mRNA_H-paniculata_contig400.10371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig400.10371.1
Unique NamemRNA_H-paniculata_contig400.10371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig400.10371.1 vs. uniprot
Match: D7G7Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.160e-9
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 3 
Query:  354 GQAQIQRGSAAIKEIPEMEDVPEDPILFQKSLGARAEQINLALLELKPKLTALKDPQARREVELHVRDLTRRGHLISEAKRKLDAILLER 623
            G+A +Q  S     +P  +   E     Q  L AR ++IN  + EL P+  A+KDP+ARREVEL ++ L R G  ++E  R+LDAIL ER
Sbjct:   13 GRAILQGSSKLSSRLPRPQVQLEQAQQQQAHLAARVQRINATIEELYPRTAAVKDPEARREVELRLKGLARHGLFVTETWRELDAILAER 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig400.10371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z5_ECTSI2.160e-942.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig400contigH-paniculata_contig400:25390..29991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009560.1
Exons2
Model size1970
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig400.10371.1prot_H-paniculata_contig400.10371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig400 26725..29791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930225.620841-UTR-H-paniculata_contig400:25389..267241622930225.620841-UTR-H-paniculata_contig400:25389..26724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig400 25390..26724 -
1691481199.0534031-UTR-H-paniculata_contig400:25389..267241691481199.0534031-UTR-H-paniculata_contig400:25389..26724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig400 25390..26724 -
1622930225.6737635-UTR-H-paniculata_contig400:29791..299911622930225.6737635-UTR-H-paniculata_contig400:29791..29991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig400 29792..29991 -
1691481199.093962-UTR-H-paniculata_contig400:29791..299911691481199.093962-UTR-H-paniculata_contig400:29791..29991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig400 29792..29991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930225.6336048-CDS-H-paniculata_contig400:26724..268751622930225.6336048-CDS-H-paniculata_contig400:26724..26875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig400 26725..26875 -
1691481199.0707042-CDS-H-paniculata_contig400:26724..268751691481199.0707042-CDS-H-paniculata_contig400:26724..26875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig400 26725..26875 -
1622930225.6502056-CDS-H-paniculata_contig400:29507..297911622930225.6502056-CDS-H-paniculata_contig400:29507..29791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig400 29508..29791 -
1691481199.083197-CDS-H-paniculata_contig400:29507..297911691481199.083197-CDS-H-paniculata_contig400:29507..29791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig400 29508..29791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig400.10371.1

>prot_H-paniculata_contig400.10371.1 ID=prot_H-paniculata_contig400.10371.1|Name=mRNA_H-paniculata_contig400.10371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MMIMVPAASVLRFTSRRLVHMSTSVRSAVIAINMTADLRNHEEVPHAGKH
QGQAQIQRGSAAIKEIPEMEDVPEDPILFQKSLGARAEQINLALLELKPK
LTALKDPQARREVELHVRDLTRRGHLISEAKRKLDAILLERWQT*
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mRNA from alignment at H-paniculata_contig400:25390..29991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig400.10371.1 ID=mRNA_H-paniculata_contig400.10371.1|Name=mRNA_H-paniculata_contig400.10371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4602bp|location=Sequence derived from alignment at H-paniculata_contig400:25390..29991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATGTACCCCATTGTGGCCAAACACAGTGGGTACATGTATACACAACC
TTTGCTTCACCAATCAGGGTAATCAAGGTCCTCCCGCGTCCTCACGCGTC
ATCACCTTTTCCGCTCATTCTTCGACTTTTCCCCTTGAGCCACACTCACG
CTTGCGATTGCGTTAACCCGTCATTCGTCGATCTACAACTTGCGTTTCTC
ATGATGATTATGGTTCCTGCTGCATCAGTATTGAGATTTACGAGTCGAAG
ACTTGTGCACATGAGCACAAGTGTTAGATCTGCTGTGATAGCTATTAATA
TGACCGCGGACCTTCGAAATCATGAAGAAGTTCCGCATGCTGGCAAACAC
CAAGGTCAAGCCCAAATCCAACGTGGGAGCGCAGCGATCAAAGAGATACC
GGAGATGGAAGATGTTCCGGAGGACCCAATTCTCTTCCAGAAGAGCCTGG
GGGCGAGGGCCGAGCAAATTAACCTGGCGTTGCTGTGAGTTTCGAACTGG
TCGTCAGTTGAGTTGAAAGGAGGTGTAAAATGGCATGTTTGTGTCGCCAG
GTGTCACTGTAAATCCGTGGGTTGAACTGTTCTGCACCATCCCAACTAGG
TTTTGACTGTTATAGCTGTCCCGTCCGCAACCCCCAGGTGTATTGATTTA
TAGTAGCTCATTGCGCTATATATACCCCAGCACCAAGAATTGAGCTTCTG
TCCAGTGAAGGCAAATCAGCAGCACGTGTTGTATTTCAACTGTCCTCCTA
TGAAGGTCGTTAATCGTGCCTAGTTGTTATTCATGATTCTATTTTCGTCT
TGATTTAGCAGCGTGTGAGCTCGTCGAAGCGCTTCGGTTACATGGTTGTC
TACTACTTGGTATACTGAACTGACCGTGTGCGACTGACAGTTGAGTATTG
CTGATGATGAAATACAGTCAACGTTTCTCTGGTATCGGATCGCACGATAA
AATACAGACACATGTATTATGGAAAGCGAATTTACGCCGCGCTCGATGTA
AACGAGCGAGCCTTGTTTTCCGATCACTTAACCACCACAATCATTCTATT
CGGACTATTTTTCCGAGTATAATGGTTTCGGTAAATTCAGTACATGAAAT
TTCTTTCCAAAGTTTCAAGTGGGAACATCAGCCTCGCTTGCCTGGACTGT
ACTGTGGAACGTACCTAAGCAACCCATCAATTATCGACGATCTTATTATT
