mRNA_H-paniculata_contig40388.10451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 168 bits (425), Expect = 5.180e-44 Identity = 103/303 (33.99%), Postives = 158/303 (52.15%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
F+QV G DF ET APVA+++++ +LAA +D+EL MDV A GR ++ + L +GL RS C+++ R+E LL+ + VDD IAG + V FK IS RF+M DLG + +LGIEV+RDR T+++SQ YI +L R+ + + +T P+ +S + + + + YR ++G LMYA+ GTRPDIA A+ ++ +++P Q + KR+FRYL+ + +TFG ++G +EGF DADW
Sbjct: 184 FTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADW 484
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 157 bits (397), Expect = 1.000e-40 Identity = 96/302 (31.79%), Postives = 150/302 (49.67%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA--------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRREN-VDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
F Q+ G DFFET A VA M ++R S+ + LE +DVD A G W T+ L+ +G + + +C+Y R GG+T + + YVDD+V+ GR + VDE K I+ RFR+K+LG + +LG+E+ DR ++I+Q Y++ +++R+ CR VTNP + +K+S + + + YR ++G L Y + TRPDIA AV +R +E+P ++ R+ RYL + D GI++GG + F DADW
Sbjct: 66 FLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGR-AGGDTTYICL-YVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADW 365
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 160 bits (404), Expect = 2.220e-40 Identity = 93/227 (40.97%), Postives = 126/227 (55.51%), Query Frame = 3
Query: 237 AGRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGR-RENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKS---SEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLE--GFVDADWA 899
AGR WN TLD L G+G R + +CLY RD+ G+ L VVYVDDL++A R +DE K ++ +F+M+DLG S +LGI +RRDRP I +SQ YI VL RYG +C+ P+ VK SA + D + S G S Y ++G +MYA GTRPDIA V R +P + + KR RYL D+ + F G ++ G+ DADW+
Sbjct: 1136 AGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFL-VVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWS 1361
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A6A3K9V8_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K9V8_9STRA) HSP 1 Score: 159 bits (402), Expect = 4.080e-40 Identity = 104/306 (33.99%), Postives = 162/306 (52.94%), Query Frame = 3
Query: 114 QVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA---------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDE--FKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHG---LEGFVDADWA 899
Q G DF ET APVAR+S+ R ++AAE ++ G D++ A GR WN+ L+ + + G +RS+T CLYF +E ET + ++VYVDD+ +A E+ E FK +++ + +KD G L+ LG+EV ++ + +I ISQG Y RE+L+++G+ + V NP++ +++ AP D+ SE S YR +G+LMY +T TRPD+A + Q +R + P + KR+ RYL+ D GIT+ K + LEG+ D+DWA
Sbjct: 1153 QRPGIDFRETFAPVARLSSFRLLMAIAAELGLDVYGGDINTAYLNAWLDIRQYLRSINGYPCQVNGHMYVVLKALYGLHQFGREWNSELNQWFLDQGYQRSLTEPCLYFKFEE--ETIVYVLVYVDDIFVATNDESYKEQLFK-DLNDAYGLKDQGRLTQYLGVEV--EQTHESIKISQGKYAREILEKFGYQDAHAVGNPMETNMRL-APLEKDEKSE----TSFPYREAIGMLMYLTTSTRPDLAFTLGQLSRFVGKPSAKQVGAVKRVLRYLAGTLDHGITYAKKQDEVDEVVLEGYSDSDWA 1448
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS) HSP 1 Score: 155 bits (392), Expect = 4.360e-40 Identity = 94/302 (31.13%), Postives = 153/302 (50.66%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA--------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDL-VIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
FSQ+ G DFFET APV R+ T R ++A + + + GMDV A GR WN L+ +G+G R ++ C+Y + + G +++ V+VDD+ ++A E + K + ++ + D+G + +LG+++ R+ GTIT+SQ +YI +VL+R G +C+ V P+ V++ + D S + Y VG LMYA+ G+RPDIA AV + ++ +++P E + KR+FRYL D GIT+G + L + D+DW
Sbjct: 54 FSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGD-SRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYGRTMDE--LIPYSDSDW 350
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI) HSP 1 Score: 159 bits (401), Expect = 5.390e-40 Identity = 92/303 (30.36%), Postives = 158/303 (52.15%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------GRN----------------------WNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRE-NVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
FSQ EG D+++T +PVA+++TLRT ++A + ++ L+ +DV A G N W+ DN++ +GLE+S + CLY + + +++YVDD++IAG + E K + + F M+D G L+ LG+++ D+ G + I+Q Y+ +VLK++ C ++ P++ K+ I ++ + ++P YR +VG LMYA G+RPD++ A++ R P + ++ KR+ RY+ + G+ F +SN L GFVDADWA
Sbjct: 843 FSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMIFKLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE-DNKQECNQP-------YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWA 1137
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 159 bits (401), Expect = 5.400e-40 Identity = 101/307 (32.90%), Postives = 154/307 (50.16%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAG-RRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNS-TEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFG-GKSNGHGLEGFVDADWA 899
F Q EG D+ E +PV R +++R S+ A + ELE +DV A R W D+F++G G +R C+Y + G L +V+YVDD++IA ++ + E K +S F MKDLG+ +LG+E+RRDR G +T+SQ YI +VLKR+ C+ + P+ K+S+ E KS E K S Y VG LMYA TRPD+A AV +R + +P + + K I RYL ++G++F +++ +G+ G+VD+D+A
Sbjct: 838 FDQREGIDYNEVFSPVVRHTSIRLLLSIVALKNLELEQLDVKTAFLHGHLEEEIYVEQPEGFEVPGKEDHVCRLKKSLYGLKQYPRQWYKRFDSFMIGHGYDRCSYDECVYLRKFPDGSF-LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHE-CPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSFEKSRASPNGIVGYVDSDYA 1142
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: Q45W64_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W64_PHACR) HSP 1 Score: 158 bits (399), Expect = 1.000e-39 Identity = 98/304 (32.24%), Postives = 154/304 (50.66%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDV--------------------------------------DAAGRNWNNTLDNFLVGI-GLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKIS-APESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
FSQ+ G+D+F+T +PV R T R A +LAA + + + +D+ AGR WN+ L++ L + G RS CLYF + G+ N+ +V +VDD + G R +D FK ++++ F + G+LS +G++V R NG I+I Q Y+ +L+R+G +C+ V+ P+ VK+ PE + P Y +G LMYA+TGTRPDIA AV ++ P ++ K +FRYL D+G+TF +++ + G+ DADWA
Sbjct: 904 FSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMRQAPGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHE--GKLNMALV-HVDDTALYGERSILDRFKADVAKHFAITTNGTLSSFVGLQVTRK--NGAISILQTRYLETILERFGMQDCKPVSTPLDPGVKLEPTPEDQTPADVP-------YAAAIGSLMYAATGTRPDIAFAVQTLSQFTSRPSATHWTAVKHVFRYLKGTTDVGLTFARRADDD-ITGYSDADWA 1194
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A1J3DEI6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DEI6_NOCCA) HSP 1 Score: 154 bits (388), Expect = 2.390e-39 Identity = 93/305 (30.49%), Postives = 151/305 (49.51%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRR-ENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
+SQ +G D+ E +PV R +++R SL A D LE MDV A R W D++++ IG +R Y C + + G +++++YVDD++IAG +++ E K + + F MKDLG+ +LG+E+RR+R + + +SQ +YI++VL+R+ + V+ P+ + +S E K Y VG LMYA TRPD+A AV Q ++ + P +E ++ K + RYL + G+ FGG+ G + GFVD+D+A
Sbjct: 76 YSQRKGVDYDEIFSPVVRHTSIRIVLSLVASWDLHLEQMDVKTAFLHGDLEEEIYMEQPEGLVKPGEEKLVCRLRKSLYGLKQAPRQWYKRFDSYMLKIGYQRC-EYDCCVYVQCRDGHPPIILLLYVDDMLIAGSNMDDIVELKRLLGREFEMKDLGAAKKILGMEIRRERSSKRLWLSQKAYIQKVLERFDMSGAKPVSTPLANHFNLETAQSPKTGEEIKDMEQVPYASAVGCLMYAMVCTRPDLAQAVSQVSKYMSKPGREHWNAVKWVLRYLKGTAEDGLMFGGQECGS-VVGFVDSDYA 378
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: J9M5U1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M5U1_ACYPI) HSP 1 Score: 157 bits (396), Expect = 2.690e-39 Identity = 91/303 (30.03%), Postives = 157/303 (51.82%), Query Frame = 3
Query: 108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------GRN----------------------WNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRE-NVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
FSQ EG D+++T +PVA+++TLRT ++A + ++ L+ +DV A G N W+ DN++ +GL++S + CLY + + +++YVDD++IAG + E K + + F M+D G L+ LG+++ D+ G + I+Q Y+ +VLK++ C ++ P++ K+ I ++ + ++P YR +VG LMYA G+RPD++ A++ R P + ++ KR+ RY + G+ F +SN L GFVDADWA
Sbjct: 1552 FSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMILKLNKSLYGLKQASKCWHERFDNYIAKLGLKQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE-DNKQECNQP-------YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYFKGTLNNGLCFHRQSNSTELIGFVDADWA 1846 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40388.10451.1 >prot_H-paniculata_contig40388.10451.1 ID=prot_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp MDFQAETEGGRQRGTLQSATGGSRFSQVEGEDFFETSAPVARMSTLRTAFback to top mRNA from alignment at H-paniculata_contig40388:39..1118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40388.10451.1 ID=mRNA_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig40388:39..1118- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40388:39..1118- >mRNA_H-paniculata_contig40388.10451.1 ID=mRNA_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig40388:39..1118- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |