mRNA_H-paniculata_contig4003.10380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4003.10380.1
Unique NamemRNA_H-paniculata_contig4003.10380.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4003.10380.1 vs. uniprot
Match: A0A6H5KXK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.290e-14
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  255 PPYQIQQLYREGRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAIWERKTKPSF 464
            P  Q    YREGR+ SC D W D K  I A +    ++A ++++ +SY+QRQGD NPS+AIWERK +PSF
Sbjct:   23 PVSQATHYYREGRYTSCSDCWKDFKTSIAAKMCNEEQDALELLKGLSYRQRQGDLNPSLAIWERKEEPSF 92          
BLAST of mRNA_H-paniculata_contig4003.10380.1 vs. uniprot
Match: A0A1E7FHM2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHM2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.420e-6
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 3
Query:  261 YQIQQLYREGRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAIWERKTKPSF 464
            YQI  LYR GRFDSC   W D+K  IK       ++A +++    +K+R      + AIWE K +P +
Sbjct:   69 YQIDHLYRLGRFDSCKKQWGDVKTAIKIKFTRDPKKAQELLDSTYFKKRTTISPTAGAIWELKERPGW 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4003.10380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXK4_9PHAE4.290e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7FHM2_9STRA6.420e-638.24Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4003contigH-paniculata_contig4003:7597..14213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1642
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4003.10380.1prot_H-paniculata_contig4003.10380.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4003 7734..13041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.8099306-UTR-H-paniculata_contig4003:7596..77331622930226.8099306-UTR-H-paniculata_contig4003:7596..7733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 7597..7733 +
1691481199.5626178-UTR-H-paniculata_contig4003:7596..77331691481199.5626178-UTR-H-paniculata_contig4003:7596..7733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 7597..7733 +
1622930226.8856406-UTR-H-paniculata_contig4003:13041..142131622930226.8856406-UTR-H-paniculata_contig4003:13041..14213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 13042..14213 +
1691481199.6316915-UTR-H-paniculata_contig4003:13041..142131691481199.6316915-UTR-H-paniculata_contig4003:13041..14213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 13042..14213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.8262644-CDS-H-paniculata_contig4003:7733..77411622930226.8262644-CDS-H-paniculata_contig4003:7733..7741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 7734..7741 +
1691481199.583512-CDS-H-paniculata_contig4003:7733..77411691481199.583512-CDS-H-paniculata_contig4003:7733..7741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 7734..7741 +
1622930226.8420856-CDS-H-paniculata_contig4003:8401..85081622930226.8420856-CDS-H-paniculata_contig4003:8401..8508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 8402..8508 +
1691481199.6014464-CDS-H-paniculata_contig4003:8401..85081691481199.6014464-CDS-H-paniculata_contig4003:8401..8508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 8402..8508 +
1622930226.8606946-CDS-H-paniculata_contig4003:11700..118221622930226.8606946-CDS-H-paniculata_contig4003:11700..11822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 11701..11822 +
1691481199.6122663-CDS-H-paniculata_contig4003:11700..118221691481199.6122663-CDS-H-paniculata_contig4003:11700..11822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 11701..11822 +
1622930226.8734162-CDS-H-paniculata_contig4003:12945..130411622930226.8734162-CDS-H-paniculata_contig4003:12945..13041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 12946..13041 +
1691481199.6217241-CDS-H-paniculata_contig4003:12945..130411691481199.6217241-CDS-H-paniculata_contig4003:12945..13041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 12946..13041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4003.10380.1

>prot_H-paniculata_contig4003.10380.1 ID=prot_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MHKKENEKASSNSLKERCCTSLSVCTQKVRGPDLRTSEDPPYQIQQLYRE
GRFDSCHDSWSDLKICIKANLAWTTEEAHQIMQQVSYKQRQGDKNPSMAI
WERKTKPSFY*
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mRNA from alignment at H-paniculata_contig4003:7597..14213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4003.10380.1 ID=mRNA_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6617bp|location=Sequence derived from alignment at H-paniculata_contig4003:7597..14213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGAATCGATACCCCCGTTCAAAAAGGACCTTAGAAGCGACAGTACGG TGCTTGCCTAGCGGTGCCGCATGCTATAATGACTTGGTCACGCAACCCGG AAGTGGATGTCTGGAAACATATCGACTTCGCCTTTGTATGCACAAGTGAG TTTGTGTATGTGGCTTTTGTTTAAGACGAACGGCGGTGCGGTTGTCGGTT CTCATCAAAACTCTGTTGTCAGTAGTGCAACACGGCGCCTTCTGCGCACG AAGCTCCCACCAGCAGGTTTTACGAAATCTCATTAGCCATGAGACCACGC TAGGGGTATTTTAACAATATGAAACGATCATCATGGAATTTATCTGGGGA TGTCGGGATGACACCAACATCTGCAGCGTTGTTGCATACTACTATCCAGC ACACACATCACAGCTTGCACTTCTAGCAGCAGTTTTTTACGGGTAGCCGT TGACGAGGAGACGTCCATACCGCTTGGGTGACAGACAAGATCGTACAAAA CAAGCGATGACACTATTGTCATAATGTCAATATACAGACAGCGTTGGAGA CCGCACGTATATGCCAACAGCAGTACAGGTGAAGATCCCTCATTGAAATT GGATTGTTGCCTCAACGTTGCTGACAGTGAATAACACCCCCCTCCCTCCC ACCCCCGAGTATTAACTTATCACATTTGACTTCGAGAACAGCTCGGTGCT GCTGCTATGCATTGTGACACGGAAATATGTCATTGGAAATGTCTCGTTAA GATCTGGCAATCGGTAAGCTCTTTTGCCAATCTTCCCTCTTCTTGCTCCT CGAAGAAAGGAGAATGAAAAAGCCAGTTCGAATAGTCTCAAGGAGAGGTG TTGTACATCGTTATCTGTGTGCACGCAGAAGGTTCGCGGTCCCGACTTGC GCACTTCGGAAGGTGAGTAGCATTGTCGCCCGCGTTATATTTCATTTAAC ATGGCGCACCTTACTCGTCCTGTCGTACAGATTATAGTACCAATACTTTG CCCACGGAGCTGTTGCGGTTGAGGACCTAGGAAACTCGCCTCTTTCGGTG ATATCTTTGAGGGGCATCTCCGCCTTACTCTGAACAGTTTTTTGTCGGTC CACCCCTAGGAGCCAGATTTATTTTGGCTGAAACTGATGAAATATCGAAA TAGGTTTTTCAGAGCGCAATAAGGAACGATTAAAAGAAGCATGAAGAGCA AAACCCCTAAAAGTATCGAAAGTCGCAAATAAAAAAAGGGGTCAAGGAGG GGGCTAAAGCGGGGGGGAGAGTAGGCCGCAATAACTATGACTGTAGTATA CCTATGGAGGAAGACTAGTCATCCGCGATCGGAGATACTCATGATGCTGC AGAGGTCGCCGTAAGCCCCGGAGATCCACTTCGGATAAAAGCGCAGGGGG AAGGGTGCGCGGGGAATCTGGCCAGCCTTCTCGTACAAGCTGGGCCGAGC GCGTCAGGCAGCCAAGAAAGTCATATGCTTGCGAGGAGAAGTGGCAGTCA GAACACTATCGTGTGTGTGTTACGTCAGGCGTGTGCAGTAGGGACCTTTC CGTTAGATGTCACGCACATGCACTGGAGAATGTAATATAGCCATTCAGGA TTTCTTTTTTTCTGACCCATTGGGTATAGTTTCTCCTGGCTGCAAATACC AATCTGCAGTGGAGTGCAATTCGGCCTCAAATAAGGCAGACGGCACAACA AGATATGTGTTCACAATTCGCAACAACGGCCTGAAACAATTACCAATTTC TAAGTGCAACTTCGAGCAAAGCAGGTGCTCCACTCGTAGCCAAATTTCAC CACCTAAACAAGTTTGTGGTTTTAGTAGCTGAACTAACAACGTACATGTG TGCATGCAGCCAAGATTGCGTAGTGCGGCAGTGAAAAATACACACTGAGC GAGCCGTACTTTTGGCCGAAAGTCCGAACTGAGAGGGGGAGTGGGGGTCG AAGATTTTAATCCTGAAGGCCCCTTGGGCGCCAGCTTCGATTCAACGATC AAGTATTTCTTAGGAAACCCCCAATTTCAGCCTTACATGAAAGATGGGTG TATCGAATGAACCATGCCCAGTGATTATCGCCCATGATTGCGAGAGTCGG TGGTGGGCGTGGCCACCATCATGGGAGCGCCGCACCAACAATCCCCACGC TCTAAGGCAGCATCTTCGGGTGCTTTGTATTACTTGTATGTGCACCCCCC CCTTTTTCTCAACACCGCAGTACCGACCAGTTTGTGGCAGTGGAGACAGT ACAGGTAGACTCGCCCAACACGACGTCTATGCTGTAAAACCGGTAGCATT TAGGGTGGATTGCTCCTAGACTAATACTCGCAAGGCGTGCTGGTCTGCCT CGTCTATTCAACGGGGGGCTCCTTTGTCAAAGAGGCGCAAGTAGCTGAAA GAAAAGATTGATCGGTATAAATAGGCGAGGCTCACACAAGAAATGAGAGA TGGAACACACAGCTTTTTATTTTATGTAGGCCTTGAACATATGTATAAAC GAGACCTAGATGACAAAAACATAGATATCAGAAGCAAACCGGTTATACGG ACCTTGCTGCCCTATCCGACTCAGACCCAGGTTCTGGTTCTGGGTACGAT GACGAGGGCTTCACTATTATAGATGGGCATAGGAGGTGTGGGTCACAAGC AACCACCGCTTCCCCACCCCTGTATATCCTGTCTCCACCGCAGCACGCCC CTCAAACCCTTTGCACCCCCATCGCAGCAGTAGTCGCGCCACCGCTTCCC ATGTACGCCGGCCTATCCGGCGCGTAAATGCTACACGTCGCACAAAAGTG