mRNA_H-paniculata_contig40031.10382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40031.10382.1
Unique NamemRNA_H-paniculata_contig40031.10382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40031.10382.1 vs. uniprot
Match: D8LNL3_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 8.920e-96
Identity = 168/378 (44.44%), Postives = 240/378 (63.49%), Query Frame = 1 
Query:   13 WDIFVLAVTVAACCVIARAKVYSLTDDNFDSFMDQVPDDGLLLDDFHTPLCRACQRLAAVIDYLDLEWGQQEADPANQWFLVAKVDCSRNERLATVFGIEHFPGLRFVRAGQWSTYEGKRSIEGIQEFKKRMAIVELPALNKEKLHELVKSEQVVFVLATETDADPTSEAPGVALAATGLRQSLTLGTMNGEVLASLGMPARS-TPALIKVIAGPDGLLSLPFDGK----------------LRSASYLAITRWVERENHPLLAEFGPDNFSRLGLTGKLLVIGVVDPSKKETAGVEQTLRRVASRMGLELSDKMVFGIMDGIMLKGFAETLNVFDGLPRLAVLDMARDSFFSTPEDMTLEPVDIEAFLFSVLSGDVP 1095
            W + +LAV +A  C IA   V++L D++FD F+  +P+  LLL DF+ P CR CQRL  V+DYL+ EW ++E D + +WF +AKVD  +N RL TVFGI   P LRFVRAG+W TY+G R IE I+EFK+RMA+V L  ++ + L  L +S + VFVL+   DADP++ APGV LAAT  +   T  T + EVLASLG+     +PAL+KV+AG  G L  P   K                + +AS  ++  WVERE   L+++  PDNF RLG  G+L+V+GV DP  + T    +    VAS MG+  S++++FG ++ + + GF ET NV++G P++ V+D+A D F+ T E+M +E  ++EAFL  VL+G +P
Sbjct:   11 WALRLLAV-IAVVCTIALGGVHNLGDNDFDDFVADLPEQALLLVDFYKPGCRHCQRLNPVLDYLEAEWEKEEPDDSKRWFKLAKVDIEKNPRLKTVFGIAKLPDLRFVRAGRWGTYQGGRLIEDIKEFKERMALVPLRFVDADALTGLARSSEAVFVLSANEDADPSTVAPGVLLAATLSQHEATFCTTSPEVLASLGLGVSGVSPALVKVVAGQGGRLLQPAAYKTERGTQGVNDDSATVSVAAASSWSVLSWVERERFGLVSDLSPDNFMRLGSLGRLMVLGVFDPKHEATRSFRKVFGDVASDMGVRHSERLMFGTVNRVTMPGFMETFNVYEGHPQVIVMDIASDEFY-TLENMRMEVGEMEAFLIDVLAGFIP 386
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BLAST of mRNA_H-paniculata_contig40031.10382.1 vs. uniprot
Match: A0A4P9X089_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X089_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 1.390e-12
Identity = 84/321 (26.17%), Postives = 138/321 (42.99%), Query Frame = 1 
Query:  148 FHTPLCRACQRLAAVIDYLDLEWGQQEADPANQWFLVAKVDCSRNERLATVFGIEHFPGLRFVR--AGQWSTYEGKRSIEGIQEFKKRMAIVELPALNKEKLHELVKSEQVVFVLATETDADPTSEAPGV--ALAATGLRQSLTLGTMNGEVLASLGMPARSTPALIKVIAGPDG----LLSLPFDGKLRSASYLAITRWVERENHPLLAEFGPDNFSRLGLTGKLLVIGVVDPSKKETAGVEQTLRRVAS--------------RMGLELSDKMVFGIMDGIMLKGFAETLNVFDG--LPRLAVLDMARDSFFSTPEDMT 1038
            FH   C  CQ LA V + L  E  QQ          V K++C+ N      + I  +P L+++   AG  + Y G RS+  + ++ K+   V   A++  +L +L + E+VVFV     +  P +EA  +  AL AT +R    +  +   V    G   R   A+   +A  D     L+     G+ R    +A+  WV++  HPL+ E    N + +    +L+V+G+ +  K E+A + + LR  A               R G      ++F  +DG     +   +  F    LPRL V D   D+++    D T