GTCTAATCTGTGTTTTGAAGTTTATCTGGCTCACAGTACCTTCACGTTAG
GCAGGGCTGTACCACCTGCTGTGAATACCTACCTAAAGCACATTGCAATT
ACATCATAACGCATCCTAAGACCGTGGGTCCGACAGAGTTTGAGATCAAT
TATGTAGAAAAAAAAATACCAGAAACCACACACTTCACGGCAAATTTGCT
AAGTTTGCGACCACACCCGAGATCCTGAGTGAGACGAGCGCAGGAGGCAC
CAGCGGGAACGACAGCCCACACGACGCCATAAATGCCATCGGGGTGTCGG
CACCGGCACCGGCGGATTCTCCGCGCGAGCCTTACGCTGGGAGCGGTTGC
ACTCCACAGGAGGCTGCCGATGGTGCAGGTCCTTCGCCTGTTGCTAACCC
TTAAATAGCTGGGGAAGCTATTGAAGACATCGAAGCGGCTTCGAAGGACA
ACCGCAAGGGAAAGGCGTGCGATTACCCTGTGTCGGCTTTTCGTTGCACA
GGGGCAATGCAGGCGGGAAGATAGGAAGTTATCCAACAGCTGAAAAGCTG
AAGGCAGTCGACTACGCTCGCAAACGTTACTGAGATGGGAAAACTGTAGG
CAATACCGGACATCTTTCGAGACACACCCACGTTCTTGCCACATACCCCA
CCTCCCCCCACCTCGATTATCGTGTGGATATCGCGCCGCCGCGGTGCGAT
ACCCATCAGGGGTGTGATACCTCCTGGTATTACAGCATATGCTGCTCAGT
TTATCAAAAGCTAAGGCTCGAGCTTTGTTTCGTAGTATGATGGGCAGTGA
AGTTCTCCCGTTCATGCTGAGTTCCTTCGTCACTCGTTTCACCTCCGTGG
CCCTGGTCACTATTTTGTTCCTGTACAAGTTTGATTCGCCTTAGATTACT
TCATCTTCAACAAAACATCTCTAAAACGCTGGGACTTTCCACGTTCAGAG
TCTGAAATCGAACATCCATCGGTGACGGGGAGTGGTCGGATGCGAAGTTG
CCAATCGTAGCATTTTCCTGTTTTTTGGCCCCTTGCTGCACGACCCGAAA
AGAAAAGTGAAAGGAGCGCAATAGAACTAATGACCGAAGATGAATTGAGT
GCACTTCTGGTTGGTACAGTTTTCATGGGTGAACGTGGGATACCAACCAG
AATGCCACAATTATGCTTGACTAAATCTTGAGTGGTTATTTTTACCAGGG
GTGTTCTCGGTAGCGATGCTCAAGAAACGAATAAACGGTACGGTAAGGAT
TTACTCGGATTCGTGTTGGTCAAGGTTATTCGACATAACGATAGCACGGT
AGGGTACTGTAGGGCCATGTAGATTTCTCGGTATTTGCGAGGTTAGCGAT
ATTCGTCTTTTCCTCCCGCGTTATGGTACCTGGTATTTGGCACAGTGTTT
CAGTGCACAAGCCTTGCCCAAGCCGAAGATACGAAACACGAGCATAAAAA
CCTTGTGTATAGTATACGGTTAGTACGGGGAGTTCCACAAGGAGGCGACT
CATTTATTCCCAGAGCCAGTTCCAACGACTTACAAATCTCGCAGCTTGAA
GGAATGGCATTGGTACCGTAACGAGTTTTCGCGGGACGGTACACGGTAAA
TCGCTCTGATACCGCGGTAATCACGTTTGGCTGTGCCGTGCATAGCAAAT
GTAAACGGGAGAATACTTTTTTGCGGTGTCGGTACCGAATATCACATAAC
ACCGAGGTATTTTTACCCAAAACGCCCTGAATTTTACTCACCACATTTGT
TTTTACTGTTGAGTCATACATTTCGTCCGAAATAACAGCTGGTCGTGTTT
GTATTTACTTCACCGCTGTTTTAAAAACCGCATGTACCTCATCCCTCTAC
TCTACCCCCCCCCGCCCATAATTGAAGATCCATCGCGACCATGCGTCCCT
TTGTATCCCTCCTCAGCGAATTGAAACCCAAGCTGACGGCGCTCAAGGAC
CCTCAGGCTAGAAGAGAGGTGGAACTCCATGTGCGAGATTTGACTCGCCG
AGGACATCTCATTTCCGAGGCGAAGCGAAAACTGGACGCAATTCTATTGG
AGCGTTGGCAAACTTGATAAAACCAACGGCGATGTATGTGTGTATTCGCA
TAGACGGGGCTTTTGGATATTTAGATGAATTATTGACAAGGGCGTTTAAA
CGGTGTTTGACATCGATGTTCTGTACCTATTAATTCCCGCTCGATACATC
TGCATGATTAATTCTGCATAGAGCTCGTGAAGTCGCGTGTGCATATTTGG
GTTAATATAGGATTTAGTCATTGTTATTGGTAACCTGAGTCCGCGAACTT
GATGGATGGCACCCAGGACGAGCTGGGGAGAACTGAACGGTTTACACGCA
