mRNA_H-paniculata_contig40388.10451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40388.10451.1
Unique NamemRNA_H-paniculata_contig40388.10451.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 168 bits (425), Expect = 5.180e-44
Identity = 103/303 (33.99%), Postives = 158/303 (52.15%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
            F+QV G DF ET APVA+++++    +LAA +D+EL  MDV  A                                        GR ++  +   L  +GL RS    C+++ R+E     LL+ + VDD  IAG +  V  FK  IS RF+M DLG +  +LGIEV+RDR   T+++SQ  YI  +L R+   + + +T P+     +S  +      + +   +  YR ++G LMYA+ GTRPDIA A+   ++ +++P Q  +   KR+FRYL+   +  +TFG  ++G  +EGF DADW
Sbjct:  184 FTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADW 484          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 157 bits (397), Expect = 1.000e-40
Identity = 96/302 (31.79%), Postives = 150/302 (49.67%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA--------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRREN-VDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
            F Q+ G DFFET A VA M ++R   S+     + LE +DVD A                                      G  W  T+   L+ +G +   + +C+Y  R  GG+T  + + YVDD+V+ GR +  VDE K  I+ RFR+K+LG +  +LG+E+  DR    ++I+Q  Y++ +++R+    CR VTNP +  +K+S  +      +    +   YR ++G L Y +  TRPDIA AV   +R +E+P    ++   R+ RYL +  D GI++GG    +    F DADW
Sbjct:   66 FLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGR-AGGDTTYICL-YVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADW 365          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 160 bits (404), Expect = 2.220e-40
Identity = 93/227 (40.97%), Postives = 126/227 (55.51%), Query Frame = 3
Query:  237 AGRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGR-RENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKS---SEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLE--GFVDADWA 899
            AGR WN TLD  L G+G  R  + +CLY  RD+ G+   L VVYVDDL++A   R  +DE K  ++ +F+M+DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG  +C+    P+   VK SA +  D +   S    G S  Y  ++G +MYA  GTRPDIA  V    R   +P +  +   KR  RYL    D+ + F G      ++  G+ DADW+
Sbjct: 1136 AGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFL-VVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWS 1361          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A6A3K9V8_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K9V8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.080e-40
Identity = 104/306 (33.99%), Postives = 162/306 (52.94%), Query Frame = 3
Query:  114 QVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA---------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDE--FKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHG---LEGFVDADWA 899
            Q  G DF ET APVAR+S+ R   ++AAE   ++ G D++ A                                       GR WN+ L+ + +  G +RS+T  CLYF  +E  ET + ++VYVDD+ +A   E+  E  FK +++  + +KD G L+  LG+EV  ++ + +I ISQG Y RE+L+++G+ +   V NP++  +++ AP   D+ SE     S  YR  +G+LMY +T TRPD+A  + Q +R +  P  +     KR+ RYL+   D GIT+  K +      LEG+ D+DWA
Sbjct: 1153 QRPGIDFRETFAPVARLSSFRLLMAIAAELGLDVYGGDINTAYLNAWLDIRQYLRSINGYPCQVNGHMYVVLKALYGLHQFGREWNSELNQWFLDQGYQRSLTEPCLYFKFEE--ETIVYVLVYVDDIFVATNDESYKEQLFK-DLNDAYGLKDQGRLTQYLGVEV--EQTHESIKISQGKYAREILEKFGYQDAHAVGNPMETNMRL-APLEKDEKSE----TSFPYREAIGMLMYLTTSTRPDLAFTLGQLSRFVGKPSAKQVGAVKRVLRYLAGTLDHGITYAKKQDEVDEVVLEGYSDSDWA 1448          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 155 bits (392), Expect = 4.360e-40
Identity = 94/302 (31.13%), Postives = 153/302 (50.66%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA--------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDL-VIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADW 896
            FSQ+ G DFFET APV R+ T R   ++A + +  + GMDV  A                                      GR WN  L+   +G+G  R ++  C+Y  + + G   +++ V+VDD+ ++A   E +   K  + ++  + D+G +  +LG+++ R+   GTIT+SQ +YI +VL+R G  +C+ V  P+   V++    + D S    +     Y   VG LMYA+ G+RPDIA AV + ++ +++P  E  +  KR+FRYL    D GIT+G   +   L  + D+DW