Sbjct:  169 FHASWCGHCQHLAPVWERLGPELLQQVN--------VGKIECTVNPNACNNYAIRGYPTLKYINQAAGLETEYNGDRSVRSMTQWAKQQHRVPFEAVDAARLQQLQQKEEVVFVFLV--NGAPAAEAETMLGALLATTIRYHSHVTVV---VCPDAGARERVMKAMPAPLASQDPHAPRLVVSREHGRDRG-DQIALNEWVQQHRHPLVVELHSGNSNEILGGDRLVVLGIFNMMKPESATMVKRLREHAQAWNARQQAVDTDTHRAGTPSLRPVMFTTIDGANWSNYISRVYGFQTHELPRLLVGDPHADAYWDVDADGT 475
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BLAST of mRNA_H-paniculata_contig40031.10382.1 vs. uniprot
Match: A0A6V7M8C1_9HYME (Thioredoxin domain-containing protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M8C1_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 3.200e-5
Identity = 74/329 (22.49%), Postives = 129/329 (39.21%), Query Frame = 1 
Query:  151 HTPLCRACQRLAAVIDYLDLEWGQQEADPANQWFLVAKVDCSRNERLATVFGIEHFPGLRFVRAGQWSTYEGKRSIEGIQEFKKRMAIVELPALNKEKLHELVKSEQVVFVLATETDADP-------TSEAPGVALAATGLRQSLTLGTMNGEVLASLGMPARSTPALIKVIAGPDGLLSLPFDGKLRSASYLAITRWVERENHPLLAEFGPDNFSRLGLTGKLLVIGVVDPSKKETAGVEQT-----LRRVASRMGLELSDKMVFG-IMDGIMLKGFAETLNVFDGLPRLAVLDMARDSFFSTPEDMT-LEPVDIEAFLFSVLSGDVP 1095
            + P C  C+RL  V       W     +       V +VDC+R   +A  F I+ FP + F++  Q  TY G R+ E I +F  R++   +  + + +  E +K+++ ++ L       P       T+EA           Q       +  V+     P +  PA++ V         +P D    ++    +  WV +E      +    N ++L LTGK LV+ VV+ +  E    +       +  V  +   +  D   FG I +  ++ G A    +    P L V++          +D + L P  IE FL  + +   P
Sbjct:    2 YAPWCTHCKRLEPV-------WSHVAQNLYASSIRVGRVDCTRFTSVAQHFKIKGFPTILFLKGEQKFTYNGDRTREEIVKFALRLSGPPVQEITRTESFETLKADRELYFLYVGERVGPLWDIYHKTAEA----------FQPHAFFYQSHPVVVDKNAPIKRIPAIV-VYKENTHYTFIPKDHMDLASLNETMYNWVNKERFQTFPKVTWGNINQLFLTGKNLVLAVVEENAVEDVAPDMLEFRDMVESVIKKKRAKYHDDFQFGWIANPELVNGIAM---MEMSTPSLIVINXXXXXXXXPDDDPSKLTPHAIEMFLEHIKNETAP 309
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BLAST of mRNA_H-paniculata_contig40031.10382.1 vs. uniprot
Match: UPI0006C9B959 (protein disulfide-isomerase TMX3 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9B959)

HSP 1 Score: 56.6 bits (135), Expect = 3.520e-5
Identity = 84/357 (23.53%), Postives = 134/357 (37.54%), Query Frame = 1 
Query:   46 ACCVIARAKVYSLTDDNFDSFMDQVPDDGLLLDDFHTPLCRACQRLAAVIDYLDLEWGQQEADPANQWFLVAKVDCSRNERLATVFGIEHFPGLRFVRAGQWSTYEGKRSIEGIQEFKKRMAIVELPALNKEKLHELVKSE-QVVFVLATETDADPTSEAPGVALAATGLRQSLTLGTMNGEVLASLGMPARSTPALIKVIAGPDGLLSLPFDGKLRSASYLAITRWVERENHPLLAEFGPDNFSRLGLTGKLLVIGVVDPSKKETAGVEQT-----LRRVASRMGLELSDKMVFGIMDGIMLKGFAETLNVFDGLPRLAVLDMARDS-FFSTPEDMTLEPVDIEAFLFSVLSGDVP 1095
            AC VI  +   S   +  D  +D +  +G  L   + P C  C+RL  V       W        +    V ++DC+R + +A  F I+ FP + F +  Q   Y G R+ + I +F  R++   +  + +    + +K + +V F+   E           VA     + Q       +  V+     P   TP L           S   D   R      I +WV  E  P   +    N  +L LTGK LV+ VV+ +  E    +       +  V  R   +  D   FG +    L      + V   LP L V++   +  +F   E   L P  IE FL  + + + P
Sbjct:   12 ACTVIVSSTEASRVLELSDKLLD-IHKEGPWLIMMYAPWCAHCKRLEPV-------WAHVAQYLHSTSIRVGRIDCTRFKNVAHTFQIKGFPTIMFFKGDQQFVYNGDRTRDEIVKFALRLSGPVVQEVTRTTSFDTLKKDREVYFLYVGERSGMIWDIYHNVA----SIFQPHAFFYQSHPVVVDKHAPIVKTPTLFVYKENSHYNFS-GHDITDRKKLNETIYKWVNAERFPTFPKVTQGNIYQLYLTGKNLVLAVVEENPLEEVSPDMLEFKDMVESVIKRKRQKYHDHFQFGWVANPELVNRIAMMVV--PLPSLIVINTTTNHHYFPEDEPEKLTPHAIELFLEHIRNENAP 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40031.10382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNL3_ECTSI8.920e-9644.44Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A4P9X089_9FUNG1.390e-1226.17Uncharacterized protein n=1 Tax=Caulochytrium prot... [more]
A0A6V7M8C1_9HYME3.200e-522.49Thioredoxin domain-containing protein n=1 Tax=Brac... [more]
UPI0006C9B9593.520e-523.53protein disulfide-isomerase TMX3 n=1 Tax=Trichogra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40031contigH-paniculata_contig40031:174..1277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.5
Seed ortholog evalue4.1e-81
Seed eggNOG ortholog2880.D8LNL3
Preferred nameTMX3
KEGG koko:K09585,ko:K13996
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0002576,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0008150,GO:0008152,GO:0009986,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031091,GO:0031092,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0033554,GO:0034976,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-cysteine oxidation
EggNOG OGsCOG0526@1,KOG4277@2759
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Exons1
Model size1104
Cds size1104
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.9700086-CDS-H-paniculata_contig40031:173..12771622930226.9700086-CDS-H-paniculata_contig40031:173..1277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40031 174..1277 -
