519.1|Name=mRNA_H-paniculata_contig40708.10519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig40708:3..284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCCGCAGGGCGGAAGGCGATTCGTACAAAATGGATTTTCAAGCAGAA
ACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTC
AAGGTTTTTCCCAGGTGGAGGGTGAAGATTTCTTGGAAACCAGTGCCCCC
GTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGACTGGCCGCAGAACA
TGACTTCGAATTAGAAGGCATGGACGCAGATGCGGCGTATTTGAACGCCC
CGGTAGAAGAGCTGTTTGTTAAGCTACCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig40708:3..284+

>mRNA_H-paniculata_contig40708.10519.1 ID=mRNA_H-paniculata_contig40708.10519.1|Name=mRNA_H-paniculata_contig40708.10519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig40708:3..284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCCGCAGGGCGGAAGGCGATTCGTACAAAATGGATTTTCAAGCAGAA
ACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTC
AAGGTTTTTCCCAGGTGGAGGGTGAAGATTTCTTGGAAACCAGTGCCCCC
GTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGACTGGCCGCAGAACA
TGACTTCGAATTAGAAGGCATGGACGCAGATGCGGCGTATTTGAACGCCC
CGGTAGAAGAGCTGTTTGTTAAGCTACCCCCCTTACCCGCAGGGCGGAAG
GCGATTCGTACAAAATGGATTTTCAAGCAGAAACTGAAGGAGGACGGCAG
CGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCCCAGGTGG
AGGGTGAAGATTTCTTGGAAACCAGTGCCCCCGTAGCTCGCATGTCGACG
TTACGTACTGTTTTTAGACTGGCCGCAGAACATGACTTCGAATTAGAAGG
CATGGACGCAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAGCTGTTTG
TTAAGCTACCCCCC
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