Sbjct:   54 FSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGD-SRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYGRTMDE--LIPYSDSDW 350          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 159 bits (401), Expect = 5.390e-40
Identity = 92/303 (30.36%), Postives = 158/303 (52.15%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------GRN----------------------WNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRE-NVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
            FSQ EG D+++T +PVA+++TLRT  ++A + ++ L+ +DV  A                G N                      W+   DN++  +GLE+S +  CLY   +      + +++YVDD++IAG     + E K  + + F M+D G L+  LG+++  D+  G + I+Q  Y+ +VLK++    C  ++ P++ K+ I   ++  + ++P       YR +VG LMYA  G+RPD++ A++   R    P +  ++  KR+ RY+    + G+ F  +SN   L GFVDADWA
Sbjct:  843 FSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMIFKLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE-DNKQECNQP-------YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWA 1137          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 159 bits (401), Expect = 5.400e-40
Identity = 101/307 (32.90%), Postives = 154/307 (50.16%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAG-RRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNS-TEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFG-GKSNGHGLEGFVDADWA 899
            F Q EG D+ E  +PV R +++R   S+ A  + ELE +DV  A                                         R W    D+F++G G +R     C+Y  +   G   L +V+YVDD++IA   ++ + E K  +S  F MKDLG+   +LG+E+RRDR  G +T+SQ  YI +VLKR+    C+ +  P+    K+S+ E   KS E K   S   Y   VG LMYA   TRPD+A AV   +R + +P +  +   K I RYL    ++G++F   +++ +G+ G+VD+D+A
Sbjct:  838 FDQREGIDYNEVFSPVVRHTSIRLLLSIVALKNLELEQLDVKTAFLHGHLEEEIYVEQPEGFEVPGKEDHVCRLKKSLYGLKQYPRQWYKRFDSFMIGHGYDRCSYDECVYLRKFPDGSF-LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHE-CPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSFEKSRASPNGIVGYVDSDYA 1142          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: Q45W64_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W64_PHACR)

HSP 1 Score: 158 bits (399), Expect = 1.000e-39
Identity = 98/304 (32.24%), Postives = 154/304 (50.66%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDV--------------------------------------DAAGRNWNNTLDNFLVGI-GLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKIS-APESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
            FSQ+ G+D+F+T +PV R  T R A +LAA  + + + +D+                                        AGR WN+ L++ L  + G  RS    CLYF  +  G+ N+ +V +VDD  + G R  +D FK ++++ F +   G+LS  +G++V R   NG I+I Q  Y+  +L+R+G  +C+ V+ P+   VK+   PE    +  P       Y   +G LMYA+TGTRPDIA AV   ++    P    ++  K +FRYL    D+G+TF  +++   + G+ DADWA
Sbjct:  904 FSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMRQAPGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHE--GKLNMALV-HVDDTALYGERSILDRFKADVAKHFAITTNGTLSSFVGLQVTRK--NGAISILQTRYLETILERFGMQDCKPVSTPLDPGVKLEPTPEDQTPADVP-------YAAAIGSLMYAATGTRPDIAFAVQTLSQFTSRPSATHWTAVKHVFRYLKGTTDVGLTFARRADDD-ITGYSDADWA 1194          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: A0A1J3DEI6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DEI6_NOCCA)

HSP 1 Score: 154 bits (388), Expect = 2.390e-39
Identity = 93/305 (30.49%), Postives = 151/305 (49.51%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------------------------------GRNWNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRR-ENVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
            +SQ +G D+ E  +PV R +++R   SL A  D  LE MDV  A                                         R W    D++++ IG +R   Y C  + +   G   +++++YVDD++IAG   +++ E K  + + F MKDLG+   +LG+E+RR+R +  + +SQ +YI++VL+R+     + V+ P+     +   +S     E K      Y   VG LMYA   TRPD+A AV Q ++ +  P +E ++  K + RYL    + G+ FGG+  G  + GFVD+D+A
Sbjct:   76 YSQRKGVDYDEIFSPVVRHTSIRIVLSLVASWDLHLEQMDVKTAFLHGDLEEEIYMEQPEGLVKPGEEKLVCRLRKSLYGLKQAPRQWYKRFDSYMLKIGYQRC-EYDCCVYVQCRDGHPPIILLLYVDDMLIAGSNMDDIVELKRLLGREFEMKDLGAAKKILGMEIRRERSSKRLWLSQKAYIQKVLERFDMSGAKPVSTPLANHFNLETAQSPKTGEEIKDMEQVPYASAVGCLMYAMVCTRPDLAQAVSQVSKYMSKPGREHWNAVKWVLRYLKGTAEDGLMFGGQECGS-VVGFVDSDYA 378          