AACGGCACTTTGCTCTCGATTTGCATTGACGATGCTTGACGCGTGAGCGC
GGAGAGCGAAAGCATTGCCGCAACATCGGTTGTCTTGTTTGGATACGGCA
AGGAAGCATTCATCCAGAGTGTGATGACCTCAGCAAGAGCGTTTATTTGT
AAGATCTATGTACCATAGTGGAACGCACAGACTCGTAGTGAAGATAAGAC
GTGATCGCTGGAAACGGAAATAGATAGAATGCTGTCAGACAGGACAGGAC
ATCGTGTGGAGGTTGACTTGGATTAATACTTTGAATACTCAGCGACAAAA
GAAGAAAAAAAGCGATGTTGGCGATCCCCTCCTCCGATATACCATCAGTA
TTTTCTCGTGTGCATGAGGCAAAATCGGATTGTTTTTTTCGTCGGCGAAA
ATCCGAACTGTGCAAAAATGGCGGTACATGGGGTGGGGGTAAAAGAGAAT
TAAAGCGAGTACCCCTTGGGCGGAAAAGGGACGTAGAGAAAGAGAGATAG
GGTCTCGTCTGCCTGGGGTATAAATATACATTTTTTTTAGTTTTGGGGGG
TGGAAAGGGGGAGGCAACAATTGTATGTTAGTGTTATGCTCTCGGGATTC
AGGATTAAAACGGGAAGAAGCCGTCGTAAAGAATATGCATACTAGCAATG
ATATCGTAGTCGGTGGATCTGATTTAGATTTTAGATACATCTGCTTCTGT
TTCTGGGTTTGTGCTGCTGGGGAGTTGACTTGAAACGTGCGGCAAACGTC
AAGTAGAGATAGGAGAAGGTCATGGAAGGTTTGATGTATAGGTCCAGCAT
GCAACAGTCTTTTATTATACCCTCGCCTTGATGTTTTCAAACATCCACCG
GCAGTCGACCTTACTGTGTTAGGATATTGTCGGTCACCGAGGAGTTGACC
GATAAATACTGCTTGTGTATATGCTACGCAAAAAAACGGTATAAACTTGA
AAGTTGAGTAAATATTATTAATCAGTCACGACAAGTAAAACAAAAAATAT
ACCGAAGTTCTTGGGGCTGCGCATAGAGCGACATTTGAATATTCAGAACG
GT
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Coding sequence (CDS) from alignment at H-paniculata_contig400:25390..29991-

>mRNA_H-paniculata_contig400.10371.1 ID=mRNA_H-paniculata_contig400.10371.1|Name=mRNA_H-paniculata_contig400.10371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig400:25390..29991- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATTATGGTTCCTGCTGCATCAGTATTGAGATTTACGAGTCGAAG
ACTTGTGCACATGAGCACAAGTGTTAGATCTGCTGTGATAGCTATTAATA
TGACCGCGGACCTTCGAAATCATGAAGAAGTTCCGCATGCTGGCAAACAC
CAAGGTCAAGCCCAAATCCAACGTGGGAGCGCAGCGATCAAAGAGATACC
GGAGATGGAAGATGTTCCGGAGGACCCAATTCTCTTCCAGAAGAGCCTGG
GGGCGAGGGCCGAGCAAATTAACCTGGCGTTGCTATGATGATTATGGTTC
CTGCTGCATCAGTATTGAGATTTACGAGTCGAAGACTTGTGCACATGAGC
ACAAGTGTTAGATCTGCTGTGATAGCTATTAATATGACCGCGGACCTTCG
AAATCATGAAGAAGTTCCGCATGCTGGCAAACACCAAGGTCAAGCCCAAA
TCCAACGTGGGAGCGCAGCGATCAAAGAGATACCGGAGATGGAAGATGTT
CCGGAGGACCCAATTCTCTTCCAGAAGAGCCTGGGGGCGAGGGCCGAGCA
AATTAACCTGGCGTTGCTCGAATTGAAACCCAAGCTGACGGCGCTCAAGG
ACCCTCAGGCTAGAAGAGAGGTGGAACTCCATGTGCGAGATTTGACTCGC
CGAGGACATCTCATTTCCGAGGCGAAGCGAAAACTGGACGCAATTCTATT
GGAGCGTTGGCAAACTTGACGAATTGAAACCCAAGCTGACGGCGCTCAAG
GACCCTCAGGCTAGAAGAGAGGTGGAACTCCATGTGCGAGATTTGACTCG
CCGAGGACATCTCATTTCCGAGGCGAAGCGAAAACTGGACGCAATTCTAT
TGGAGCGTTGGCAAACTTGA
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