mRNA_H-paniculata_contig40150.10404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 230 bits (587), Expect = 8.830e-66 Identity = 124/341 (36.36%), Postives = 198/341 (58.06%), Query Frame = 1
Query: 58 VFCFTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQ-INSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKI 1062
+F + T SDPCVY S D +L ++VDDIL+TG +++ + +LM+ F +TD+GE+ + G+EV + + GTL +SQ Y IL R+ + ANP TPG + S ++ + +QAI GSL++L CTR+D+ ++V Q R + P Q H+ AAK +LRYLRG PD+P Y + K + F+++ + RSTTG + F G + + ++ Q + A +T EAEL AL+ A+E +Y+ ++ + S I SD+ G L +A+N+ +SSR+KH+A+RF +R+ T+ ++ + H S+ LADI TK + FA + I
Sbjct: 389 IFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 214 bits (545), Expect = 3.970e-62 Identity = 124/340 (36.47%), Postives = 187/340 (55.00%), Query Frame = 1
Query: 67 FTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQINSCQ--IRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKIS 1065
F SDPCVY N I L L+VDD+L+ G + V+ +L +F +TDLGE SL+ G+E+ +++ TL +SQ Y SIL+RF +S + PT TPG ++ S +++D T+ YQ IVGSL+++ R+DI ++ Q AR M+ P++ H+VAAK LRYL G D TY + ++ FS++ + +ST+ + AN + F S LQ +TA ST EAEL A A KE ++ + +L Q + DN LH N ++SSR+KH+A+RF IR+ ++ + + + D LADI TK + F L I+
Sbjct: 94 FVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLIN 433
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 215 bits (548), Expect = 8.890e-59 Identity = 125/340 (36.76%), Postives = 187/340 (55.00%), Query Frame = 1
Query: 67 FTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQINSCQ--IRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKIS 1065
F SDPCVY N I L L+VDD+L+ G + V+ +L +F +TDLGE SL+ G+E+ +++ TL +SQ Y SIL+RF IS + PT TPG ++ S +++D T+ YQ IVGSL+++ R+DI ++ Q AR M+ P++ H+VAAK LRYL G D TY + ++ FS++ + +ST+ + AN + F S LQ +TA ST EAEL A A E ++ + +L Q + DN LH N ++SSR+KH+A+RF IR+ ++ + +V + D LADI TK + F L I+
Sbjct: 1323 FVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 1662
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 212 bits (540), Expect = 5.420e-58 Identity = 124/340 (36.47%), Postives = 186/340 (54.71%), Query Frame = 1
Query: 67 FTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQINSCQ--IRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKIS 1065
F SDPCVY N I L L+VDD+L+ G + V+ +L +F +TDLGE SL+ +E+ +++ TL +SQ Y SIL+RF +S + PT TPG ++ S +++D T+ YQ IVGSL+++ R+DI ++ Q AR M+ P++ H+VAAK LRYL G D TY + ++ FS++ + +ST+ + AN + F S LQ +TA ST EAEL A A KE ++ + +L Q + DN LH N ++SSR+KH+A+RF IR+ ++ + +V + D LADI TK F L I+
Sbjct: 654 FVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLIN 993
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 210 bits (534), Expect = 6.380e-57 Identity = 112/306 (36.60%), Postives = 180/306 (58.82%), Query Frame = 1
Query: 58 VFCFTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQ-INSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTR 957
+F + T SDPCVY S D +L ++VDDIL+TG +++ + +LM+ F +TD+GE+ + G+EV + + GTL +SQ Y IL R+ + ANP TPG + S ++ + +QAI GSL++L CTR+D+ ++V Q R + P Q H+ AAK +LRYLRG PD+P Y + + + F+++ + RSTTG + F G + + ++ Q + A +T EAEL AL+ A+E +Y+ ++ + S I SD+ G L +A+N+ +SSR+KH+A+RF +R+ R
Sbjct: 1168 IFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRNSRR 1473
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 206 bits (523), Expect = 9.060e-57 Identity = 116/304 (38.16%), Postives = 179/304 (58.88%), Query Frame = 1
Query: 160 TGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALY-------RTRSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQINSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARL 1050
TG T ++ D++ QL +KF +TD G L+ G+E+ ++ G + +SQHKYV++ILD++ + P TPG + + + K YQ IVGSL+FLT+ TR++I ++V+ R M+ PT QH+V AKR+LRYLRG PD+P + R + ++ + +A + + RS+TG + A G V +S LQK+TA S+ AE+ A+A A+E IYL G+ +L + I SD+ G + A NS + RSK ++ R+ +R +++ V S +QLADILTK ERV F +L
Sbjct: 394 TGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKL 695
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.070e-55 Identity = 103/292 (35.27%), Postives = 167/292 (57.19%), Query Frame = 1