1691481199.6620183-CDS-H-paniculata_contig40031:173..12771691481199.6620183-CDS-H-paniculata_contig40031:173..1277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40031 174..1277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40031.10382.1prot_H-paniculata_contig40031.10382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40031 174..1277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40031.10382.1

>prot_H-paniculata_contig40031.10382.1 ID=prot_H-paniculata_contig40031.10382.1|Name=mRNA_H-paniculata_contig40031.10382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp
MVKLWDIFVLAVTVAACCVIARAKVYSLTDDNFDSFMDQVPDDGLLLDDF
HTPLCRACQRLAAVIDYLDLEWGQQEADPANQWFLVAKVDCSRNERLATV
FGIEHFPGLRFVRAGQWSTYEGKRSIEGIQEFKKRMAIVELPALNKEKLH
ELVKSEQVVFVLATETDADPTSEAPGVALAATGLRQSLTLGTMNGEVLAS
LGMPARSTPALIKVIAGPDGLLSLPFDGKLRSASYLAITRWVERENHPLL
AEFGPDNFSRLGLTGKLLVIGVVDPSKKETAGVEQTLRRVASRMGLELSD
KMVFGIMDGIMLKGFAETLNVFDGLPRLAVLDMARDSFFSTPEDMTLEPV
DIEAFLFSVLSGDVPLTK
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mRNA from alignment at H-paniculata_contig40031:174..1277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40031.10382.1 ID=mRNA_H-paniculata_contig40031.10382.1|Name=mRNA_H-paniculata_contig40031.10382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig40031:174..1277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGTTGTGGGATATATTTGTACTAGCTGTTACAGTGGCTGCTTG
TTGTGTGATAGCTCGAGCAAAGGTGTACTCCCTGACCGATGACAACTTCG
ACAGCTTCATGGATCAGGTGCCAGACGATGGGCTTTTATTGGATGACTTC
CACACGCCGCTCTGTAGAGCGTGTCAGCGATTGGCCGCTGTGATTGACTA
CCTAGACCTTGAGTGGGGGCAGCAGGAGGCCGACCCCGCAAACCAGTGGT
TTCTGGTGGCGAAAGTCGACTGCAGTAGGAATGAACGTCTTGCAACGGTG
TTTGGGATTGAACATTTCCCGGGCTTGCGCTTCGTTCGAGCAGGGCAATG
GAGTACATACGAGGGAAAGAGATCGATAGAGGGCATTCAGGAATTCAAGA
AACGAATGGCGATTGTCGAGTTGCCTGCGCTCAATAAAGAGAAGCTGCAC
GAGCTCGTTAAATCGGAACAGGTTGTTTTCGTGCTCGCAACGGAGACAGA
CGCCGATCCCACGTCCGAGGCCCCAGGCGTTGCTCTGGCGGCGACCGGAC
TACGGCAGTCGTTGACCCTCGGCACGATGAATGGGGAGGTGTTAGCATCA
CTCGGAATGCCCGCCAGGAGCACGCCGGCGTTGATCAAGGTAATTGCCGG
ACCTGATGGATTGCTGTCGTTGCCATTTGATGGAAAATTGAGGAGCGCAT
CATATTTGGCGATAACGCGCTGGGTGGAAAGGGAAAACCACCCCCTGCTA
GCAGAGTTTGGGCCAGACAACTTTTCCCGGTTGGGTTTGACGGGAAAGCT
ACTGGTTATCGGGGTTGTTGATCCCAGCAAGAAGGAAACGGCAGGGGTTG
AGCAGACATTGCGAAGAGTAGCCTCGCGAATGGGGCTTGAACTATCCGAC
AAAATGGTTTTCGGAATCATGGATGGTATTATGCTAAAGGGCTTCGCGGA
AACTCTTAACGTGTTCGATGGGCTTCCTCGTCTTGCTGTACTGGATATGG
CTCGAGATTCTTTTTTTTCCACTCCTGAGGACATGACACTAGAGCCGGTG
GACATTGAGGCGTTCCTCTTCAGCGTTTTGTCAGGAGACGTTCCGCTGAC
TAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40031:174..1277-