ACCCCAACCGTTGTTGCCCCCACCCCAGCCGCTCTGCTCGCAGCAACCTT TTCATAATCGCACACCTAAGATGACAGCACCACCCTCGCCCCGCATGGAT GTCCACCATGTGGGTGGGCAGGCTACCGGTATGGTATAAATTCATCTGGT AGAAACTGCCCCAAGACTCTCTCTTCCTACACAAATTATCGTAGAATCCG GAGTCGCGCTGGTCAACCTCGGCGGGCTAATTTGTTTCAGAGACGTGAGC AGCTAAAGGAAAATGTTAATTAGTACATGGGCAGATTTCACAAAGGATAT GAAAGATGGATCGTACAGACAAAGACAGCTTTTCATCATATGTAGCTCGT TGAACACATACATAAATCAGACCTAGATCACAAAGAACATGAGCATCACT AACAGAAACAGATAGTTATCAGCTCCCACGCGAAGCCCTGGATAACCCAT ACGATGTAAATACGTAACGTCTACACTGCTCGTCGACTTCTTGACTGAAC CAAGGGCGTCGTTGATTAAATCTCAGGGGTGACACTTTGGAGAGTGGGGT AGGGGAGGTATTCCTTGAAGTCTCCTAGCTATACCAATACTGGTCATATC TCAATTCTGACGGGAACCATTCAGTCATCTTCCGCGTCAAGATGAGTCCA GATATTCGTTAACCCATAGTATGCCCGGCCTGTAGGTAGTAACAGTTATA TCACTAAAGGGCCCCTGTCCTGGATACACCCAGAGATTTTAACCTATGGC ACAATTACTCCAATTCTCCTGCTTGATTATGATATTATGGTAGTCCCGCC ACACACCTCTCTAAGTTTCATCACACTGGCACAGTGCGTTTGATATTGGT ACCTACCCCTCCTGAAATTCAAGGTTTTCGAAGAACTCCATTACACGCCT CGGGTAAGTTTGAAGCCTGAGAAATTGTGGTTCTTGAATGTGTCCGCCCC GAGATTTCAACATTTCAACGTTTCCACTACAAGAACGGCTGCTAGGAAAT AATCTCAAGGTTCCCACAAGCCGTAACAATTCCTTTTTATACATCGCCGG CGTCCCGGCAGTACCGCCCACGCACTCGTCCATAGCATGTACGAGTGGAA CGTGTGGGTTATTCACCTTTCCGATCTATTTTCACCAGGGAATATCCAGA ATGTATTGAAGTTGTTTGTACTCATAGCCCACGCATCTGGTCTCCTGCTC ACCAGTAGAAACACCCTGTCGGATCTCAAGGCTCATTGTCTACTTTTGTC GCCTTCGCTGTTCTTCGTGGGTGGGGGTCGCGGTGGGACGGTGTTTGTGC GCAGACCCGCCGTACCAAATCCAGCAGCTCTACCGGGAGGGCAGGTTCGA CTCTTGCCACGACAGTTGGAGCGACTTGAAAATATGTATCAAGGCCAACC TCGCGTGGACGACAGAAGAAGCACATGTACGTTTCGTTTCATGTTTGACC GCCCCGCTTCACTCTGCCCCGCCCTCGTCCGAGTGAACCCATGTGGAATT GTTGCGACGTATTGCGGTGCATGATAGTACTCGCGGTATGGAACGGCGCG ATACAGACACGGGTGCGGCGCCTAACGCCCTACTCAAATAGTTCCAGGCA CTAGCGTACCAACTTGATATATTTGGGAATCCTGGGGCATCGAACTTTAG AACCTGAGAAGGCTATATCGCTATAGGCGTAAGACGTGCTCTAGTTTGTT CCTTTCCCAATGGCTGCCCTCACGCCAACTGCTTGGTGTTGTTTCAGGCA CCTGTTGGCTTTCCCCGGTATTGTCCTTGTTTTTTGCAACCGTGAAGTAG GTAATGATGGCTTGTTGCGCTACAACTAAACAAACTAGGCTATGGTCTTC GAAAAGTAACAGTTTTTTACTTGAAAAGGTATGTCGAATGTTTTCCAGGA GAAACTGCTGCATTTCCAGCTATTCCGCATGGGTACGGCTGTTGTTTTCT AGCATGCAGGTAGCCGCGGTAGCCGAATTATCCCCGCTTATCTTCAGGAA ATACTACAGTGATTTTCTGCGCATACTCCTGTGTGGAGGGTGTCCATTTG AACCTTGCAGGCGTATTTCAGATCGGCGGTGTAACGGGGTACTTGCCCCA CAATCTCCACAATAAAACATCGCTCCGCCGTAAGTAATTGGCTCCTAGGG AACGAAGATCGGGAAACTATAACTGCTATTTGAACACCGTGCTATAAATT CTCATAGTTGAAGGATAGGCTAAACCTACAAGCGGGGAATGGACGAATTT GTAGGTTGTTTTAATCAGGTATACTGTCATGTTCGCCGTCGTTATCTGGT GTATTGATCATGCCTCACAGTTATTGATCCTCTTGCCAGCACTACGAATG TCCGTTGGTATCTGACCCACTTCCTCACCCTCATTCCCCACCGCCGCCGC CGCCCCGACCCGCTGCGTCCTCTCTTCGGCGACCCGAATCCCGCCCATTT CTTGATATTTTTCATTCGCTGCGTGTGTGCTTGTTGGTGCGCCGTTCTTT CATGTGTTTTGGGTTGCAACTGTTCTTGCTGTTGGTGCTGAGTGAGCAGC AAATCATGCAGCAGGTTTCCTATAAGCAGCGGCAGGGGGACAAAAATCCA TCGATGGCGATATGGGAGAGAAAAACGAAACCGTCGTTTTATTGAACGAT GGGGAGCAGACGGACATAACTATTTCAATAGTAAAAGTATTGCACACGCA CTAACAGCCAGCAGCGAGTGGTGAAGTAAACCCGAATATTGATAAGTAGT GTAAGAAGCGGACGCCAGGAAGAACGGTTTCGTTTGGTTGTTTTGGAGAT ATCAATGGCATTTTATTATTCCTTCCCTTTTTTTTTATCGTCTTTCCTTT GTCGTTGCGCGCACCACTTAGCAGTGTGTACTAGACGTTTAGGATGGCTT TTTAGGATAAAACGTGTTTGCACGATTTTCCCGAATTACGTGCCGAATCA AGTATGACTTGAACAGAGTCTGTGAAAGTACATGGCATCAGCGTTCGTTC GGTGTTGGTGTTTTTCATGTTGGGTCCCCTGCTCCCGAGATCTGGGCATT CAAGGCAACAATCTACTAACCGTTCACGGTTCCCCTTGATTTTGCTGTTT TGCTCTATGTCTTGAGATGCCTTGATCCCAATCTTATCGAAAGTAGACGC AATCTATCCTTATAGAAAAAGTAATAGTTCAAACTCATCAGATTTTAGGG ATGGGGTACATTGCGCAAATTACAACTGAAAACTGTTTTCATTCGAAAGA AAAAAGTCATCCTACACTTCTAGTACACCCTGTTAGTTGCTGTTGTACTG TCTGTAGCGTCCAACAGTTTGGGAAGAGAAAGAAGGACGAGCGAGTGGTT GGGTTTATTTCTGATGATTAGCTTACGGTTTTGCACCTTGACCTACTGTT TCAAGTACATCGTTTTTTCCCGGACTGTGTATTGTCGGGCAAAATATTTA AGAATTGCGTTGGATTCTTCGGCGAAACGGGTCGCAGCACCACCAGCCAG AGAGTAATCATGCCACAGCTTCCCGGCCACAATACGTATAGAAGGGGCAT TTCAAGAGCGAATTAAAGGAGGAGCGGACGAACGAGCTCATATTGCAGTA CCTCGTGAAGGATCTCGGAGGCTTCGATATGGTGGGATCCCCCAACTTCA GGCACATGATTTGCGGCCTGACCAGTAAGTCCCACTTGTTGCTGCCTGGA GCGAAAACATAGTGAAGATGGTCAAAGATAAAGTGACCGCCCTGCGGAAC GACAAAAAGGCGGGGGTTTCCCGACGACCTTTGTCTTTCACTGGCGTTGA GTGGGATTCGCGGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4003:7597..14213+

>mRNA_H-paniculata_contig4003.10380.1 ID=mRNA_H-paniculata_contig4003.10380.1|Name=mRNA_H-paniculata_contig4003.10380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4003:7597..14213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAAATGCACAAAAAGGAGAATGAAAAAGCCAGTTCGAATAGTCTC
AAGGAGAGGTGTTGTACATCGTTATCTGTGTGCACGCAGAAGGTTCGCGG
TCCCGACTTGCGCACTTCGGAAGAAAGGAGAATGAAAAAGCCAGTTCGAA
TAGTCTCAAGGAGAGGTGTTGTACATCGTTATCTGTGTGCACGCAGAAGG
TTCGCGGTCCCGACTTGCGCACTTCGGAAGACCCGCCGTACCAAATCCAG
CAGCTCTACCGGGAGGGCAGGTTCGACTCTTGCCACGACAGTTGGAGCGA
CTTGAAAATATGTATCAAGGCCAACCTCGCGTGGACGACAGAAGAAGCAC
ATACCCGCCGTACCAAATCCAGCAGCTCTACCGGGAGGGCAGGTTCGACT
CTTGCCACGACAGTTGGAGCGACTTGAAAATATGTATCAAGGCCAACCTC
GCGTGGACGACAGAAGAAGCACATCAAATCATGCAGCAGGTTTCCTATAA
GCAGCGGCAGGGGGACAAAAATCCATCGATGGCGATATGGGAGAGAAAAA
CGAAACCGTCGTTTTATTGACAAATCATGCAGCAGGTTTCCTATAAGCAG
CGGCAGGGGGACAAAAATCCATCGATGGCGATATGGGAGAGAAAAACGAA
ACCGTCGTTTTATTGA
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