mRNA_H-paniculata_contig3969.10295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3969.10295.1
Unique NamemRNA_H-paniculata_contig3969.10295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3969.10295.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.070e-30
Identity = 96/159 (60.38%), Postives = 112/159 (70.44%), Query Frame = 1
Query:  517 GEAFRSRVADADKLISKREEQSVLVRQLERELASTVSALRDERRERRGQTETLXXXXXXXXXXXXXXXXXXXXXXXMARTLMGELEALQSRCERLVALREEQSQEADKTTSRLKEDNRELEARVRXXXXXXXXXXTAREGVGSERERVTRDLGVAIAAV 993
            G+AFRS  + A+KL++KREEQSVLV+QLERELASTVSAL+DERRERRGQTETL                       M  TLMGELEALQSRC+RLVA REE+++EADKT +RL+EDNRELEAR+R XXXXXXXXX            + RDL  A+A V
Sbjct:  509 GDAFRS-ASWAEKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLREDNRELEARLRQXXXXXXXXXXXXXXXXXXXXXMERDLHSALAKV 666          
BLAST of mRNA_H-paniculata_contig3969.10295.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.720e-26
Identity = 89/176 (50.57%), Postives = 105/176 (59.66%), Query Frame = 1
Query:  484 VRGAGSEQHLFGEAFR-------SRVADADKLISKREEQSVLVRQLERELASTVSALRDERRERRGQTETLXXXXXXXXXXXXXXXXXXXXXXXMARTLMGELEALQSRCERLVALREEQSQEADKTTSRLKE-DNRELEARVRXXXXXXXXXXTAREGVGSERERVTRDLGVAIA 987
            V G+    HL G A         S  + A KL++KREEQSVLV+QLERELASTVSAL+DERRERRGQTETL                       M  TLMGELEALQSRC+RLVA REE+++EADKT +RL+E D    EAR            +AR G  +ER R+ RDL  A+A
Sbjct:  481 VGGSSGSYHLGGRAAAGEGGGAFSSASWAAKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLREADAAAAEAR------------SARAGADAERVRMGRDLQSALA 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3969.10295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI1.070e-3060.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE1.720e-2650.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3969contigH-paniculata_contig3969:7985..16326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002910.1
Exons4
Model size1000
Cds size999
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3969.10295.1prot_H-paniculata_contig3969.10295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3969 7985..16326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.3312707-CDS-H-paniculata_contig3969:7984..85631622930214.3312707-CDS-H-paniculata_contig3969:7984..8563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 7985..8563 +
1691481194.2057335-CDS-H-paniculata_contig3969:7984..85631691481194.2057335-CDS-H-paniculata_contig3969:7984..8563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 7985..8563 +
1622930214.3493297-CDS-H-paniculata_contig3969:10627..107821622930214.3493297-CDS-H-paniculata_contig3969:10627..10782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 10628..10782 +
1691481194.2168999-CDS-H-paniculata_contig3969:10627..107821691481194.2168999-CDS-H-paniculata_contig3969:10627..10782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 10628..10782 +
1622930214.3714194-CDS-H-paniculata_contig3969:14069..141961622930214.3714194-CDS-H-paniculata_contig3969:14069..14196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 14070..14196 +
1691481194.2239683-CDS-H-paniculata_contig3969:14069..141961691481194.2239683-CDS-H-paniculata_contig3969:14069..14196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 14070..14196 +
1622930214.3877645-CDS-H-paniculata_contig3969:16188..163261622930214.3877645-CDS-H-paniculata_contig3969:16188..16326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 16189..16326 +
1691481194.2313366-CDS-H-paniculata_contig3969:16188..163261691481194.2313366-CDS-H-paniculata_contig3969:16188..16326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 16189..16326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3969.10295.1

>prot_H-paniculata_contig3969.10295.1 ID=prot_H-paniculata_contig3969.10295.1|Name=mRNA_H-paniculata_contig3969.10295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp
AAATPAVPVTRFPWEKEKEETAVSRDPVGSLGAPSRYRPDAPIPTSTEAS
AVAAAAAPFANRVTREHNQHKYWLGPTNTSISATAGVVISGDRSLSSESA
AYRTSADALIARVDDVSAPAPTAAVKRARSSTDVLREAGFGKGLRNKQSS
GRGLAEEGEEFVRGAGSEQHLFGEAFRSRVADADKLISKREEQSVLVRQL
ERELASTVSALRDERRERRGQTETLRGQLEDARSTVRDREAELERREAMA
RTLMGELEALQSRCERLVALREEQSQEADKTTSRLKEDNRELEARVREAE
ARAAEARTAREGVGSERERVTRDLGVAIAAVR*
back to top

mRNA from alignment at H-paniculata_contig3969:7985..16326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3969.10295.1 ID=mRNA_H-paniculata_contig3969.10295.1|Name=mRNA_H-paniculata_contig3969.10295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8342bp|location=Sequence derived from alignment at H-paniculata_contig3969:7985..16326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGCTACACCTGCTGTCCCCGTCACCCGCTTTCCGTGGGAAAAAGA GAAGGAGGAAACCGCGGTGAGCCGCGACCCTGTTGGCTCTCTGGGAGCGC CTTCGCGATATCGCCCCGATGCCCCCATACCGACGTCGACGGAGGCATCG GCCGTTGCTGCCGCCGCAGCACCTTTTGCCAATCGGGTCACACGCGAACA CAATCAACACAAATACTGGCTGGGTCCAACAAATACTTCGATTTCTGCCA CCGCCGGTGTTGTGATCTCCGGAGATCGGTCGTTGTCATCGGAATCTGCT GCTTACCGCACAAGTGCCGATGCTCTCATCGCTAGGGTCGATGACGTTTC TGCTCCAGCCCCCACCGCGGCTGTGAAGCGGGCCCGTTCTAGCACCGATG TACTGCGAGAGGCGGGCTTTGGAAAAGGGTTGAGGAACAAGCAGAGCAGC GGAAGGGGGTTGGCGGAGGAGGGAGAGGAATTTGTTAGAGGCGCAGGCAG TGAACAACACTTGTTCGGAGAGGCGTTTCGCAGCAGAGTGGCGGATGCGG ATAAGTTGATTTCGAAGCGGGAAGAGCAGGTATGACATACTGTGTCACAC TCTTTTGTTCTGTGTTTTCCTATTTCTTTGCGTTCCCTCCCCAGGTGCCT TAGTGTGTGTCATACTCCAGAGCGTACACACTGGGTGCGGATTATACACC AACACTTATCCTTTGGCAAACGTGTCAAGTGAAGAAAAGAAATCTGCACA AAAGGAGGTCATGCGAATAACATTTCCTCGCGTGGACAAAATTATCGCCG AAAAAAACAAGGCTTTTCATATGACCGGCACTTTTTCACATGACAAACCG TGAACTCATTCGAGGACCTGGTCATTTGAAAGGCCTTGGAAAAAGCTACT CTCATCGACGGTACGATAGGAGTACCCGCTCAGTATACCATCATTCACGG TTTGGAGACAGGATCCCCCTCCGTGCGTGTTCCTTGGCACGACCGCAGCG CACTGACAACAGTAAAACAGTTTGTCGGCTGCTTTATACACTCACTATCC ATACCCGAGGAAATCCTTTCAGCGGAGTCCTCTTGAGGGGACGTACCACC ATTACATGTTTGTTGAAGGTAACCACCGTCAGGAGTCATGTACGCTGTAG CCGTGGTTCCAACGATTCGTACAAACAAGGGGCAAAAGCAAACACACACA CACACATAATCCCTTCGTGGGCATGAAATCCTCACGATAAAATTGCCTCC GTCTAGATGTGCAGACGATAGAAAACACGCACAACCGCGGATAGTTCTCC ATTGATTTGTCTTGCGTCACCGCCATTCCCCCTGCCCTCTGCCCCCGCGC CTTATGCTTCGAACTCTAGTTAGGACCTGTTCCGTAAGAGATACGACAAG TCAGTAGCACGCATTCTGCACGTACTTGTAGCTCCGCCGCTTCCCACTTG AGTCGTTATTAACAAAACGACCACATCGGCCCTAAAATACAATTCTATTT TGGTGAATGTTACATTACCATTACTAGTGAAGGCTTTGGTGGCGTGTGTA GCTCCGAGTGTACTCCAGTGCAATTTTAATATTTTGTTTACGTGGCTTTG AGGTTTTCCCTTCAGGCATTGCCAAAGCGTTTTCTACACTTGATGCATGC AGTGGGCTAATATAAAGAGAGTTCCTTTTTGCCCGAAACGTCGTTGTGGC GATTTTAAATTCTATTGATCCTTCTTCACCGGTAATTCTGACTTGTTTTT ATCAGCTATGAGACGTTAAACGGGATGATGTCCATCTTTTTTATTCGAGA ATCTTTTTCCTTCTGACTTCTGTGTCGCCCCCTATTGATCATGATCTAGT TTACTTATGAGTATTCACAGCTGGAGTTTTGAGGCCACTTGCATGACCTC AACACGGGTACGATAGACTTAGTTAACGAGCGGTGTAGTTTTACTAATTG AGGCGCGTGGTTTGCCTTGTGATTGAGGCTGGCTTGCCAGGGGTGAATGG GATTTTCTATCTTTCTCATGCGTTCACATGAAAGTCATTTTGCTGTTCAC ATGCAGTACAAGTGATACAGAGATTTTTGCTTGCGAAGATCATAGCCCAT ATCGCGCCTGGTCGACGAGGGGAGAAAAGCCCTGGTGCTCGGTTAGTAGT TGAGGTTATGTCGTGCAGGCTGTAGTATCTATATCCTCTTGATCTACCAA TCAGCATAACCATATATATGTCAAGTCCCTTCAAAAGTCAGTCCACGGGG TGGGTATGCATAAATTTGTCGTGAAGGAGATGTGCTAGTGGTAACAGCCA GGAGAGTAAGCACTTGTTGGTGTACAGCTCTCTCAGCATAGTGTACTCCA AGGTCACACAAATGAGGTTAACTAGGCCCGAGGCTATATAGGCTAGCACT CCAAAAGACGAGTACACGATGTGTATGCGAGGACTGTACAATGAATTTTT CTTTTTCCCCTATTTGATGCCCTATATCTCATCACATGCTTTGATGGCTG TTCCACAATTTAAGCTTTTTGGTTGTGTCTCTTGGCCATGAGAAATACAC GTGAAGGGTAACAACAGTAAATATCCGACATATAAGCCGATGACACTCTC TCCCACCCCACGCCCCCCTGTTTTCTTTTCTTTTCTCTCAAAGAGTGTTT TGGTTCGGCAACTGGAACGTGAGTTGGCCTCTACAGTATCCGCCTTGAGG GACGAGCGGCGGGAGCGCAGGGGGCAGACGGAAACGCTACGTGGGCAGTT AGAGGACGCGAGGAGCACCGTTAGAGATCGAGAGGCGGAGCTGGAGAGGT GCGGGGGGCAACATTTTTTTCTTCCTTTCTTTGACCTCCAAAAATGTTGG ATGCCACTGGAAAAAAAAAGAAACTTTTTTTTGCAATTGATATTTGTACC GGACTGCATCGTCACTAACGGATGTCGTATTCCAGTGCTATCATGCTTTC TCCACTGATATTCGCCTGTGGGTGTTATCCATTGGAGATTCACGACTGGT ATTTTCGTTTCGCTTCGATATACAATCAGTACGTATCGGCCGTCTAATGA GAAACAGACATTCCTAGGGCTATGTATCGGTACCGATGCAGAAATTATAC ATGGTATATTGGTCCGATATATATATATATGTATATGGGTCGTCTTTCCG ATATGTCGATATATTTCCCTCAGAGTATGGTCATTATTCACTGGTTGTGC ACATTACTTAGTCATGCTCCAACAGCTCACAGCACCGCATGAATGATGTG GAACGGCACACCCCTTAAAGCAGCGTACCACACCCCTGAGCTCCTCTCGA CCCTAGCATGCCGATGACATAGTGCCTGGCATGCTCTCTTCTCGTTCTCG TTCCCATTAGCCCCACGAGAGTTTTGCGAACCCACAGTTTTACATTGTAA TATTTTAGTGGTCAGAAGTTCTCCTGTTCTCGATAAACAGTTCCGTCGGT TCGAGTTCAGGCTGCCTCCAGGAGGTACTTGAGATCCTCAATTTTGAAGA GAAATAAAGCCAAAACGCATATGTAATTTTCCTGCCTCCGGCGAGGCCCC GTCACCGGCCGGCGGGGGCGTTGGGGCTCGCGACAAGCCGCTCGTCTGCT CGTGCTCACGTACTCGCCTGGCGCGCTTCGCGCCGCCGGCTCGCTTCGCT CGTACCGATACATTATCGGCATCAGCCATTGTATTTGTATGCTTTCAAAT GACCAATACACATCCCCACAGATATCCGCAGGGTGATGTGAGAAGAACGC TCCGGAGGCGAAATTTTGTCGAACTCGATATTATCTAATGACTTATCTCG TTGAGATCTTTTCGACGACATAACTGTCGGTGTCACTACTAGCACCGTGG TTGAAAAAAAAATGAGGCTTGAAGAGAAATTTCCCCCGCGGCCTTCTGAC AGCGCCCTACGGTAGATAACTCCAGATAGATAGAGAGATGGATGGATGGA TGGATGGAAGTAAAAAATTAGTTGGATTTTTTGTGTTCAGTCTGGAAAAA ACACCAACTTCACAAGCTTGTGCAAAAATATGGTGAACACCTGAAAACGT TCAGCCGCTGTTTCTTTCCTCGTGAGGCTTTGTTTGTTCTACTACCGTCT GTTCTCGATCATTATCCATGCTTGATATATATATATATATATATATATAT AAATTATTTTGGTTAAATGTCGTCGAAAGCACGGGGCGGGCACAAGCTGC TAGCATCACGCTAACCTTAATTAGTACCCTTACCCCCGACTTAGGGTCAA ATGGAACCCCGGTAGCGTCTAAACCGCCCGAAACCCTGCCACGCTCTGCG GCGTTGCAGCGACCCTGGAATCTGTTTTTTGGAGAGGCCAGGGGGTACAC CACAGTATATTACTAATTAAACACTAAAAAAACGATCGTGTGAAACTCCA AACCTTTGACAGACGGCGGTAAATATCGCTGTTTCTTGTAGCCCAACTTC TCATGAGAGGGTTGATACTGTACCGCTGTCATGGAATCTGTAAAACAGAA CCAACTTTGGAGATTTTTGTCATCTCGTCTCGTCGCAGAGTGCTTGACTT GGTCGTTTCGCGCGAATATCATTCTCGACCCCCAAGTAAGGGTTAAGGGT GCCAACCAACGATAAGTCTCGTCCTGCCGAACCGGGGTGGCGCCTACACC GCAGAGAAACAAATAACTCTGATCCAAGTAAAAAAGGAAATGCAGACCCT CAGTAATCTTCCGAAGAGTGGAAGCAGCGGAAAGGGTTTTGCCTTGGCCT TCCGGGGGTTAAAAAAAAAAAAAAGTCTCGTCCTGCATACACTGCAATGA ATTTGAGGGTGCTGTACCCAATTTGAGGATACGTTTCCCGATTTTTGCTA ACAAGAGGCACCACCCTATCTTCCTCTTTTAGGCGTTGGTCGGTGTCTAT GAAGGCAAGCAGACGAGCTGCTCGTACTTACCTGGAACAAGTAACGCAAA TATGACAGAGTTGACGCGACTAACATGTTTCGGCATTATAGCCACTCCCG TAAAAGAGTCATGCTCCGAAAGTAGCCTCCCTGTGGTGGGAGGACTCTCA TGGGTGGTATGCAGGTACGGGAGCACGCACACGTGGATGATGGCTCTATT GTTAGTGGTCTGCACAAATCGCTCTCTGAGGAGGATATTTTTAGTTGAGG ACGCGAAATCGTGATGAGACTACTCGTTGACTGAGGGCTGTGTGTGTGTG TGTTTTGTTTTTTTGTTTTTTTGCATGTTGCGGAGCAGGAGCAGGCTTGA CTTTTGAAATCAGTCTGATGAAAAGGAGGGAACGGACCGGCTAGAGACAA AAGGCAACAATTTGTCGAGGCGAGCGGTGATCCTATAGTTCTAGTCATAA TCCAATCGTATCTTGTTGGTTATGTTTGTGCTGCTCGCTTGTTGTACGCC ATAGGAATGTATGTACGTACTGTGGAGGGGGGGGTCGACCATGACCTCCG GGAATTTATGAAGTGATGAATGTAATGGGGTGAAGGAGAAAAACGTAGAA ATTTACGCCGTAACGGCAAGATCCTGTCGATGGATAATGACTCTCTGCTC CGTTTCGTGATGGTAGGAAGCCAAGTCGCGGCTAACTTATCTCGTGAAAA ATCACTCAGGTGAATCTATTCCGGGAGGGTATATCTCGTCTGCGTCCAAT ACTTCACTTTATGACGTTTACCGACATACCCCCCCCCCCTGGAAACGCGG TTACCGATGCCATGTACACATATATGCCTTCAAGCTACTCATCATCTCCA TGAGGCGAACTCAGTCCATTTTCTCGTTTCTCCAGTCGTTTACTTATCTC TAACACCCTTTTGCCAAAAAAATAAAAAATAAAGAAAAGTTCAGCTCCTG CGTCGGCGACTTGATTGCTTTCACGCGATTTTTTTTTAGACGTTTGAGCA CAAGTTTTGCTTCCCACCATGGTTAGTTTTTGATAAATCCAAATGGTTGT AAAAATAACTTGGTTTAATGTTACGACAAAATTCAAATTTCCGAGGCCTG TTTAGACAAGAAATTGGTACAAAACTACTAAATTACCTCTAATTTTTATT ATTTTTTTTGCACTTCGATCATTCATGATATGCAGGCGAGAAGCGATGGC GCGAACTTTGATGGGAGAGCTGGAGGCCCTGCAATCGCGCTGTGAGCGCT TGGTTGCTTTGCGTGAGGAGCAATCGCAAGAAGCTGACAAAACAACTAGC CGTCTGAAAGAGGTACACCTCGAGCAAGCTCATGCTTTGTTTGCCCCATT GAGACTTCGGCGATCATTGTCAACGTCTCTCCCTCTGTAAATATACGTAA TGTTTGATGAGCGCCATACGACATATTTCCTTAACTTGACCACCTTCGTC AAATGCCGTCAGTTTCTAATTGTGCTACGCACCTGGTACTTGCGCCGTTT CAGAAGATCGCGTGTGCATGGTCACTGCTGTATGCTCTCGATCATGCTGT CTGTTGCGAGGTTACGGCCATGCACAGTTGTTCTTTTGTTTTATGGTTGA TGCTTCGTGGTAACCCTACGCGAGCACGAGCAACGGCGGAACCAACGGTA ATTCTACTCTAACCCCCACCTCCTAGATACACCGAGCGTCACCTAACGGC GCCGATTTGAGCAATAGACGCTTTGGGACACAAATCAAAACCACCCAGAC CAGGACCTTGTGATAATTTCTGGGGGTATCTCAACAAAACATGCTCAACT AAGAGGTGAAAAACACTACGCGATCGATAGCATATGGGCACAACTTTTGG CGCTCATAGTTTTAGTCAAACCCTATGTCGAGGGGAAAATTCGTACGTGA CCATAAAAAAAAAGCCTGCCAAGGAGAGGATAATGCTCATCAATATTTGT CATGTTCCAGGGTATACCGCAGTCAACTTTAACGTTGACGAGCGAATAGG ACTGCATGCTGTTCCCACCGCGCGATAATGATAATACAAGGCAGGCAAGA ACCGAGGTATTATTTCACTCCCATCTTCGAACCGTGGGTTCCGATAGACA ATTGAGTCTCCGTGGGAAAAAAAATAAAGAAACGGGGAGGTAAATGCCTC GATTTACAGTGGACGTACGTATATCGAGGCGAGAGTAGATTTCAAGGCGG GTCAACTTAGCTTGCCACACACTGCATATACTGTACCAATAAAAGTAACT TTATCCTTATTATGTGTTGGTCGGGTCGTGGTCGTTGTCGTGGACGTCCG TTTCGGATTCAGGAACAGCTTTTCAATACTGTACTCGGGTAATTCGTGAT GAGCGAATCTTTATGCAAGCGTAGACATCGTGAGCAACCGCGAGGGCAGC GAGTCCGTGGGTCGAGGACGAGCCAGCACTAACTAACTTGACGGATTAGC GTTACCCTGCTCATACTCGGTGAAGAGTGCTGCAATCGCGTGGATGATGA GATTGTAAAATCAAGTGGTATCTTTGGGGTGGTCCCATATACATGGAGCA CTCGGATACGGGTTACGTTTTTTTTCGGCGGTAGGTCGTTGGTTCAATTC TTGAAAGACACGTTTTTTTTTGTTTTTTTTGTTTTTTTTAATCTTCGTAA CATAGTTAGAACGGGCATATTGGTACAGAGTATACCATCGTCAATTCCAT CGTTAATGAGCGAGTGAAACTGTTGCACCCGCCACGCGATAGCAGAAGAC AGAAATGAAGGCACCACACATCCAGGCTTGCGACCGATAGGTCTCTTTCA TCGAAAAAAAACTGAAAACGTCAAACGGGCAACTGAAAGACTGGATGTAA TGAGCTCTTGGGAAGAAGGACAAAAGATAACAATATTAGCATCCTCCCAC CTTATTCAATAAGTCAGGGTACCCACCCGCTGTTCTCCATGGAGCACAAT ATTATTGTGGAATCTCTCTAGTCCCAAAGCTGAACAACTGAGCAGCGTTT CCTTGCTTCCCATGATGGATATTTTGTGTTTTGTGGTGACACATGTTTTA TCAAGCTGGTGCTTCTGTTTTGCAAAGCAGAGTTGGTAGGGCACCTATGG GGCCACCAATTGAAGCACGATTTCTCCGCTCCTGATGTTTTGATTACAGT TCCTGATGTATCGATGTGTTGATTATAGCTTGATAGTCGATTATATACAA CACAGGCATATATATATATATATATATGAATTATTTTAAGCCACCAGTGG GAGCTCACTTTTTTTCAGATTCTAACCATGGTTGTTGGGCCGCTTTTTTT ATAGGATAATCGAGAGCTAGAAGCTCGTGTACGAGAGGCAGAGGCTCGCG CGGCGGAGGCGAGGACTGCTAGAGAGGGGGTGGGCTCCGAGAGAGAGCGA GTCACGAGAGACCTGGGCGTGGCAATCGCAGCGGTAAGATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3969:7985..16326+

>mRNA_H-paniculata_contig3969.10295.1 ID=mRNA_H-paniculata_contig3969.10295.1|Name=mRNA_H-paniculata_contig3969.10295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at H-paniculata_contig3969:7985..16326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGGCTACACCTGCTGTCCCCGTCACCCGCTTTCCGTGGGAAAAAGA
GAAGGAGGAAACCGCGGTGAGCCGCGACCCTGTTGGCTCTCTGGGAGCGC
CTTCGCGATATCGCCCCGATGCCCCCATACCGACGTCGACGGAGGCATCG
GCCGTTGCTGCCGCCGCAGCACCTTTTGCCAATCGGGTCACACGCGAACA
CAATCAACACAAATACTGGCTGGGTCCAACAAATACTTCGATTTCTGCCA
CCGCCGGTGTTGTGATCTCCGGAGATCGGTCGTTGTCATCGGAATCTGCT
GCTTACCGCACAAGTGCCGATGCTCTCATCGCTAGGGTCGATGACGTTTC
TGCTCCAGCCCCCACCGCGGCTGTGAAGCGGGCCCGTTCTAGCACCGATG
TACTGCGAGAGGCGGGCTTTGGAAAAGGGTTGAGGAACAAGCAGAGCAGC
GGAAGGGGGTTGGCGGAGGAGGGAGAGGAATTTGTTAGAGGCGCAGGCAG
TGAACAACACTTGTTCGGAGAGGCGTTTCGCAGCAGAGTGGCGGATGCGG
ATAAGTTGATTTCGAAGCGGGAAGAGCAGGCGGCGGCTACACCTGCTGTC
CCCGTCACCCGCTTTCCGTGGGAAAAAGAGAAGGAGGAAACCGCGGTGAG
CCGCGACCCTGTTGGCTCTCTGGGAGCGCCTTCGCGATATCGCCCCGATG
CCCCCATACCGACGTCGACGGAGGCATCGGCCGTTGCTGCCGCCGCAGCA
CCTTTTGCCAATCGGGTCACACGCGAACACAATCAACACAAATACTGGCT
GGGTCCAACAAATACTTCGATTTCTGCCACCGCCGGTGTTGTGATCTCCG
GAGATCGGTCGTTGTCATCGGAATCTGCTGCTTACCGCACAAGTGCCGAT
GCTCTCATCGCTAGGGTCGATGACGTTTCTGCTCCAGCCCCCACCGCGGC
TGTGAAGCGGGCCCGTTCTAGCACCGATGTACTGCGAGAGGCGGGCTTTG
GAAAAGGGTTGAGGAACAAGCAGAGCAGCGGAAGGGGGTTGGCGGAGGAG
GGAGAGGAATTTGTTAGAGGCGCAGGCAGTGAACAACACTTGTTCGGAGA
GGCGTTTCGCAGCAGAGTGGCGGATGCGGATAAGTTGATTTCGAAGCGGG
AAGAGCAGAGTGTTTTGGTTCGGCAACTGGAACGTGAGTTGGCCTCTACA
GTATCCGCCTTGAGGGACGAGCGGCGGGAGCGCAGGGGGCAGACGGAAAC
GCTACGTGGGCAGTTAGAGGACGCGAGGAGCACCGTTAGAGATCGAGAGG
CGGAGCTGGAGAGAGTGTTTTGGTTCGGCAACTGGAACGTGAGTTGGCCT
CTACAGTATCCGCCTTGAGGGACGAGCGGCGGGAGCGCAGGGGGCAGACG
GAAACGCTACGTGGGCAGTTAGAGGACGCGAGGAGCACCGTTAGAGATCG
AGAGGCGGAGCTGGAGAGGCGAGAAGCGATGGCGCGAACTTTGATGGGAG
AGCTGGAGGCCCTGCAATCGCGCTGTGAGCGCTTGGTTGCTTTGCGTGAG
GAGCAATCGCAAGAAGCTGACAAAACAACTAGCCGTCTGAAAGAGGCGAG
AAGCGATGGCGCGAACTTTGATGGGAGAGCTGGAGGCCCTGCAATCGCGC
TGTGAGCGCTTGGTTGCTTTGCGTGAGGAGCAATCGCAAGAAGCTGACAA
AACAACTAGCCGTCTGAAAGAGGATAATCGAGAGCTAGAAGCTCGTGTAC
GAGAGGCAGAGGCTCGCGCGGCGGAGGCGAGGACTGCTAGAGAGGGGGTG
GGCTCCGAGAGAGAGCGAGTCACGAGAGACCTGGGCGTGGCAATCGCAGC
GGTAAGATGAGATAATCGAGAGCTAGAAGCTCGTGTACGAGAGGCAGAGG
CTCGCGCGGCGGAGGCGAGGACTGCTAGAGAGGGGGTGGGCTCCGAGAGA
GAGCGAGTCACGAGAGACCTGGGCGTGGCAATCGCAGCGGTAAGATGA
back to top