Query: 205 MNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQ-INSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKI 1062
M+ F +TD+GE+ + G+EV + + GTL +SQ Y IL R+ + ANP TPG + S ++ + +Q I GSL++L CTR+D+ ++V Q R + P Q H+ AAK +LRYLRG PD+P Y + + + F+++ + RSTTG + F G + + ++ Q + A +T EAEL AL+ A+E +Y+ ++ + S I SD+ G L +A+N+ +SSR+KH+A+RF +R+ T+ ++ + H S+ LADI TK + FA + I
Sbjct: 1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 201 bits (510), Expect = 3.610e-55 Identity = 122/353 (34.56%), Postives = 186/353 (52.69%), Query Frame = 1
Query: 67 FTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRN-------------QLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALYRT-----RSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQINSCQ--IRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKIS 1065
F SDPCVY N I L L+VDD+L+ G + + + +L +F +TDLGE S G+++ +++ TL +SQ Y SIL+RF +S + PT TPG ++ S +++D T+ YQ IVGSL+++ R+DI ++ Q AR M+ P++ H+VAAK LRYL G D TY + ++ FS++ + +ST+ + AN + F S LQ +TA ST EAEL A A KE ++ + +L Q + DN LH N ++SSR+KH+A+RF IR+ ++ + +V + D LADI TK + F L I+
Sbjct: 302 FVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 202 bits (515), Expect = 6.120e-55 Identity = 120/341 (35.19%), Postives = 186/341 (54.55%), Query Frame = 1
Query: 58 VFCFTPTISDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSANPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYSRSKLEVVDFSNALY-----RTRSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDLQ-INSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTKQCERVTFARLCSKI 1062
V F PT SDPCVY GS DT ++L L+V+DIL++G L+ D++ +L ++F +TD+GE+ LI G++V + + GTL +SQ YV SIL+ + + NP + ++ AA +K YQ+I GSL++L C R+D ++V Q R S P + H AAK LRY+RG PD+ + R + V F+++ + +STTG+ E+EL A++ AKE YL + L + + I SD+ G L LAAN+ +SSR+KH+A+RF +++ + + + V HV + LADI TK +R F + +I
Sbjct: 550 VIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQ----------------------VESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQI 854
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.200e-50 Identity = 112/325 (34.46%), Postives = 186/325 (57.23%), Query Frame = 1
Query: 82 SDPCVYSKGSNDTSIMLNLFVDDILVTGPTDKLLMDVRNQLMNKFTVTDLGEISLIRGLEVLHNKQTGTL*LSQHKYVLSILDRFNISSA----NPTQTPGIKTDQSATSNSGSVMDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKRILRYLRGYPDIPTTYS----RSKLEV---VDFSNALYRTRSTTGMMPFFANGSVYFSSRLQKITATSTTEAELTALAACAKEGIYLLGICRQLDL-QINSCQIRSDNIGILHLAANSNYSSRSKHLAIRFAEIRDWTRSKQLIVDHVSSSDQLADILTK 1020
+D CVY K S D + + L+VDD+++ T + + +V+ L + F + +LGE I G+E+ H++ TGTL + Q +YV +++RFN A NP +T G+K ++ + + + + K Y++++GSL+++T CTR D+ + V Q ++F+ P QQH AA R+LRYL+ D YS ++ LEV D+ + L RS +G+M F S+ Q+ A S+ EAE AL+ C +E ++ + L Q+ + Q+ DN G + LA+N+ Y++R+K + IR I + + VD+V + DQLAD+LTK
Sbjct: 86 ADKCVYVKVSKDNYVYVCLYVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCET-GMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAVLEVYTDADWGSNLDGRRSVSGIMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKRVDIRHHYIGENVARDIITVDYVGTEDQLADLLTK 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40150.10404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40150.10404.1 >prot_H-paniculata_contig40150.10404.1 ID=prot_H-paniculata_contig40150.10404.1|Name=mRNA_H-paniculata_contig40150.10404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MDAAATKDYQAIVGSLIFLTHCTRFDICFSVIQAARFMSAPTQQHLVAAKback to top mRNA from alignment at H-paniculata_contig40150:275..1486+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40150.10404.1 ID=mRNA_H-paniculata_contig40150.10404.1|Name=mRNA_H-paniculata_contig40150.10404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig40150:275..1486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40150:275..1486+ >mRNA_H-paniculata_contig40150.10404.1 ID=mRNA_H-paniculata_contig40150.10404.1|Name=mRNA_H-paniculata_contig40150.10404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig40150:275..1486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |