mRNA_H-paniculata_contig4022.10420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4022.10420.1
Unique NamemRNA_H-paniculata_contig4022.10420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4022.10420.1 vs. uniprot
Match: A0A6H5KM30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM30_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.730e-22
Identity = 75/224 (33.48%), Postives = 94/224 (41.96%), Query Frame = 2 
Query:  509 TPAKCLIVCPTGAEASIVVCLAALLTFFPFPPDRSNETARGNNLEKCKRPQEMEMFGHDAVVDAATTAESGASSENSHVLMGXXXXXATSEDDKRCPRSCSYGSSRDSTTGWQGCGATHPSIAGQSQQPTQQDTGEERGTSDDDKQETQTEDTVSAEQEGRRREGRFEVLARGLT--VTKADVRWRFLLLQEECPWARPPRRLMQQLNEYFMTPGEQSWATLRD 1174
            T  KCL+VCPTGA+AS+VVCL AL+ FFP  P  +  T  GN  ++ ++ Q +      A+V  A  A+ G    NS + +G                                                                                  G F VL R     VTK+ +RWRFLL+Q+ECPWA PPRR MQ+LNEYFMTPGE SW TL D
Sbjct:  564 TAGKCLVVCPTGADASVVVCLCALVAFFPPGPQANTNTPSGNQNQQPQQQQLLSPSSRHALV--ADEADGG----NSGLWLGG---------------------------------------------------------------------------------GGFSVLPRTAAGVVTKSQLRWRFLLMQQECPWAHPPRRSMQELNEYFMTPGEHSWWTLSD 700
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BLAST of mRNA_H-paniculata_contig4022.10420.1 vs. uniprot
Match: D7G7K2_ECTSI (Transferase, transferring pentosyl groups, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.850e-20
Identity = 74/223 (33.18%), Postives = 85/223 (38.12%), Query Frame = 2 
Query:  518 KCLIVCPTGAEASIVVCLAALLTFFPFPPDRSNETARGNNLEKCKRPQEMEMFG--HDAVVDAATTAESGASSENSHVLMGXXXXXATSEDDKRCPRSCSYGSSRDSTTGWQGCGATHPSIAGQSQQPTQQDTGEERGTSDDDKQETQTEDTVSAEQEGRRREGRFEVLARGLT--VTKADVRWRFLLLQEECPWARPPRRLMQQLNEYFMTPGEQSWATLRD 1174
            KCL+VC TGA+AS+VVCL AL+ FFP  P  S  T  GN          +      H  V D     +SG                                        W G                                                  GRF VL R     VTK+ +RWRFLL+Q+ECPWARPPRR MQ+LNEYFMTPGE SW TL D
Sbjct:  387 KCLVVCATGADASVVVCLCALVAFFPPGPQASTNTPSGNRXXXXXXXXXLPSPSSRHALVADETDGGDSGL---------------------------------------WLGG-------------------------------------------------GRFSVLRRSAAGVVTKSQLRWRFLLMQQECPWARPPRRSMQELNEYFMTPGEHSWWTLSD 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4022.10420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM30_9PHAE6.730e-2233.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K2_ECTSI2.850e-2033.18Transferase, transferring pentosyl groups, putativ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4022contigH-paniculata_contig4022:10160..12126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue5.5e-19