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Match: J9M5U1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M5U1_ACYPI)

HSP 1 Score: 157 bits (396), Expect = 2.690e-39
Identity = 91/303 (30.03%), Postives = 157/303 (51.82%), Query Frame = 3
Query:  108 FSQVEGEDFFETSAPVARMSTLRTAFSLAAEHDFELEGMDVDAA----------------GRN----------------------WNNTLDNFLVGIGLERSITYSCLYFSRDEGGETNLLMVVYVDDLVIAGRRE-NVDEFKHNISQRFRMKDLGSLSCVLGIEVRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESADKSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*AVHQAARRLEDPCQEDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEGFVDADWA 899
            FSQ EG D+++T +PVA+++TLRT  ++A + ++ L+ +DV  A                G N                      W+   DN++  +GL++S +  CLY   +      + +++YVDD++IAG     + E K  + + F M+D G L+  LG+++  D+  G + I+Q  Y+ +VLK++    C  ++ P++ K+ I   ++  + ++P       YR +VG LMYA  G+RPD++ A++   R    P +  ++  KR+ RY     + G+ F  +SN   L GFVDADWA
Sbjct: 1552 FSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMILKLNKSLYGLKQASKCWHERFDNYIAKLGLKQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE-DNKQECNQP-------YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYFKGTLNNGLCFHRQSNSTELIGFVDADWA 1846          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40388.10451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY5.180e-4433.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL1.000e-4031.79Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A1M2VT18_TRAPU2.220e-4040.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3K9V8_9STRA4.080e-4033.99Integrase catalytic domain-containing protein n=2 ... [more]
A0A284QR55_ARMOS4.360e-4031.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
J9KJ72_ACYPI5.390e-4030.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A2U1MW82_ARTAN5.400e-4032.90Retrovirus-related Pol polyprotein from transposon... [more]
Q45W64_PHACR1.000e-3932.24Polyprotein n=1 Tax=Phanerochaete chrysosporium (s... [more]
A0A1J3DEI6_NOCCA2.390e-3930.49Retrovirus-related Pol polyprotein from transposon... [more]
J9M5U1_ACYPI2.690e-3930.03Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40388contigH-paniculata_contig40388:39..1118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog164328.Phyra72549
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size899
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40388.10451.1prot_H-paniculata_contig40388.10451.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40388 204..1083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930235.8679261-UTR-H-paniculata_contig40388:38..2031622930235.8679261-UTR-H-paniculata_contig40388:38..203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40388 39..203 -
1691481203.7355545-UTR-H-paniculata_contig40388:38..2031691481203.7355545-UTR-H-paniculata_contig40388:38..203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40388 39..203 -
1622930235.9203753-UTR-H-paniculata_contig40388:1083..11181622930235.9203753-UTR-H-paniculata_contig40388:1083..1118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40388 1084..1118 -
1691481203.775302-UTR-H-paniculata_contig40388:1083..11181691481203.775302-UTR-H-paniculata_contig40388:1083..1118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40388 1084..1118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930235.8801851-CDS-H-paniculata_contig40388:203..2851622930235.8801851-CDS-H-paniculata_contig40388:203..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 204..285 -
1691481203.7515028-CDS-H-paniculata_contig40388:203..2851691481203.7515028-CDS-H-paniculata_contig40388:203..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 204..285 -
1622930235.8951461-CDS-H-paniculata_contig40388:345..7591622930235.8951461-CDS-H-paniculata_contig40388:345..759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 346..759 -
1691481203.7594793-CDS-H-paniculata_contig40388:345..7591691481203.7594793-CDS-H-paniculata_contig40388:345..759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 346..759 -
