mRNA_H-paniculata_contig40036.10384.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40036.10384.1
Unique NamemRNA_H-paniculata_contig40036.10384.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A1L2F1W9_9PHAE (Photosystem II reaction center protein K n=3 Tax=Fucales TaxID=3009 RepID=A0A1L2F1W9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-18
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ME +LLTKLPELYA+YSPIVDILPI+PVLFLLLAFLWQASVGFR
Sbjct:    1 MESVLLTKLPELYAIYSPIVDILPIIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A7S6U9V7_9STRA (Photosystem II reaction center protein K n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-15
Identity = 34/44 (77.27%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            MEIIL++KLP+ Y ++SPI+DILPIVPVLFLLLAF+WQA+VGFR
Sbjct:    1 MEIILISKLPDAYTIFSPIIDILPIVPVLFLLLAFVWQAAVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A8F0F735_9PHAE (Photosystem II reaction center protein K n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F735_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-15
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            M I+ L KLPELY ++SP+VDILP+VPVLFLLLAFLWQASVGFR
Sbjct:    1 MVILFLNKLPELYLIFSPVVDILPVVPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A2I4Q318_9PHAE (Photosystem II reaction center protein K n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q318_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.750e-15
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            M ++ L KLPELY ++SP+VDILP++PVLFLLLAFLWQASVGFR
Sbjct:    1 MVVVFLNKLPELYVIFSPLVDILPVIPVLFLLLAFLWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: B7T221_VAULI (Photosystem II reaction center protein K n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T221_VAULI)

HSP 1 Score: 70.5 bits (171), Expect = 2.750e-15
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ME ILLTKLPE YA++SPI+DILPI+P+ FLLLAF+WQA+VGFR
Sbjct:    1 MEGILLTKLPEAYAIFSPIIDILPIIPIFFLLLAFVWQAAVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: B2XT42_HETAK (Photosystem II reaction center protein K n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT42_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-14
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ME ILL KLPE Y ++SPIVD+LP++PVLFLLLAF+WQASVGF+
Sbjct:    1 MEGILLAKLPEAYTIFSPIVDVLPVIPVLFLLLAFVWQASVGFK 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A8E5XRF5_9PHAE (Photosystem II reaction center protein K n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ME ILL KLP  YA++SPI+DILPI+PV FLLLAF+WQASVGFR
Sbjct:    1 MESILLAKLPTAYAIFSPIIDILPIIPVFFLLLAFVWQASVGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: A0A1C9CCI5_9RHOD (Photosystem II reaction center protein K n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCI5_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 4.680e-14
Identity = 31/42 (73.81%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    7 IILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            +ILLTKLPE YA++ P++DILPI+PVLFLL+AF+WQA+VGFR
Sbjct:    4 LILLTKLPEAYAIFRPLIDILPIIPVLFLLMAFVWQAAVGFR 45
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: PSBK_PHATC (Photosystem II reaction center protein K n=46 Tax=Sar TaxID=2698737 RepID=PSBK_PHATC)

HSP 1 Score: 66.6 bits (161), Expect = 9.260e-14
Identity = 30/44 (68.18%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ME +LL++LPE Y ++SPIVD+LPI+PV FLLLAF+WQA++GFR
Sbjct:    1 METLLLSRLPEAYVVFSPIVDVLPIIPVFFLLLAFVWQAAIGFR 44
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BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Match: K9ZXR9_9STRA (Photosystem II reaction center protein K n=8 Tax=Monodopsidaceae TaxID=425072 RepID=K9ZXR9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.260e-14
Identity = 31/41 (75.61%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   10 ILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR 132
            ILL KLP+++A++SPIVDILP++PVLFLLLAF+WQA+VGFR
Sbjct:    4 ILLAKLPDVFAVFSPIVDILPVIPVLFLLLAFVWQAAVGFR 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40036.10384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1W9_9PHAE1.200e-1890.91Photosystem II reaction center protein K n=3 Tax=F... [more]
A0A7S6U9V7_9STRA1.940e-1577.27Photosystem II reaction center protein K n=1 Tax=S... [more]
A0A8F0F735_9PHAE1.940e-1579.55Photosystem II reaction center protein K n=1 Tax=P... [more]
A0A2I4Q318_9PHAE2.750e-1575.00Photosystem II reaction center protein K n=1 Tax=D... [more]
B7T221_VAULI2.750e-1577.27Photosystem II reaction center protein K n=1 Tax=V... [more]
B2XT42_HETAK1.600e-1475.00Photosystem II reaction center protein K n=2 Tax=H... [more]
A0A8E5XRF5_9PHAE1.600e-1477.27Photosystem II reaction center protein K n=1 Tax=I... [more]
A0A1C9CCI5_9RHOD4.680e-1473.81Photosystem II reaction center protein K n=1 Tax=B... [more]
PSBK_PHATC9.260e-1468.18Photosystem II reaction center protein K n=46 Tax=... [more]
K9ZXR9_9STRA9.260e-1475.61Photosystem II reaction center protein K n=8 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40036contigH-paniculata_contig40036:584..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue9.7e-09
Seed eggNOG ortholog313612.L8106_17160
Preferred namepsbK
KEGG koko:K02712
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0009521,GO:0009523,GO:0009579,GO:0016020,GO:0030075,GO:0030096,GO:0032991,GO:0034357,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044436,GO:0044444,GO:0044459,GO:0044464,GO:0071944,GO:0098796,GO:0098797
EggNOG free text desc.One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation
EggNOG OGs1G9DE@1117,1HD3P@1150,2E3TA@1,32YQR@2
COG Functional cat.S
BiGG ReactioniJN678.psbK
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.0787024-CDS-H-paniculata_contig40036:583..7181622930227.0787024-CDS-H-paniculata_contig40036:583..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40036 584..718 -
1691481199.6959488-CDS-H-paniculata_contig40036:583..7181691481199.6959488-CDS-H-paniculata_contig40036:583..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40036 584..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40036.10384.1prot_H-paniculata_contig40036.10384.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40036 584..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40036.10384.1

>prot_H-paniculata_contig40036.10384.1 ID=prot_H-paniculata_contig40036.10384.1|Name=mRNA_H-paniculata_contig40036.10384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQASVGFR*
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mRNA from alignment at H-paniculata_contig40036:584..718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40036.10384.1 ID=mRNA_H-paniculata_contig40036.10384.1|Name=mRNA_H-paniculata_contig40036.10384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig40036:584..718- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATCATATTACTAACAAAGTTACCAGAGTTATACGCAATGTATAG
TCCAATTGTAGATATTTTACCAATTGTACCAGTTCTTTTTTTATTACTTG
CCTTTCTTTGGCAAGCTTCAGTTGGTTTTAGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40036:584..718-

>mRNA_H-paniculata_contig40036.10384.1 ID=mRNA_H-paniculata_contig40036.10384.1|Name=mRNA_H-paniculata_contig40036.10384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig40036:584..718- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATCATATTACTAACAAAGTTACCAGAGTTATACGCAATGTATAG
TCCAATTGTAGATATTTTACCAATTGTACCAGTTCTTTTTTTATTACTTG
CCTTTCTTTGGCAAGCTTCAGTTGGTTTTAGATAAATGGAAATCATATTA
CTAACAAAGTTACCAGAGTTATACGCAATGTATAGTCCAATTGTAGATAT
TTTACCAATTGTACCAGTTCTTTTTTTATTACTTGCCTTTCTTTGGCAAG
CTTCAGTTGGTTTTAGATAA
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