Seed eggNOG ortholog2880.D7G7K2
Preferred nameRIT1
KEGG koko:K15463
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
EggNOG free text desc.tRNA A64-2'-O-ribosylphosphate transferase activity
EggNOG OGsKOG2634@1,KOG2634@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size1252
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4022.10420.1prot_H-paniculata_contig4022.10420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4022 10347..12099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.9351237-UTR-H-paniculata_contig4022:10159..103461622930231.9351237-UTR-H-paniculata_contig4022:10159..10346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4022 10160..10346 +
1691481201.9029138-UTR-H-paniculata_contig4022:10159..103461691481201.9029138-UTR-H-paniculata_contig4022:10159..10346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4022 10160..10346 +
1622930231.981944-UTR-H-paniculata_contig4022:12099..121261622930231.981944-UTR-H-paniculata_contig4022:12099..12126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4022 12100..12126 +
1691481201.939037-UTR-H-paniculata_contig4022:12099..121261691481201.939037-UTR-H-paniculata_contig4022:12099..12126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4022 12100..12126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.9531193-CDS-H-paniculata_contig4022:10346..110071622930231.9531193-CDS-H-paniculata_contig4022:10346..11007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4022 10347..11007 +
1691481201.917151-CDS-H-paniculata_contig4022:10346..110071691481201.917151-CDS-H-paniculata_contig4022:10346..11007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4022 10347..11007 +
1622930231.9688404-CDS-H-paniculata_contig4022:11722..120991622930231.9688404-CDS-H-paniculata_contig4022:11722..12099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4022 11723..12099 +
1691481201.930661-CDS-H-paniculata_contig4022:11722..120991691481201.930661-CDS-H-paniculata_contig4022:11722..12099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4022 11723..12099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4022.10420.1

>prot_H-paniculata_contig4022.10420.1 ID=prot_H-paniculata_contig4022.10420.1|Name=mRNA_H-paniculata_contig4022.10420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
MSPSVGGETVAGGVGGGDSRSDGVGHHLLIPSSSSSSSLPQQHQRPRQSL
MKSPPKRELLLLQQAHNIHLGYERVPRPSSHHRQKQQQHLRKTPEVSTYH
RGQQQQATPAKCLIVCPTGAEASIVVCLAALLTFFPFPPDRSNETARGNN
LEKCKRPQEMEMFGHDAVVDAATTAESGASSENSHVLMGGGDPPATSEDD
KRCPRSCSYGSSRDSTTGWQGCGATHPSIAGQSQQPTQQDTGEERGTSDD
DKQETQTEDTVSAEQEGRRREGRFEVLARGLTVTKADVRWRFLLLQEECP
WARPPRRLMQQLNEYFMTPGEQSWATLRDALLVLAAPDSANDGFP*
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mRNA from alignment at H-paniculata_contig4022:10160..12126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4022.10420.1 ID=mRNA_H-paniculata_contig4022.10420.1|Name=mRNA_H-paniculata_contig4022.10420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1967bp|location=Sequence derived from alignment at H-paniculata_contig4022:10160..12126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATTACGTCGAATCGGGAACAAATATTGTCATCCCCTGCGTGTCGTG
ACGATGACGAAATCGCCGCCGCCTGCGCTGGAGGTTGCGAAAAACTCACA
GGAGATGAACAACAACAACGACCACAACAACAAAACGTCCTGGCGGTGCT
TGCGACGGAAAGTCGTTGCAGTGGCGAAGCGGAGGCAATGTCACCGTCGG
TGGGCGGGGAGACGGTTGCCGGTGGCGTCGGAGGAGGAGACAGTCGCTCG
GATGGTGTGGGGCACCATCTCCTTATACCATCGTCGTCATCTTCGTCGTC
GTTGCCCCAGCAACACCAGCGTCCGCGACAGTCCTTGATGAAGTCACCGC
CGAAACGAGAGCTACTGTTACTACAACAGGCCCACAATATACACTTGGGT
TATGAGCGAGTGCCTCGACCATCCAGCCATCATCGACAGAAGCAGCAACA
GCACCTCCGGAAGACTCCTGAGGTCTCCACATACCACAGGGGTCAGCAGC
AGCAGGCGACTCCGGCGAAGTGCCTTATCGTGTGTCCGACGGGAGCAGAG
GCGTCCATCGTTGTGTGCCTTGCCGCGCTGTTGACCTTTTTCCCGTTTCC
ACCCGATCGAAGCAACGAGACGGCACGTGGCAACAACCTCGAAAAGTGTA
AACGGCCCCAAGAGATGGAGATGTTTGGTCATGATGCCGTAGTAGATGCC
GCAACCACGGCGGAGTCGGGTGCTTCTAGCGAGAATAGCCATGTGTTAAT
GGGGGGGGGCGATCCACCTGCGACATCCGAAGACGACAAACGGTGTCCGA
GATCTTGTTCCTATGGCTCCTCGCGGGATTCAACGACAGGGTGGCAAGGC
ATGTACTTCGTCCAGTCGAGAACTCCTTCAAAATAGAATTCAGAGTAAAT
TGAAAAGATCGTTTGCTGATAAAAAGAAAACGATTTTTTCCGTCTGGCTC
TCCAATGAGTAAATACGACGTCGGGGAAAATACTTCGACTATTGGTATCA
TTACAAATCCATTACAAATCCCTTAGAAGTGCTTGGGTACAAATGTTCGC
TTTTGGGGGTTTTGCTAACTCATGAATACGCTTTTTTTTCCGTCGTTTCA
CGTCGCCGTAAAAGCCATCGAAACATTTACAAACGGGAAGGTGGTTGCGC
GTATGCATACGTAAGTAGAAAGTATGCAAAATTGTCGCGTAAATCTTGGC
TCTTTTGACACTAAATGCCCTCTACATTAAAATCCGAAATATCAACCATT
TCCAACCGTTTTGACCAATTTTCTGTTAGAGGAAAATCTGCCGTATCCAA
ACCAAAAATAACAGTATGTTGACGCGGGTTCGTTTTGTCTCATTTTTTCG
AACTGAATTTCTTTTCAGGAGGGAATAGATATGTATGTATAAGCCGAAGA
CGTTGCCCTTGAACTGTATACTATTTGTTTCCAACAAATCTCAACATTTG
CTATTTCAATCAGACATAACGGTCCACACTAATGAGATAGAGAGAGCATG
TACAGGCAGTCAGATTCTAAGATATTTTCTAGTTCAATGCCTATACTGCC
CTTGCCTCGGCAGGTTGCGGCGCCACCCATCCATCTATCGCAGGGCAAAG
TCAACAGCCGACACAACAAGACACTGGGGAGGAAAGAGGGACAAGCGACG
ATGATAAACAAGAAACGCAGACGGAGGACACGGTATCCGCAGAGCAAGAA
GGGCGACGAAGAGAAGGACGGTTTGAGGTGCTGGCGCGAGGTTTGACAGT
CACGAAGGCCGATGTACGCTGGCGATTTTTGTTGCTGCAAGAGGAGTGCC
CGTGGGCTAGACCCCCCCGTCGGCTGATGCAACAGCTGAACGAATATTTT
ATGACGCCCGGGGAGCAGTCTTGGGCCACCTTGCGGGATGCGCTGTTGGT
