mRNA_H-paniculata_contig4029.10431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4029.10431.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE) HSP 1 Score: 114 bits (286), Expect = 8.430e-23 Identity = 88/198 (44.44%), Postives = 106/198 (53.54%), Query Frame = 1
Query: 1318 MISVEPFGDQSETIRLESVASRRGGGGXXXXXXXX----TRSFHAIRCFNAQTDMTALELLRKGFVQDDQNDL-------------TSTVAATPIRRLQSIPLLPYLLSGG---DDANVENNNIAGRR--------------------------ESLFDLGLTRRECNSEVRRTVEAFSLNRDQARLLWRCSRWFRCA 1773
M+SV P GD SE +RLE+ A RGG XXXXXXXX +RS HAIRCFNAQTD++AL+LLR G + DD + + L S+P+L +LLSGG DD N N + +FDL LTR E N+EV +TVEAF LNRDQARLLWRC+ WFR A
Sbjct: 1 MLSVGPLGDDSEALRLEATA--RGGAXXXXXXXXXXXXXSRSIHAIRCFNAQTDLSALDLLRNGRLGDDXXXXXXXXXXXXXXXXXNALGRGKGLLDLDSVPVLRFLLSGGLAPDDCNSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRVFDLCLTRGERNAEVSQTVEAFRLNRDQARLLWRCATWFRPA 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4029.10431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4029.10431.1 >prot_H-paniculata_contig4029.10431.1 ID=prot_H-paniculata_contig4029.10431.1|Name=mRNA_H-paniculata_contig4029.10431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=627bp EDQSPHNRVEGSDGADATTMYPVPSLGAANRPIGRPGVSDPSGRRPAFARback to top mRNA from alignment at H-paniculata_contig4029:3553..9541- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4029.10431.1 ID=mRNA_H-paniculata_contig4029.10431.1|Name=mRNA_H-paniculata_contig4029.10431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5989bp|location=Sequence derived from alignment at H-paniculata_contig4029:3553..9541- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4029:3553..9541- >mRNA_H-paniculata_contig4029.10431.1 ID=mRNA_H-paniculata_contig4029.10431.1|Name=mRNA_H-paniculata_contig4029.10431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3762bp|location=Sequence derived from alignment at H-paniculata_contig4029:3553..9541- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |