mRNA_H-paniculata_contig39985.10355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39985.10355.1
Unique NamemRNA_H-paniculata_contig39985.10355.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.310e-20
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 AVVEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            AV+EAR SY+  EASLG+VPDEFLDPVLCHVMRDPVLLPTSGT+LDR
Sbjct:  867 AVIEARASYEASEASLGEVPDEFLDPVLCHVMRDPVLLPTSGTILDR 913
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A8H7VP33_9FUNG (U-box domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VP33_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 9.820e-12
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   31 EEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            EEE  LGDVPDEFLDP+L  VM DPVLLPTSGT++DR
Sbjct: 1007 EEEEELGDVPDEFLDPILSSVMEDPVLLPTSGTIVDR 1043
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: R4XJD8_TAPDE (Ubiquitin conjugation factor E4 n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XJD8_TAPDE)

HSP 1 Score: 64.3 bits (155), Expect = 8.750e-11
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 AVVEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            +V + +V Y ++E  LGD+PDEFLDP++  +M+DPV+LPTS T++DR
Sbjct:  929 SVEKRKVEYQQDEDDLGDIPDEFLDPLIGELMKDPVMLPTSKTIIDR 975
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: H2Y6Z0_CIOSA (U-box domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Y6Z0_CIOSA)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 VVEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            V E R+  ++ E   G++PDEF DP++  +MRDPVLLPTSGTV+DR
Sbjct:  107 VEECRIKLNKAEVDYGEIPDEFKDPLMDTLMRDPVLLPTSGTVMDR 152
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A6V1PG80_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PG80_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.930e-10
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   37 EASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            E  LGD PDEF+DPVLCH+MRDPV LP SGT++DR
Sbjct:   58 ELELGDAPDEFVDPVLCHLMRDPVRLP-SGTIMDR 91
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A077WVI4_9FUNG (U-box domain-containing protein n=3 Tax=Lichtheimia TaxID=688353 RepID=A0A077WVI4_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-10
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   34 EEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            EE  LGDVPDEFLDP+L  VM DPVLLPTS T++DR
Sbjct:  989 EEEELGDVPDEFLDPILSSVMEDPVLLPTSNTIVDR 1024
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A0D6EQ36_SPOSA (SPOSA6832_03872-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EQ36_SPOSA)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-10
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 VEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            VEA  + DEE+ +LG++PDEFLDP+   +MRDPV+LP+S TVLDR
Sbjct: 1122 VEAIKAADEEDEALGEIPDEFLDPLTYDLMRDPVILPSSKTVLDR 1166
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A0N8PZU9_RHOGW (U-box domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0N8PZU9_RHOGW)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 VEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            VEA  + +EE+ +LGD+PDEFLDP+   VMRDPVLLP+S T++DR
Sbjct:  844 VEAIKTAEEEDEALGDLPDEFLDPLTYDVMRDPVLLPSSKTIVDR 888
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A8H7PMH3_9FUNG (U-box domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PMH3_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   13 ARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            +R    EEE  LGD+PDEF+DP+L H+M DPV+LPTS  ++DR
Sbjct:  909 SRQEEHEEEDELGDIPDEFIDPILSHLMEDPVVLPTSNMIVDR 951
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BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Match: A0A369J974_HYPMA (Ubiquitin conjugation factor E4 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369J974_HYPMA)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 VVEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR 141
            V EA+   +EEE  LG+VPDEFLDP++  VMRDPV LP+S  +LDR
Sbjct:  987 VEEAKTLMEEEEEDLGEVPDEFLDPLMATVMRDPVRLPSSKAILDR 1032
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39985.10355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU34_ECTSI7.310e-2085.11U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8H7VP33_9FUNG9.820e-1278.38U-box domain-containing protein n=1 Tax=Mucor circ... [more]
R4XJD8_TAPDE8.750e-1153.19Ubiquitin conjugation factor E4 n=1 Tax=Taphrina d... [more]
H2Y6Z0_CIOSA1.710e-1056.52U-box domain-containing protein n=1 Tax=Ciona savi... [more]
A0A6V1PG80_HETAK1.930e-1074.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A077WVI4_9FUNG2.240e-1075.00U-box domain-containing protein n=3 Tax=Lichtheimi... [more]
A0A0D6EQ36_SPOSA2.240e-1062.22SPOSA6832_03872-mRNA-1:cds n=1 Tax=Sporidiobolus s... [more]
A0A0N8PZU9_RHOGW3.060e-1062.22U-box domain-containing protein n=1 Tax=Rhodotorul... [more]
A0A8H7PMH3_9FUNG3.060e-1058.14U-box domain-containing protein n=1 Tax=Umbelopsis... [more]
A0A369J974_HYPMA3.060e-1060.87Ubiquitin conjugation factor E4 n=1 Tax=Hypsizygus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39985contigH-paniculata_contig39985:977..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D8LU34
Preferred nameUBE4B
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000166,GO:0000209,GO:0003007,GO:0003205,GO:0003206,GO:0003208,GO:0003222,GO:0003229,GO:0003231,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007507,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008626,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0012501,GO:0014706,GO:0016043,GO:0016567,GO:0016740,GO:0017076,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030433,GO:0030554,GO:0031175,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0046677,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0051865,GO:0055008,GO:0055010,GO:0060255,GO:0060415,GO:0060537,GO:0061061,GO:0061383,GO:0061384,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0097159,GO:0097190,GO:0097237,GO:0097305,GO:0097306,GO:0097367,GO:0120036,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903320,GO:1903322,GO:1990234
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.7501152-CDS-H-paniculata_contig39985:976..11201622930222.7501152-CDS-H-paniculata_contig39985:976..1120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39985 977..1120 -
1691481197.7335718-CDS-H-paniculata_contig39985:976..11201691481197.7335718-CDS-H-paniculata_contig39985:976..1120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39985 977..1120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39985.10355.1prot_H-paniculata_contig39985.10355.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39985 977..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39985.10355.1

>prot_H-paniculata_contig39985.10355.1 ID=prot_H-paniculata_contig39985.10355.1|Name=mRNA_H-paniculata_contig39985.10355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
AVVEARVSYDEEEASLGDVPDEFLDPVLCHVMRDPVLLPTSGTVLDR*
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mRNA from alignment at H-paniculata_contig39985:977..1120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39985.10355.1 ID=mRNA_H-paniculata_contig39985.10355.1|Name=mRNA_H-paniculata_contig39985.10355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig39985:977..1120- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGTGGAAGCGAGGGTTTCGTATGACGAAGAGGAGGCGTCTCTGGG
GGATGTCCCGGACGAGTTTCTCGACCCCGTCTTGTGTCACGTCATGCGAG
ATCCGGTTCTGCTACCGACCAGTGGTACTGTATTAGACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39985:977..1120-

>mRNA_H-paniculata_contig39985.10355.1 ID=mRNA_H-paniculata_contig39985.10355.1|Name=mRNA_H-paniculata_contig39985.10355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig39985:977..1120- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGTGGAAGCGAGGGTTTCGTATGACGAAGAGGAGGCGTCTCTGGG
GGATGTCCCGGACGAGTTTCTCGACCCCGTCTTGTGTCACGTCATGCGAG
ATCCGGTTCTGCTACCGACCAGTGGTACTGTATTAGACAGGTGAGCGGTG
GTGGAAGCGAGGGTTTCGTATGACGAAGAGGAGGCGTCTCTGGGGGATGT
CCCGGACGAGTTTCTCGACCCCGTCTTGTGTCACGTCATGCGAGATCCGG
TTCTGCTACCGACCAGTGGTACTGTATTAGACAGGTGA
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