mRNA_H-paniculata_contig39879.10333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39879.10333.1
Unique NamemRNA_H-paniculata_contig39879.10333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Match: UPI00053F994C (uncharacterized protein LOC104908802 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F994C)

HSP 1 Score: 52.0 bits (123), Expect = 4.610e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  244 WMSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGDGSTLVVDLVGKLD 387
            W+ DSGA++H+TNDLS +  L  P  G D +++GDGSTL +  +G LD
Sbjct:  169 WLMDSGATHHITNDLSNLA-LHAPYDGSDDLIIGDGSTLPISHIGSLD 215
[Close]
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR)

HSP 1 Score: 52.4 bits (124), Expect = 4.900e-5
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  244 WMSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGDGSTLVVDLVGKLDLIFHS 402
            W+ DSGAS+H+TNDLS +  L  P  G + +++GDGS+L +  +G L L F+S
Sbjct:  159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNS 210
[Close]
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 52.4 bits (124), Expect = 5.750e-5
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  196 PVALTNQNPTINNGNMWMSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGDGSTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSL 471
            P A     PT N  N W+ DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S+
Sbjct:  100 PRANLASTPTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISV 187
[Close]
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 52.4 bits (124), Expect = 6.700e-5
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  196 PVALTNQNPTINNGNMWMSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGDGSTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSL 471
            P A     PT N  N W+ DSGA++H+T DLS +  L +P  G + V + DG+ L +   G   L    T   P TL +V Y+P+L  NL S+
Sbjct:  318 PRANLASTPTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISV 405
[Close]
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 51.2 bits (121), Expect = 9.500e-5
Identity = 27/76 (35.53%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  244 WMSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGDGSTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSL 471
            W +DSGA+NH+TNDLS +  +++P  G + V + +GS L +  +G  +LI +S T      ++ ++P+++ NL S+
Sbjct:   64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSI 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39879.10333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00053F994C4.610e-550.00uncharacterized protein LOC104908802 n=1 Tax=Beta ... [more]
A0A5N6LS31_9ASTR4.900e-547.17Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6D2JUM8_9BRAS5.750e-538.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS6.700e-538.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A834W4R7_9FABA9.500e-535.53Retrovirus-related Pol polyprotein from transposon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39879contigH-paniculata_contig39879:1426..1896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.9285097-UTR-H-paniculata_contig39879:1425..14551622930219.9285097-UTR-H-paniculata_contig39879:1425..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39879 1426..1455 +
1691481196.567468-UTR-H-paniculata_contig39879:1425..14551691481196.567468-UTR-H-paniculata_contig39879:1425..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39879 1426..1455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.9421535-CDS-H-paniculata_contig39879:1455..18961622930219.9421535-CDS-H-paniculata_contig39879:1455..1896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39879 1456..1896 +
1691481196.579795-CDS-H-paniculata_contig39879:1455..18961691481196.579795-CDS-H-paniculata_contig39879:1455..1896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39879 1456..1896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39879.10333.1prot_H-paniculata_contig39879.10333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39879 1456..1896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39879.10333.1

>prot_H-paniculata_contig39879.10333.1 ID=prot_H-paniculata_contig39879.10333.1|Name=mRNA_H-paniculata_contig39879.10333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MGNDVQDHGNVGVEINETETKTGISNVLHKNCFSSTVDLIDVDKLDDTED
GECGLPVALTNQNPTINNGNMWMSDSGASNHMTNDLSKMYDLRKPVAGED
VVMLGDGSTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSL
back to top

mRNA from alignment at H-paniculata_contig39879:1426..1896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39879.10333.1 ID=mRNA_H-paniculata_contig39879.10333.1|Name=mRNA_H-paniculata_contig39879.10333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig39879:1426..1896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAGAATGTTAATTTTTCTGGTGTTGGGATGGGTAACGATGTGCAAGA
CCATGGTAATGTTGGAGTAGAGATCAATGAGACTGAGACTAAGACTGGTA
TCTCGAATGTTCTGCACAAGAATTGTTTTTCGAGCACTGTCGATTTGATT
GATGTTGACAAGTTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGT
AGCTTTGACGAATCAAAATCCAACTATTAACAATGGCAATATGTGGATGT
CTGATTCTGGTGCAAGTAACCACATGACGAACGATCTTTCAAAAATGTAT
GACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATGTTGGGGGATGG
ATCGACTCTGGTGGTAGATTTGGTGGGAAAGTTGGATTTGATTTTTCATT
CCACTACCGATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTG
AACTTCAACCTTTTTTCCCTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig39879:1426..1896+

>mRNA_H-paniculata_contig39879.10333.1 ID=mRNA_H-paniculata_contig39879.10333.1|Name=mRNA_H-paniculata_contig39879.10333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig39879:1426..1896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAACGATGTGCAAGACCATGGTAATGTTGGAGTAGAGATCAATGA
GACTGAGACTAAGACTGGTATCTCGAATGTTCTGCACAAGAATTGTTTTT
CGAGCACTGTCGATTTGATTGATGTTGACAAGTTGGATGATACAGAGGAT
GGAGAGTGCGGTTTGCCTGTAGCTTTGACGAATCAAAATCCAACTATTAA
CAATGGCAATATGTGGATGTCTGATTCTGGTGCAAGTAACCACATGACGA
ACGATCTTTCAAAAATGTATGACCTTCGCAAACCGGTGGCAGGCGAAGAT
GTGGTGATGTTGGGGGATGGATCGACTCTGGTGGTAGATTTGGTGGGAAA
GTTGGATTTGATTTTTCATTCCACTACCGATGTGCCTGCCACACTTGAAG
TATCATACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTTATGGGTAAC
GATGTGCAAGACCATGGTAATGTTGGAGTAGAGATCAATGAGACTGAGAC
TAAGACTGGTATCTCGAATGTTCTGCACAAGAATTGTTTTTCGAGCACTG
TCGATTTGATTGATGTTGACAAGTTGGATGATACAGAGGATGGAGAGTGC
GGTTTGCCTGTAGCTTTGACGAATCAAAATCCAACTATTAACAATGGCAA
TATGTGGATGTCTGATTCTGGTGCAAGTAACCACATGACGAACGATCTTT
CAAAAATGTATGACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATG
TTGGGGGATGGATCGACTCTGGTGGTAGATTTGGTGGGAAAGTTGGATTT
GATTTTTCATTCCACTACCGATGTGCCTGCCACACTTGAAGTATCATACT
TACCGGAGTTGAACTTCAACCTTTTTTCCCTT
back to top