>mRNA_H-paniculata_contig40031.10382.1 ID=mRNA_H-paniculata_contig40031.10382.1|Name=mRNA_H-paniculata_contig40031.10382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at H-paniculata_contig40031:174..1277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGTTGTGGGATATATTTGTACTAGCTGTTACAGTGGCTGCTTG
TTGTGTGATAGCTCGAGCAAAGGTGTACTCCCTGACCGATGACAACTTCG
ACAGCTTCATGGATCAGGTGCCAGACGATGGGCTTTTATTGGATGACTTC
CACACGCCGCTCTGTAGAGCGTGTCAGCGATTGGCCGCTGTGATTGACTA
CCTAGACCTTGAGTGGGGGCAGCAGGAGGCCGACCCCGCAAACCAGTGGT
TTCTGGTGGCGAAAGTCGACTGCAGTAGGAATGAACGTCTTGCAACGGTG
TTTGGGATTGAACATTTCCCGGGCTTGCGCTTCGTTCGAGCAGGGCAATG
GAGTACATACGAGGGAAAGAGATCGATAGAGGGCATTCAGGAATTCAAGA
AACGAATGGCGATTGTCGAGTTGCCTGCGCTCAATAAAGAGAAGCTGCAC
GAGCTCGTTAAATCGGAACAGGTTGTTTTCGTGCTCGCAACGGAGACAGA
CGCCGATCCCACGTCCGAGGCCCCAGGCGTTGCTCTGGCGGCGACCGGAC
TACGGCAGTCGTTGACCCTCGGCACGATGAATGGGGAGGTGTTAGCATCA
CTCGGAATGCCCGCCAGGAGCACGCCGGCGTTGATCAAGGTAATTGCCGG
ACCTGATGGATTGCTGTCGTTGCCATTTGATGGAAAATTGAGGAGCGCAT
CATATTTGGCGATAACGCGCTGGGTGGAAAGGGAAAACCACCCCCTGCTA
GCAGAGTTTGGGCCAGACAACTTTTCCCGGTTGGGTTTGACGGGAAAGCT
ACTGGTTATCGGGGTTGTTGATCCCAGCAAGAAGGAAACGGCAGGGGTTG
AGCAGACATTGCGAAGAGTAGCCTCGCGAATGGGGCTTGAACTATCCGAC
AAAATGGTTTTCGGAATCATGGATGGTATTATGCTAAAGGGCTTCGCGGA
AACTCTTAACGTGTTCGATGGGCTTCCTCGTCTTGCTGTACTGGATATGG
CTCGAGATTCTTTTTTTTCCACTCCTGAGGACATGACACTAGAGCCGGTG
GACATTGAGGCGTTCCTCTTCAGCGTTTTGTCAGGAGACGTTCCGCTGAC
TAAAATGGTGAAGTTGTGGGATATATTTGTACTAGCTGTTACAGTGGCTG
CTTGTTGTGTGATAGCTCGAGCAAAGGTGTACTCCCTGACCGATGACAAC
TTCGACAGCTTCATGGATCAGGTGCCAGACGATGGGCTTTTATTGGATGA
CTTCCACACGCCGCTCTGTAGAGCGTGTCAGCGATTGGCCGCTGTGATTG
ACTACCTAGACCTTGAGTGGGGGCAGCAGGAGGCCGACCCCGCAAACCAG
TGGTTTCTGGTGGCGAAAGTCGACTGCAGTAGGAATGAACGTCTTGCAAC
GGTGTTTGGGATTGAACATTTCCCGGGCTTGCGCTTCGTTCGAGCAGGGC
AATGGAGTACATACGAGGGAAAGAGATCGATAGAGGGCATTCAGGAATTC
AAGAAACGAATGGCGATTGTCGAGTTGCCTGCGCTCAATAAAGAGAAGCT
GCACGAGCTCGTTAAATCGGAACAGGTTGTTTTCGTGCTCGCAACGGAGA
CAGACGCCGATCCCACGTCCGAGGCCCCAGGCGTTGCTCTGGCGGCGACC
GGACTACGGCAGTCGTTGACCCTCGGCACGATGAATGGGGAGGTGTTAGC
ATCACTCGGAATGCCCGCCAGGAGCACGCCGGCGTTGATCAAGGTAATTG
CCGGACCTGATGGATTGCTGTCGTTGCCATTTGATGGAAAATTGAGGAGC
GCATCATATTTGGCGATAACGCGCTGGGTGGAAAGGGAAAACCACCCCCT
GCTAGCAGAGTTTGGGCCAGACAACTTTTCCCGGTTGGGTTTGACGGGAA
AGCTACTGGTTATCGGGGTTGTTGATCCCAGCAAGAAGGAAACGGCAGGG
GTTGAGCAGACATTGCGAAGAGTAGCCTCGCGAATGGGGCTTGAACTATC
CGACAAAATGGTTTTCGGAATCATGGATGGTATTATGCTAAAGGGCTTCG
CGGAAACTCTTAACGTGTTCGATGGGCTTCCTCGTCTTGCTGTACTGGAT
ATGGCTCGAGATTCTTTTTTTTCCACTCCTGAGGACATGACACTAGAGCC
GGTGGACATTGAGGCGTTCCTCTTCAGCGTTTTGTCAGGAGACGTTCCGC
TGACTAAA
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