GCTTGCTGCACCCGACAGCGCGAACGATGGATTTCCATAGTGTATGATAT
TTGTGGCACCGAAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4022:10160..12126+

>mRNA_H-paniculata_contig4022.10420.1 ID=mRNA_H-paniculata_contig4022.10420.1|Name=mRNA_H-paniculata_contig4022.10420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig4022:10160..12126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCGTCGGTGGGCGGGGAGACGGTTGCCGGTGGCGTCGGAGGAGG
AGACAGTCGCTCGGATGGTGTGGGGCACCATCTCCTTATACCATCGTCGT
CATCTTCGTCGTCGTTGCCCCAGCAACACCAGCGTCCGCGACAGTCCTTG
ATGAAGTCACCGCCGAAACGAGAGCTACTGTTACTACAACAGGCCCACAA
TATACACTTGGGTTATGAGCGAGTGCCTCGACCATCCAGCCATCATCGAC
AGAAGCAGCAACAGCACCTCCGGAAGACTCCTGAGGTCTCCACATACCAC
AGGGGTCAGCAGCAGCAGGCGACTCCGGCGAAGTGCCTTATCGTGTGTCC
GACGGGAGCAGAGGCGTCCATCGTTGTGTGCCTTGCCGCGCTGTTGACCT
TTTTCCCGTTTCCACCCGATCGAAGCAACGAGACGGCACGTGGCAACAAC
CTCGAAAAGTGTAAACGGCCCCAAGAGATGGAGATGTTTGGTCATGATGC
CGTAGTAGATGCCGCAACCACGGCGGAGTCGGGTGCTTCTAGCGAGAATA
GCCATGTGTTAATGGGGGGGGGCGATCCACCTGCGACATCCGAAGACGAC
AAACGGTGTCCGAGATCTTGTTCCTATGGCTCCTCGCGGGATTCAACGAC
AGGGTGGCAAGATGTCACCGTCGGTGGGCGGGGAGACGGTTGCCGGTGGC
GTCGGAGGAGGAGACAGTCGCTCGGATGGTGTGGGGCACCATCTCCTTAT
ACCATCGTCGTCATCTTCGTCGTCGTTGCCCCAGCAACACCAGCGTCCGC
GACAGTCCTTGATGAAGTCACCGCCGAAACGAGAGCTACTGTTACTACAA
CAGGCCCACAATATACACTTGGGTTATGAGCGAGTGCCTCGACCATCCAG
CCATCATCGACAGAAGCAGCAACAGCACCTCCGGAAGACTCCTGAGGTCT
CCACATACCACAGGGGTCAGCAGCAGCAGGCGACTCCGGCGAAGTGCCTT
ATCGTGTGTCCGACGGGAGCAGAGGCGTCCATCGTTGTGTGCCTTGCCGC
GCTGTTGACCTTTTTCCCGTTTCCACCCGATCGAAGCAACGAGACGGCAC
GTGGCAACAACCTCGAAAAGTGTAAACGGCCCCAAGAGATGGAGATGTTT
GGTCATGATGCCGTAGTAGATGCCGCAACCACGGCGGAGTCGGGTGCTTC
TAGCGAGAATAGCCATGTGTTAATGGGGGGGGGCGATCCACCTGCGACAT
CCGAAGACGACAAACGGTGTCCGAGATCTTGTTCCTATGGCTCCTCGCGG
GATTCAACGACAGGGTGGCAAGGTTGCGGCGCCACCCATCCATCTATCGC
AGGGCAAAGTCAACAGCCGACACAACAAGACACTGGGGAGGAAAGAGGGA
CAAGCGACGATGATAAACAAGAAACGCAGACGGAGGACACGGTATCCGCA
GAGCAAGAAGGGCGACGAAGAGAAGGACGGTTTGAGGTGCTGGCGCGAGG
TTTGACAGTCACGAAGGCCGATGTACGCTGGCGATTTTTGTTGCTGCAAG
AGGAGTGCCCGTGGGCTAGACCCCCCCGTCGGCTGATGCAACAGCTGAAC
GAATATTTTATGACGCCCGGGGAGCAGTCTTGGGCCACCTTGCGGGATGC
GCTGTTGGTGCTTGCTGCACCCGACAGCGCGAACGATGGATTTCCATAGG
TTGCGGCGCCACCCATCCATCTATCGCAGGGCAAAGTCAACAGCCGACAC
AACAAGACACTGGGGAGGAAAGAGGGACAAGCGACGATGATAAACAAGAA
ACGCAGACGGAGGACACGGTATCCGCAGAGCAAGAAGGGCGACGAAGAGA
AGGACGGTTTGAGGTGCTGGCGCGAGGTTTGACAGTCACGAAGGCCGATG
TACGCTGGCGATTTTTGTTGCTGCAAGAGGAGTGCCCGTGGGCTAGACCC
CCCCGTCGGCTGATGCAACAGCTGAACGAATATTTTATGACGCCCGGGGA
GCAGTCTTGGGCCACCTTGCGGGATGCGCTGTTGGTGCTTGCTGCACCCG
ACAGCGCGAACGATGGATTTCCATAG
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