1622930235.9082255-CDS-H-paniculata_contig40388:880..10831622930235.9082255-CDS-H-paniculata_contig40388:880..1083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 881..1083 -
1691481203.7672412-CDS-H-paniculata_contig40388:880..10831691481203.7672412-CDS-H-paniculata_contig40388:880..1083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40388 881..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40388.10451.1

>prot_H-paniculata_contig40388.10451.1 ID=prot_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MDFQAETEGGRQRGTLQSATGGSRFSQVEGEDFFETSAPVARMSTLRTAF
SLAAEHDFELEGMDVDAAGRNWNNTLDNFLVGIGLERSITYSCLYFSRDE
GGETNLLMVVYVDDLVIAGRRENVDEFKHNISQRFRMKDLGSLSCVLGIE
VRRDRPNGTITISQGSYIREVLKRYGFYECRGVTNPVKGKVKISAPESAD
KSSEPKSGNSTEYRGMVGLLMYASTGTRPDIA*
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mRNA from alignment at H-paniculata_contig40388:39..1118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40388.10451.1 ID=mRNA_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig40388:39..1118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTACCCGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCG GAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGG CTCAAGGTTCTCCCAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCC CCGTAGCTCGCATGTCGACGTTACGTACTGCTTTTAGCCTGGCCGCAGAA CATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGC CCCGGTAGAAGAAGAGCTGTTTTTTAAGCTACCCCCCGAGTTTGCTGCTA TCTCCCGAGACAAACCATTTGTGCCCCCTGCGTAAAAGCCTGTACGGCCT CAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACAATTTTCTTGTTG GGATAGGACTCGAACGTTCCATTACCTACTCATGCCTCTACTTTTCCCGC GACGAAGGGGGAGAGACAAACCTTCTGATGGTTGTGTATGTTGACGACCT GGTCATTGCTGGTCGTCGTGAGAACGTAGATGAGTTCAAGCATAACATAA GTCAGCGTTTCAGGATGAAAGACTTGGGCTCTCTCTCGTGCGTGTTGGGA ATAGAAGTACGACGTGACCGCCCTAATGGTACAATAACCATCTCGCAGGG TAGCTATATCCGCGAGGTACTAAAACGATACGGTTTTTACGAGTGTCGAG GAGTAACCAACCCTGTAAAGGGAAAAGTGAAGATTTCGGCACCCGAGTCG GCCGACAAGTCCTCCGAACCGAAGTCACTTGGAGCTGTACTGTCGGACAT AGGCGCCGCAGTACAAGAAAACAGCAGAGGGAGAAGTGGCAATTCGACTG AATACAGAGGCATGGTAGGATTGCTCATGTACGCCTCGACAGGAACTAGA CCTGATATAGCATAGGCGGTACACCAAGCAGCACGTCGTTTGGAGGACCC ATGTCAAGAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTA CTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGT CTGGAAGGATTCGTTGATGCCGATTGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig40388:39..1118-

>mRNA_H-paniculata_contig40388.10451.1 ID=mRNA_H-paniculata_contig40388.10451.1|Name=mRNA_H-paniculata_contig40388.10451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig40388:39..1118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACA
AAGCGCGACTGGTGGCTCAAGGTTCTCCCAGGTGGAGGGTGAAGATTTCT
TTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGCTTTT
AGCCTGGCCGCAGAACATGATTTCGAATTAGAAGGCATGGACGTAGATGC
GGCATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCT
ACAAAGCGCGACTGGTGGCTCAAGGTTCTCCCAGGTGGAGGGTGAAGATT
TCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGCT
TTTAGCCTGGCCGCAGAACATGATTTCGAATTAGAAGGCATGGACGTAGA
TGCGGCCGGCCGAAACTGGAATAACACTCTTGACAATTTTCTTGTTGGGA
TAGGACTCGAACGTTCCATTACCTACTCATGCCTCTACTTTTCCCGCGAC
GAAGGGGGAGAGACAAACCTTCTGATGGTTGTGTATGTTGACGACCTGGT
CATTGCTGGTCGTCGTGAGAACGTAGATGAGTTCAAGCATAACATAAGTC
AGCGTTTCAGGATGAAAGACTTGGGCTCTCTCTCGTGCGTGTTGGGAATA
GAAGTACGACGTGACCGCCCTAATGGTACAATAACCATCTCGCAGGGTAG
CTATATCCGCGAGGTACTAAAACGATACGGTTTTTACGAGTGTCGAGGAG
TAACCAACCCTGTAAAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCC
GACAAGTCCTCCGAACCGAACGGCCGAAACTGGAATAACACTCTTGACAA
TTTTCTTGTTGGGATAGGACTCGAACGTTCCATTACCTACTCATGCCTCT
ACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTGATGGTTGTGTAT
GTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAACGTAGATGAGTTCAA
GCATAACATAAGTCAGCGTTTCAGGATGAAAGACTTGGGCTCTCTCTCGT
GCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACAATAACC
ATCTCGCAGGGTAGCTATATCCGCGAGGTACTAAAACGATACGGTTTTTA
CGAGTGTCGAGGAGTAACCAACCCTGTAAAGGGAAAAGTGAAGATTTCGG
CACCCGAGTCGGCCGACAAGTCCTCCGAACCGAAAAGTGGCAATTCGACT
GAATACAGAGGCATGGTAGGATTGCTCATGTACGCCTCGACAGGAACTAG
ACCTGATATAGCATAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTA
GGATTGCTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATAG
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