mRNA_H-paniculata_contig39915.10341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE) HSP 1 Score: 151 bits (382), Expect = 2.250e-41 Identity = 78/186 (41.94%), Postives = 115/186 (61.83%), Query Frame = 2
Query: 20 DPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIG-FGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLL 574
DPC + KR+ RYL P+ G+ F + G + G+ D DWA DI+ R+ST+GYVF + GG ISW S++Q+ V STEA+Y+A EA E V+L LG +G + ++FE+N+ +I L+K RTKH+ +R+H +RE + G + L+Y T D LAD+ TK ++ VQF+ LR+ L
Sbjct: 68 DPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFESLRDRL 252
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 151 bits (381), Expect = 2.520e-40 Identity = 79/191 (41.36%), Postives = 115/191 (60.21%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLLM*CY 586
ME+P + KRI RY+ GI + + G L GFVD D+A D+ DRKST+GYVF L GGA+SW S++Q IVT +TEA++VA + ++L +LG IG+ T LF +N S I LSK R+KH+ +R++ +R+ + E ++ LK+ T DQL+DI TK + F+RLR + C+
Sbjct: 184 MENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLRRRMEVCF 373
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A182G3D4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3D4_AEDAL) HSP 1 Score: 146 bits (369), Expect = 2.610e-40 Identity = 74/181 (40.88%), Postives = 110/181 (60.77%), Query Frame = 2
Query: 32 EDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLL 574
E +S KR+ RY+ D+ + + + LEGF D DWA DI DRKS +GYVFK+RG +SWC+R+Q V S EA+Y + A E ++L LL +G T + E+N++ I +++ R KHV +R+H ++ I G + L YV + DQ+AD+ TKGL R+QF++LRN+L
Sbjct: 28 EHYSHLKRVLRYIQGTLDMKLVYRRDQDATLLEGFADADWAGDIVDRKSLSGYVFKVRGATVSWCTRKQVSVALSSAEAEYASLTMAVTEAIWLRGLLRDLGQRVADPTIIHEDNQACIRVAESDKPTRRMKHVDVRFHFVKNEIDAGTVRLLYVPSEDQVADVMTKGLPRIQFEKLRNML 208
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 147 bits (372), Expect = 2.880e-40 Identity = 79/179 (44.13%), Postives = 110/179 (61.45%), Query Frame = 2
Query: 38 FSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLL 574
++ KRI RYL DLGI + + + GF D D+A D+ RKSTTGYVF + GAI+WCSR QQ + +TEA+YVA EA E ++L LL I + +L+ +N+SAI L K RTKH+ +R+H I+E + G + ++YV++ DQLADI TK L V+F +LR L
Sbjct: 74 WNAVKRIMRYLKHTKDLGIRY--TFSDEPVHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLRTKL 250
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A2I0AK16_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AK16_9ASPA) HSP 1 Score: 145 bits (367), Expect = 3.580e-40 Identity = 82/195 (42.05%), Postives = 118/195 (60.51%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAF--GGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLLM*CYFT 592
ME+P KRIFRYL D GI + GG S+ L GF D D+A DI DRKST+G+VF + GA+SW S++Q IVT +TEA++VA + ++L ++L + F G+T +F +N SAI LSK R+KH+ ++++ +R+ G + L Y ++ DQ+ADI TK L V F +LR LL C +T
Sbjct: 1 MENPTEVHLLAAKRIFRYLKGTTDFGIFYKNGGDSS---LIGFSDNDYAGDIDDRKSTSGFVFMMCSGAVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLRKVLKILQFKQVGATTIFCDNNSAIKLSKNPVLHGRSKHIDVKYYFLRDLSNNGTIKLVYCRSEDQVADIQTKPLKLVTFAKLRGLLGVCSYT 192
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A2I0ANN3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ANN3_9ASPA) HSP 1 Score: 145 bits (365), Expect = 6.370e-40 Identity = 84/197 (42.64%), Postives = 116/197 (58.88%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAF--GGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLLM*CYFTVL 598
ME P KRIFRYL D G+ + G KS+ L GF D D+A D+ DRKST+GYVF + GAISW SR+Q IVT +TEA++VA + ++L +L I F GST ++ +N SAI LSK R+KH+ +++H +R+ R G + L Y ++ DQ+AD+ TK L + F +LR L C T L
Sbjct: 1 MECPKEVHLMAAKRIFRYLQGTIDYGLLYKKGEKSD---LIGFTDSDYAGDLDDRKSTSGYVFFMGSGAISWSSRKQSIVTLSTTEAEFVAASACVCQAIWLRNILEEIHFKQEGSTLIYCDNISAIKLSKNPVLHGRSKHIDIKYHFLRDLTRNGTIDLIYCKSEDQVADLFTKALKQAAFLKLRKALGICSSTSL 194
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 150 bits (379), Expect = 3.880e-39 Identity = 81/186 (43.55%), Postives = 111/186 (59.68%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGH-GLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRN 568
M +P +T KRI RYL D GI + + G L G+ D D+A DI D KST+GYVF L GGA++W SR+Q IVT STEA+YVA + +++ +LG IGF LF +N S I LSK + ++KH+ +R+H +RE +EG++ L + T +QLADI TK L FQR+R
Sbjct: 298 MANPTELHLATAKRIMRYLKGTLDFGIWYRRERKGSLSLLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIRE 483
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 146 bits (369), Expect = 5.450e-39 Identity = 76/192 (39.58%), Postives = 119/192 (61.98%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLLM*CYF 589
ME P + KRI RY+ D G+ F + +G G G+ D D+A DI DRKST+G++F L GAISW S++QQIVT STEA+YVA + + ++L ++ +G +G T ++ +N S I LS+ R+KH+ +R+H +R+ + + L+Y ++G+Q+ADI TK L + F++LR++L C F
Sbjct: 128 MEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSMLGVCSF 318
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 146 bits (368), Expect = 1.050e-38 Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAF--GGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLR 565
ME+P E K I RY+ GI + GG+ L G+VD D+A D DRKST+G+ F GGA+SW S++Q IVT +TEA+YVA + V++ +L IGFG T LF +N SAI LSK R+KH+ +R+H +RE + EGI++ +Y T +QLADI TK + F++LR
Sbjct: 152 MENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKLR 334
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 145 bits (365), Expect = 1.190e-38 Identity = 77/190 (40.53%), Postives = 116/190 (61.05%), Query Frame = 2
Query: 14 MEDPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIKDRKSTTGYVFKLRGGAISWCSREQQIVTWPSTEAKYVAGGEAGDETVYLGELLGSIGFGCRGSTRLFENNKSAINLSKGSGAQCRTKHVGMRWHGIREWIREGILALKYVQTGDQLADI*TKGLSRVQFQRLRNLLM*C 583
ME P KR+FRYL DLG+ F K NG L GF D ++A D+ DR+ST+G+VF + GAISW S++QQ+VT +TEA+++A + + ++L +L + F +G T + +N S I LS+ R+KH+ +R+H +R+ + E I+ L Y ++ DQ+ADI TK L F++LR LL C
Sbjct: 111 MERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLLGIC 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39915.10341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39915.10341.1 >prot_H-paniculata_contig39915.10341.1 ID=prot_H-paniculata_contig39915.10341.1|Name=mRNA_H-paniculata_contig39915.10341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp MEDPCREDFSTCKRIFRYLSTVPDLGIAFGGKSNGHGLEGFVDGDWAEDIback to top mRNA from alignment at H-paniculata_contig39915:1168..1866+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39915.10341.1 ID=mRNA_H-paniculata_contig39915.10341.1|Name=mRNA_H-paniculata_contig39915.10341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=699bp|location=Sequence derived from alignment at H-paniculata_contig39915:1168..1866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39915:1168..1866+ >mRNA_H-paniculata_contig39915.10341.1 ID=mRNA_H-paniculata_contig39915.10341.1|Name=mRNA_H-paniculata_contig39915.10341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig39915:1168..1866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |