mRNA_H-paniculata_contig3942.10248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3942.10248.1
Unique NamemRNA_H-paniculata_contig3942.10248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 1.060e-86
Identity = 261/584 (44.69%), Postives = 299/584 (51.20%), Query Frame = 2 
Query:   32 GPRAGTAAWARWASKVALEGLQEGREATRSLMVAIEMCQRASPPA-GVNAGPSASRAGAPSRQGTGAAGXXXXXXXXXXXXXXXXXXXXAAGQTAPPVSKPSEDFDDDGDLDLSASLWFQTLDKILSAKGAVSRG-----------------------EQPAGAGGGR---SXXXXXXXXXGGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESFKSVVRKRHTLKGAGVRVSSVAGRDLPTPRLPTPVKSTATTTLADPKDVPPSGGDALDTLGDGRSVGLAYGNMPSASAXXXXXXXXXXXXXAGLLEAVGMGVISVSPGGVALIEQLGRGAAPAGDLASGSIRHGEFGQSLSAPAGDRGAVADDGGESEASADRQ---------ETSTSLWRLRAARRRRKARGDKMRALVTWAAS-------GQAGDKSRVDGVGSGVPDPFARDVGRAVT----------------SGRVMESGGRSEKEANLADPAMAEAA-----------SRAGGLGVGWGVKFQAHAARAIPASFLTKR 1573
            GPRAGTAAWARWASKVALEGLQEGREATRSLMVAIEMCQRASP + G + G  ++R  + +R  + A  XXXXXXXXXXXX                 S  ++DFDDDG+LDLSASLWFQTLDKILSAKGA  R                          PA +  G    +          GELPQTAAVMGGVLDALLQRTLSSMAGYVPLP +VKKV+SDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFES ++VVR+RHTLKGAGVRVS+V G DL  PR+                                RS+   +  +PS                 GLL A+G GVI VS  GVA++E LGRG                                                      + S SLWRLRAARRRR+ARGDKMR+L  W+A        G  G+++R    G+    P     G  V+                +GRV + G                                G   +GWG   QA AA A+PASFLTKR
Sbjct: 2064 GPRAGTAAWARWASKVALEGLQEGREATRSLMVAIEMCQRASPSSSGGSVGSMSARRASGARHRSTAGXXXXXXXXXXXXXR----------------SPLADDFDDDGELDLSASLWFQTLDKILSAKGAACRSGPXXXXXXXXXXXXXXXXXXXXXADPAASVPGXXXXAVAPGRGREAAGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIAAXXXXXX---XXXXXXXXXXXXXXXXXXXXXRSLAPHHPPVPS-----------------GLLGALGSGVIRVSSAGVAVVEHLGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASASLWRLRAARRRRQARGDKMRSLARWSAGEDTGPIRGDGGERAR----GTIGHIPVMTRGGSKVSGRSGXXXXXXXLGRDENGRVHQRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRGRQPLGWGSALQARAALALPASFLTKR 2607
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: D8LRX1_ECTSI (Vps8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX1_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 8.250e-57
Identity = 163/382 (42.67%), Postives = 188/382 (49.21%), Query Frame = 2 
Query:  524 MGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESFKSVVRKRHTLKGAGVRVSSVAGRDLPTPRLPTPVKSTATTTLADPKDVPPSGGDALDTLGDGRSVGLAYGNMPSASAXXXXXXXXXXXXXAGLLEAVGMGVISVSPGGVALIEQLGRGAAPAGDLASGSIR-HGEFGQSLSAPAGDRGAVADDGGESEASADRQETSTSLWRLRAARRRRKARGDKMRALVTWAAS-------GQAGDKSR-----VDGVGSGVPDPFARDVGRAVT-------SGRVMESGGRSEKEANLADPAMAEAA------------SRAGGLGVGWGVKFQAHAARAIPASFLTKR 1573
            MGGVLDALLQRTLSSMAGYVPLP +VKKV+SDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFES ++VVR+RHTLKGAGVRVS+V G DL  PR+      T T   +                                  XXX          +GLL AVG GVISVS GGVA++E LGRG          +                                     S SLWRLRAARRRR+A+GDKMR+L  W+A        G  GD++R     +  +  G      R+ G           +GRV + GG                                G   +GWG   QA AA A+PASFL KR
Sbjct:    1 MGGVLDALLQRTLSSMAGYVPLPAIVKKVVSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESLRTVVRERHTLKGAGVRVSAVGGFDLHPPRIAAADGPTRTRNASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLALHHPPVPSGLLGAVGSGVISVSSGGVAVVEHLGRGXXXXXXXXXXNDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASASLWRLRAARRRRQAKGDKMRSLARWSAGEDTGPTRGDGGDRARGTIGHIPVMNRGGTKVSGRNGGGVXXXXXXXDENGRVHQRGGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRGRQALGWGSALQARAALALPASFLAKR 382
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A7S2GX04_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX04_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.460e-18
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 2 
Query:  374 SLWFQTLDKILSAKGAVSRGEQPAGAGGGRSXXXXXXXXXGGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESFKSVVRKRHTLKGAGVRVSSV 793
            +LWF  LD+++  K  +   +                     ELPQ   ++  VL  ++QRTL  M+ +VPLP +V+K+  DH+G  LGE R ++L+MLDTY+Y+T I+RTA SL+    + + ++R  LK +GV +  +
Sbjct:  394 ALWFLMLDRLVGMKSLLHLNQ---------------------ELPQHQTILEAVLTEMIQRTLDKMSAFVPLPRIVRKITDDHSGMELGELRDILLSMLDTYTYETNIYRTAVSLVATDLRRLCKRRQRLKCSGVSIRHI 512
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BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A836CF74_9STRA (Golgi CORVET complex core vacuolar protein 8-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF74_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.280e-13
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  539 DALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFESFKSVVRKRHTLKGAGVRVSSVAGRDL 808
            D LLQR L  M GYVPLP +V KVLSDHA + LGEF+ +I +ML   S +T ++R AA LLF   +     R  L  AGVRV ++ GR L
Sbjct: 1073 DILLQRLLEGMTGYVPLPAIVGKVLSDHAQAPLGEFKGLIQSMLVACSRETDVYRAAAVLLFGCAQRARAARRRLARAGVRVCAIDGRGL 1162
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A6P5GI92_ANACO (vacuolar protein sorting-associated protein 8 homolog n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GI92_ANACO)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-6
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 2 
Query:  368 SASLWFQTLD-------KILSAKGAVSR---GEQPAGAGGGRSXXXXXXXXXGGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTA 709
            S SLWF+ LD       +    K    R   G+ PA  G   +          G   + AAV+  V    +   +  MAGY+PLPV++ KVLSD+     G+F+ +IL ML TY Y+  I  TA
Sbjct: 1567 SESLWFRLLDSFSEPLKRFCGGKDIPERSQVGKVPAICGDRVNEFKFRRLSENG---RCAAVLRRVFSQFVGEIIEGMAGYIPLPVIMTKVLSDNGDQEFGDFKLIILRMLGTYGYEKRILDTA 1687
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A0A9D9K0_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D9K0_ARUDO)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-6
Identity = 42/139 (30.22%), Postives = 62/139 (44.60%), Query Frame = 2 
Query:  356 DLDLSASLWFQTLD-----------------KILSAKGAVSRGEQPAGAGGGRSXXXXXXXXXGGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLL 721
            D + S SLWFQ LD                 K   +KG+ +  EQP G G  +                 +  +G +++A        MAGY+PLP ++ K+LSD+     G+F+ VI  ML  Y Y+  I  TA S++
Sbjct:   26 DPEESQSLWFQLLDSFSEPLKKLYGSKDVNEKCAQSKGSETPNEQPKGKGLSQVRISAKQSCLNALRKIFSQFVGEIIEA--------MAGYIPLPAIMAKLLSDNGSQEFGDFKLVIHRMLSMYLYEKRILETAKSVI 156
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BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A6I9QH23_ELAGV (vacuolar protein sorting-associated protein 8 homolog isoform X1 n=8 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QH23_ELAGV)

HSP 1 Score: 62.0 bits (149), Expect = 4.070e-6
Identity = 38/124 (30.65%), Postives = 58/124 (46.77%), Query Frame = 2 
Query:  368 SASLWFQTLDKILSAKGAVSR------GEQPAGAGGGRSXXXXXXXXXGGELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLL 721
            S SLWF+ LD   + + + S       G +    G  +S              +   ++  V    +   +  MAG+VPLPV++ K+LSD+     G+F+  IL ML TY Y+  I  TA SL+
Sbjct: 1602 SESLWFRLLDSTTNFRSSFSEPLKRFYGNKEVSEG--QSCVGSSPAISDMGYKKCTGILRRVFSQFVGEIIEGMAGFVPLPVIMGKLLSDNGNQEFGDFKFTILKMLGTYGYERRILDTAKSLI 1723
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A388JYZ1_CHABU (Vps8 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JYZ1_CHABU)

HSP 1 Score: 61.6 bits (148), Expect = 5.650e-6
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 2 
Query:  524 MGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASL----LFESFKSVVRKRHTLKGAGVRVSSVAGRDL 808
            M  +L  ++ + +S M GYVPLPV++ K++S H     GEF+  IL +L TY ++ +I +TA +L     F S  ++ R R    G       V  R+L
Sbjct: 2718 MRTLLVGMMGKVMSGMVGYVPLPVLLSKIVSQHGSDQFGEFKATILGLLGTYGFERSILKTAKNLQDGDAFASMHALKRGRTQALGPKSLTCCVCKRNL 2816
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A7S4HKN1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HKN1_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 7.330e-6
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2 
Query:  500 ELPQTAAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLFES 730
            +L   AA +  V +  L + L+SM GYVPL V+++K++ DH+ +   +F+ +ILAMLDT  Y+  I   AA  LF+S
Sbjct:    8 KLSPGAAFVTRVFNDCLAKILNSMMGYVPLRVIMEKIVRDHSTAPFSDFKPMILAMLDTNHYEQNILE-AAKRLFDS 83
[Close]
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Match: A0A2I0AWR9_9ASPA (RING-type domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWR9_9ASPA)

HSP 1 Score: 60.8 bits (146), Expect = 9.200e-6
Identity = 41/132 (31.06%), Postives = 58/132 (43.94%), Query Frame = 2 
Query:  368 SASLWFQTLD-------KILSAKGAVSRGEQPAGAGGGRSXXXXXXXXXGGELPQT-------AAVMGGVLDALLQRTLSSMAGYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLL 721
            S SLWF+  D       +  S KG   R         G             E+P T       A ++  +   L+   +  M GY+PLP V+ K+LSD+     G+F+  IL ML TY+Y+  I  TA SL+
Sbjct: 1636 SESLWFRLFDFFSEPLKRFCSGKGFPERKNNV-----GHMTASSNASVYMDEIPSTWKFLKSSAHILRRLFSQLIGEIIEGMTGYLPLPAVMAKLLSDNGNQEFGDFKFTILKMLGTYNYERRILDTAKSLI 1762
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3942.10248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE1.060e-8644.69Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX1_ECTSI8.250e-5742.67Vps8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A7S2GX04_9STRA2.460e-1835.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A836CF74_9STRA8.280e-1351.11Golgi CORVET complex core vacuolar protein 8-domai... [more]
A0A6P5GI92_ANACO1.370e-634.68vacuolar protein sorting-associated protein 8 homo... [more]
A0A0A9D9K0_ARUDO3.760e-630.22RING-type domain-containing protein n=1 Tax=Arundo... [more]
A0A6I9QH23_ELAGV4.070e-630.65vacuolar protein sorting-associated protein 8 homo... [more]
A0A388JYZ1_CHABU5.650e-634.34Vps8 domain-containing protein n=1 Tax=Chara braun... [more]
A0A7S4HKN1_9EUKA7.330e-641.56Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A2I0AWR9_9ASPA9.200e-631.06RING-type domain-containing protein n=1 Tax=Aposta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3942contigH-paniculata_contig3942:10083..16453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2850.Phatr43103
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.Golgi CORVET complex core vacuolar protein 8
EggNOG OGs2XA8E@2836,KOG2079@1,KOG2079@2759
Ec32 ortholog descriptionVps8
Ec32 orthologEc-08_002750.1
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size2030
Cds size1455
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.5866761-UTR-H-paniculata_contig3942:10082..101821622930208.5866761-UTR-H-paniculata_contig3942:10082..10182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 10083..10182 +
1691481191.5053816-UTR-H-paniculata_contig3942:10082..101821691481191.5053816-UTR-H-paniculata_contig3942:10082..10182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 10083..10182 +
1622930208.6024325-UTR-H-paniculata_contig3942:12505..125291622930208.6024325-UTR-H-paniculata_contig3942:12505..12529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 12506..12529 +
1691481191.5177355-UTR-H-paniculata_contig3942:12505..125291691481191.5177355-UTR-H-paniculata_contig3942:12505..12529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 12506..12529 +
1622930208.6972573-UTR-H-paniculata_contig3942:16002..164531622930208.6972573-UTR-H-paniculata_contig3942:16002..16453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 16003..16453 +
1691481191.568781-UTR-H-paniculata_contig3942:16002..164531691481191.568781-UTR-H-paniculata_contig3942:16002..16453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3942 16003..16453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930208.623126-CDS-H-paniculata_contig3942:12529..126761622930208.623126-CDS-H-paniculata_contig3942:12529..12676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 12530..12676 +
1691481191.527239-CDS-H-paniculata_contig3942:12529..126761691481191.527239-CDS-H-paniculata_contig3942:12529..12676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 12530..12676 +
1622930208.6375577-CDS-H-paniculata_contig3942:13200..135041622930208.6375577-CDS-H-paniculata_contig3942:13200..13504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 13201..13504 +
1691481191.5364828-CDS-H-paniculata_contig3942:13200..135041691481191.5364828-CDS-H-paniculata_contig3942:13200..13504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 13201..13504 +
1622930208.6536162-CDS-H-paniculata_contig3942:14564..146911622930208.6536162-CDS-H-paniculata_contig3942:14564..14691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 14565..14691 +
1691481191.5455034-CDS-H-paniculata_contig3942:14564..146911691481191.5455034-CDS-H-paniculata_contig3942:14564..14691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 14565..14691 +
1622930208.6799943-CDS-H-paniculata_contig3942:15125..160021622930208.6799943-CDS-H-paniculata_contig3942:15125..16002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 15126..16002 +
1691481191.555482-CDS-H-paniculata_contig3942:15125..160021691481191.555482-CDS-H-paniculata_contig3942:15125..16002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3942 15126..16002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3942.10248.1prot_H-paniculata_contig3942.10248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3942 12530..16002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3942.10248.1

>prot_H-paniculata_contig3942.10248.1 ID=prot_H-paniculata_contig3942.10248.1|Name=mRNA_H-paniculata_contig3942.10248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=485bp
MVAIEMCQRASPPAGVNAGPSASRAGAPSRQGTGAAGGSAGRAGSAEAEA
QGRDGGKAAGQTAPPVSKPSEDFDDDGDLDLSASLWFQTLDKILSAKGAV
SRGEQPAGAGGGRSVGGGGRRRRGGELPQTAAVMGGVLDALLQRTLSSMA
GYVPLPVVVKKVLSDHAGSSLGEFRHVILAMLDTYSYDTAIHRTAASLLF
ESFKSVVRKRHTLKGAGVRVSSVAGRDLPTPRLPTPVKSTATTTLADPKD
VPPSGGDALDTLGDGRSVGLAYGNMPSASAAAAVVAFSPPPPPAGLLEAV
GMGVISVSPGGVALIEQLGRGAAPAGDLASGSIRHGEFGQSLSAPAGDRG
AVADDGGESEASADRQETSTSLWRLRAARRRRKARGDKMRALVTWAASGQ
AGDKSRVDGVGSGVPDPFARDVGRAVTSGRVMESGGRSEKEANLADPAMA
EAASRAGGLGVGWGVKFQAHAARAIPASFLTKRL*
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mRNA from alignment at H-paniculata_contig3942:10083..16453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3942.10248.1 ID=mRNA_H-paniculata_contig3942.10248.1|Name=mRNA_H-paniculata_contig3942.10248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6371bp|location=Sequence derived from alignment at H-paniculata_contig3942:10083..16453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGGGATTGGGGGCGGTGGCACTAGCGGCGGTCCCAGAGCGGGGACTG
CGGCATGGGCGAGATGGGCGAGCAAGGTGGCGCTTGAAGGGTTGCAGGAG
GTGAGTGAGTTGGAGCGATAATGGGAAATGTGTAGGGCTCTGCACTGGTA
CGCTATATAGCGCAGCACTGCTGGTATTGGCAGTATACTGGTACTGGTTG
AGACGGTTGGCAGTATTCCGTTTATTGAGGATCCACGTACGTCCTCATGA
AAACGCCACATTAGTTGGAAACCCTCTATTGGTTATTTTTCAATGACCCT
GAGCTAAGCCTACAGCCCCGCACAGCGCTGCAGGGGTATGCAGAGGAGGT
TAAGACTTGCCCAGCACCGTTTCGGGTTCCGCAAGGGGGACGAGTGAAAA
TTGATCGCCGTTACCCAACCATAAAAATACAAATTATTCGTTTTTGTGTT
GTTTTTGCGATCGATTGACACTCGTTCTCGCTGTCACTCTGACAAGGTTT
GGCACTCAATTTTGAAGAGAGATAAAGCTAAAACGCGCATGTTTTCTGTC
TCCGGCGGAGCCTCCGGCGCCCTGGCTTTTCGCACTTTTCCTCACCGCGA
TCGAGGGGTGGGCAACACGTGGACGGACTCGAGAAGCTCGTGACGTTAGT
GTTCCAACGACACTTGATATGGACTGTAGTTTGCGCCCCACAGGGTTTAC
GAAAACCACAACAAAGGGGTGATGACGTTTAATATTTGGTTATTATCCAT
CGTAGATTCAACTATATTTTGTAATACAAAGTTGTTTGTGTTTTAAAGCT
GTTGAAAAAGCGTTAAAATACATGCCAGACAGCGGAAATGCGATCGGGCA
TATTTGGAGGACCTAAATTGCTGCAGCTCCGGGGTGGAACGCAGCCACCG
GAGGATCCGTGATGCATATAATCTCTCCCCATAGAAAAGTCAATACGCGA
AAATGGTCGAGCACCGACAAACGGTCCAATTTTCATGTAATTTCCCAGAG
CTTGAAGCGAAAAGCTTTCAGAATTACCGAAGGGAAAATTTAGGGCAATT
GTAGTATTTGTACGAGGCAAGGATTATCAAGATATGTTATATTCCATGAA
ATTGGCAACTCCTCTTTGATCACAAGATGCGGTCCTAAAGTTGCAGCCTA
TCTCCTACCACTTCCGTCACGTTAGTGTGTTCAGCACCGAGAGCGATGGT
GTTCGCTGCTGTCGGATATGCGTATGCCGTGGGGTGAATACTTGCAATCT
AGGGCGGAAGGAAGCAAGTACCGCATATATCCACGATTTATAGGTTTGAA
AGAACAGTGCGGGTCAGAGAAAATCTATTGTGTTCTAAAGTGTCAAACCA
GTCAAATCTTACGTCGATGTTTGACCTTGGTGCTGCACATGGGCGTCTTA
TACGCGAAGTCACCGAAATCCCAGAATCAAGTGCCGCTGCTTCGTGCACC
CTTCTGAATCAGCCAACCGGGCACCTGGTAATGTTTTACATGTTATTTGA
CTTGCATGTGGGTGACCATGCCAATTAAACGCGCTTCGAGGCTACGTATC
CACCCTTCTATTTTCGACTATTTCCCTCTGATATTGTACAAGTCGATACA
GTTCCGTTTATCCTAACAGTTTTGGCGTGATGAGCGCTTTGAAGTAAGTC
ATGATCTAAAGATATATTTTATTGACGGGACAACAGATATCTGAGATGCA
CCTTGAAAAGCGAAATACCCACAGCGCACGCATCCCCCCCCTTTGTTGTC
AACTGGTGTCGATAAGCATACTCAGCTGTCAACATAAGCTGCATAATATA
TAACCCCTTACTGATCCAATTTTGATGGTGAGTGCACACAGCTACAGTTT
GAGGTCATGTGCATCACCTCAACACGGGGTGTACAACGGAGTGTTATTAT
TCGAGCGTTAGGGCTTAGTTCTACGTACTACATGTGGCAGGTGGGTTGAC
GTAAGGACAAGAACCCTGGTGGGTGAAAAGCAATACCCACCACAGTGATT
CAGTGTTGCTGATGAGCGCACAAAAGTGAGTTAAAAAAACCCAGCTTGCA
TGACCTCAACGTGAGTACGGAGTTTATTGTGTGAGCTTCAGAGCTGTAGT
TTAACTGACTCTGGGCATAGTTGGACTTAGGAAAGAATTTTCTCGAGGGT
GTCAGTTTGTCGTTCATGTGAGAGCTATTTCTTGTTTCACCAACAGTACA
CATGCTAGTCATATGATGATAATTTTTTCCTTGTGAAGGTTGAAGGTTGC
CCTAGCCCATGTCGTGCGTGGTCGAAGTGGTGCGTGAAGTCCTAGTACTT
GGTCATGATGGGTCCCCCCCTCCCTCCTGTTCCCTCTCCCCGATCATCTC
TCCCGCTGCCGCCACCGTCGCCCCTCTCCGCTCGCGCGTTTACCCGCATC
GCATTTCCTGTTTTCGTTGCCAGGGTCGCGAAGCAACCCGTAGTCTGATG
GTCGCGATCGAGATGTGCCAGCGGGCCTCCCCACCCGCTGGGGTCAATGC
AGGCCCGAGTGCGTCTCGAGCTGGTGCTCCTTCGCGACAAGGGACGGGGG
CGGCGGGTGGGTCTGCAGGAAGAGCTGGTAGTGCAGAGGCAGAGGTGCGT
ACGTCTGTATCTTGTTTTTCACGAGGAAACAGGAAAAACTGTTCATGCCC
TCGCCCACCCGCCCGCCCGCCAGCCCGCCCGCGCGTGTGCCGTGTGGGTG
CCGTGTGGGTGCGGTCCGCGCGTACTTGAGTTTCTTCTTTTTGTGTGTGC
TTCTGCTGCATGACGTTTTGGATCACGTCTGCTGGTGTTCATTATTGCCT
TCGTTTTGTGAAGACCCCTTAGCGGGTTTTTCAGCAAGAGGCAACCCAAA
CACAGCTACAAGTTGAATCCGCCCCCGCGTGATTTTTGGCGTTTGTTACT
CTACTGTCTTGCTGCAGCTCGAGTGGAACACAGCAAGCTCAACTTGTTTC
TGGTTTCTTCCCCTCTTCTCTGCTGCTGGTCGCCCGCTCCTCAATGAGCT
GTTTAGCGCTCGAAACTTCGCTCACTTGCTAATCACAGCGCTAGCGATAC
ATCCATGTGCCCGAGAGTTCACACGAAAATCTATTCCAACGCGAACTCTA
CCCACACACCTCATTCAGGCCCAAGGAAGAGACGGGGGCAAAGCTGCCGG
TCAGACAGCGCCCCCCGTCAGCAAACCGTCAGAAGACTTCGACGATGACG
GCGATCTTGACCTCAGCGCAAGCCTGTGGTTCCAGACTCTAGACAAGATT
CTCAGCGCCAAGGGGGCTGTGTCGCGCGGGGAGCAGCCGGCGGGAGCCGG
CGGAGGAAGGAGTGTGGGTGGCGGGGGCAGGCGTAGACGAGGGGGCGAGC
TACCACAGACGGCGGCAGTGATGGGTGGAGTGCTCGATGCTTTGCTGCAG
CGTACGCTGAGCAGCATGGCAGGCGAGATGAAATATTGAGTGAAATTGCT
GTGCAGTAAGCGTCCCTTGGGTCTCCACCGGCGCGTGTGCATTTTCTTCT
GTTTGGTTCGCGGACATTGTCGACCCTGATACGAAATGGAATAAATGACT
CAGTTGCCAATCTGAAAAGTAACACCCGGAAATCGTGTGTGGTCGGGAGG
TCGTGCATCCATTGTTTGGTAGTGCAGAGTGCCACGTACCGACCGCCCCA
AGGTTTTTTTGCCAAGTTTGGAAGTCGCCATCACGATGTTGCAAGAGGGA
CAGTACGGCGAGACTGAGCTCGTCGGAACGGTTCAGCGTTACGCAACTAG
TTATTGTCCAGGAAACCTGAACGCCAAGCTCGGTGCGACAAGGCTCTGTC
GAGCACGACGAATTGCCCCCATGTGGTACGTTTCCTTGTGTACCCTGCTC
CGCTGTGACCGGAGCTATCACGGTACGATCTGAACGAGCGAACGAAGAAG
TATGTAGCGACAGCTTCGCTCGCTGGCCGCTCGTTTTGGAAGGTGCTCAA
CGCGCATCTTATGATAATACGGTCAACACTCATGGCAAACTCTGGCTGTT
TTGCCTTGGTTGAATCTCTCTCTCTCTCTAAATAGATATGTATGCGTTAT
CCCACCCGCTTCGGATCCAGACTTCCGTGTTTTCAGAGCCCTCGGACGAC
ATCCCCATGTAACGCCGATCCAGCCGGCGCAGGCCCCTCTGCTATAACTA
GACGAACCGTTGTTGTAAGAATGAAGCCTTAGCACCAAAACCCAAAGCGG
CACGGCTAAAGTTTAGTAGTAGGTATATCTGTTCGGTTGTAGGTATGGTA
ATGCATGTCATGCCAGGTATCTTCGAACACTAACATGCTTCACGATGAAC
AAGTTCTTGTAAAATAGTAGCGTGACGCTAACTTGACTTCGCCTAGTTTG
TTTTTTTATCCTTAACCATGGTTTAAGTGGTCACCCTCAATCAAGTTCGT
GGCAATACCGCCACCCCTCCGCCGCGCCCCCCTGGGGTGCGTGTGCCCTC
GTGTTGGTCAATCCTGCATGGTCGCATTTCAGGTTATGTGCCGCTACCGG
TGGTCGTAAAGAAGGTGCTTAGCGACCATGCCGGCAGCAGTCTTGGCGAG
TTCCGGCACGTCATCCTTGCGATGCTTGACACGTATTCGTATGACACGGC
AATCCACAGGTACGCGGTCTTGGGGGAAATTCGGAAAGCTGGACGTAAAA
AGAAACGTCAGACAAATGAGCTGTTATCCGGCGTCGTTGCTGCCTTTCTG
CAGTAAAAGCGTGCCCTACAATGTTCAGTCGAAAAATAACACGTCGTAGC
AGTGTCGTTTCAAGCGAGCGCAATGTAGACATGTTTTTTTGCGTGTCTGG
TTCCTCAGTACGGTTTTGACAGTGTGCTCTGGCTAACTTGATTTCAGGAC
AATTACTTATTTTTGCGAAGATGCTCTTGATACACTGTCTTTTTTTTCTT
TTGCGGCTGCCAAGATTCAGCCCATCTGGTTTATTTTTTCGATAGCACTA
CTCTTCACGATTCCCTCTTCCCCGCGGTTAATCGCACGTATGTCTACGGA
CTGAGTGTCTCATTCACGATGTCATGTCGCTTTTTATGATTAGGACCGCG
GCATCTTTGCTCTTCGAGAGCTTCAAAAGCGTCGTGCGCAAGCGACATAC
CCTCAAGGGCGCCGGCGTACGAGTAAGCTCCGTCGCCGGACGGGATCTAC
CCACGCCCCGTTTACCCACGCCCGTCAAATCCACCGCGACCACCACGCTG
GCCGACCCCAAGGACGTACCCCCATCAGGGGGTGACGCATTGGACACCCT
TGGAGACGGTCGATCAGTAGGCCTTGCCTACGGCAACATGCCCTCGGCGT
CGGCGGCGGCAGCGGTAGTGGCGTTTTCGCCTCCGCCGCCCCCCGCGGGC
CTGCTCGAGGCAGTAGGGATGGGAGTGATTAGCGTCTCTCCGGGGGGCGT
AGCGCTGATTGAACAGTTGGGACGCGGAGCGGCTCCCGCAGGCGACTTGG
CCAGCGGTTCGATCCGTCATGGAGAATTCGGACAGAGCCTGTCCGCACCA
GCGGGAGATAGGGGTGCCGTTGCAGATGACGGGGGTGAAAGTGAGGCGTC
GGCAGACCGGCAGGAAACATCCACGTCGCTATGGAGGTTGCGGGCGGCGC
GACGCCGCAGGAAAGCGAGAGGCGATAAGATGCGGGCCTTGGTTACTTGG
GCCGCCAGCGGTCAGGCTGGAGACAAGAGTCGGGTAGACGGCGTCGGTTC
TGGTGTTCCAGACCCCTTCGCCCGTGATGTCGGTCGAGCGGTTACAAGCG
GCAGAGTGATGGAGTCCGGGGGCAGGTCAGAGAAAGAGGCCAACCTAGCG
GACCCGGCGATGGCGGAGGCGGCGAGCAGGGCGGGAGGGCTAGGCGTGGG
TTGGGGGGTGAAGTTCCAGGCCCATGCGGCGCGCGCAATTCCGGCCAGTT
TCTTGACGAAACGACTCTGATCGTAGTTGTTGCTGCGTTGTACTCTATGC
TGTATGTTGTCGACGTGCCACATGGCAGGTATTTGTATAGCACTTGGTAG
CCGAGGTTTCGATTGCCGCCTTGCGTGCGGAACGGCGACTTGACCACCGA
ACCTCAGGGTTCTGACAAGGAAAAATATTCCAGCGCAAGGTAAATTCAAG
CCATCTCGATCGGTGTCCTGGTATTTTTGCCAAGTTTGGCTGCGGAGTAC
TTCGGGTCGCACACATCCTGTGTTACAGTGGCGCAGGAACAGTAGTCCCT
GAATAAATGTTGGACTCGTTCGCCTGTGTTTTGGCCATGGCTCTCAGGAT
CTTGGCGTTTTATTGTACTCCTATGTTTTTTTTTCGTTACAAAATACTCT
CTTTTGTTGTATGTTGTTTGGAGACCGGCCTAGACTCCTTTGCTTACGCA
ACCCTGATGGGCTCTTTCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig3942:10083..16453+

>mRNA_H-paniculata_contig3942.10248.1 ID=mRNA_H-paniculata_contig3942.10248.1|Name=mRNA_H-paniculata_contig3942.10248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at H-paniculata_contig3942:10083..16453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGCGATCGAGATGTGCCAGCGGGCCTCCCCACCCGCTGGGGTCAA
TGCAGGCCCGAGTGCGTCTCGAGCTGGTGCTCCTTCGCGACAAGGGACGG
GGGCGGCGGGTGGGTCTGCAGGAAGAGCTGGTAGTGCAGAGGCAGAGATG
GTCGCGATCGAGATGTGCCAGCGGGCCTCCCCACCCGCTGGGGTCAATGC
AGGCCCGAGTGCGTCTCGAGCTGGTGCTCCTTCGCGACAAGGGACGGGGG
CGGCGGGTGGGTCTGCAGGAAGAGCTGGTAGTGCAGAGGCAGAGGCCCAA
GGAAGAGACGGGGGCAAAGCTGCCGGTCAGACAGCGCCCCCCGTCAGCAA
ACCGTCAGAAGACTTCGACGATGACGGCGATCTTGACCTCAGCGCAAGCC
TGTGGTTCCAGACTCTAGACAAGATTCTCAGCGCCAAGGGGGCTGTGTCG
CGCGGGGAGCAGCCGGCGGGAGCCGGCGGAGGAAGGAGTGTGGGTGGCGG
GGGCAGGCGTAGACGAGGGGGCGAGCTACCACAGACGGCGGCAGTGATGG
GTGGAGTGCTCGATGCTTTGCTGCAGCGTACGCTGAGCAGCATGGCAGGC
CCAAGGAAGAGACGGGGGCAAAGCTGCCGGTCAGACAGCGCCCCCCGTCA
GCAAACCGTCAGAAGACTTCGACGATGACGGCGATCTTGACCTCAGCGCA
AGCCTGTGGTTCCAGACTCTAGACAAGATTCTCAGCGCCAAGGGGGCTGT
GTCGCGCGGGGAGCAGCCGGCGGGAGCCGGCGGAGGAAGGAGTGTGGGTG
GCGGGGGCAGGCGTAGACGAGGGGGCGAGCTACCACAGACGGCGGCAGTG
ATGGGTGGAGTGCTCGATGCTTTGCTGCAGCGTACGCTGAGCAGCATGGC
AGGTTATGTGCCGCTACCGGTGGTCGTAAAGAAGGTGCTTAGCGACCATG
CCGGCAGCAGTCTTGGCGAGTTCCGGCACGTCATCCTTGCGATGCTTGAC
ACGTATTCGTATGACACGGCAATCCACAGGTTATGTGCCGCTACCGGTGG
TCGTAAAGAAGGTGCTTAGCGACCATGCCGGCAGCAGTCTTGGCGAGTTC
CGGCACGTCATCCTTGCGATGCTTGACACGTATTCGTATGACACGGCAAT
CCACAGGACCGCGGCATCTTTGCTCTTCGAGAGCTTCAAAAGCGTCGTGC
GCAAGCGACATACCCTCAAGGGCGCCGGCGTACGAGTAAGCTCCGTCGCC
GGACGGGATCTACCCACGCCCCGTTTACCCACGCCCGTCAAATCCACCGC
GACCACCACGCTGGCCGACCCCAAGGACGTACCCCCATCAGGGGGTGACG
CATTGGACACCCTTGGAGACGGTCGATCAGTAGGCCTTGCCTACGGCAAC
ATGCCCTCGGCGTCGGCGGCGGCAGCGGTAGTGGCGTTTTCGCCTCCGCC
GCCCCCCGCGGGCCTGCTCGAGGCAGTAGGGATGGGAGTGATTAGCGTCT
CTCCGGGGGGCGTAGCGCTGATTGAACAGTTGGGACGCGGAGCGGCTCCC
GCAGGCGACTTGGCCAGCGGTTCGATCCGTCATGGAGAATTCGGACAGAG
CCTGTCCGCACCAGCGGGAGATAGGGGTGCCGTTGCAGATGACGGGGGTG
AAAGTGAGGCGTCGGCAGACCGGCAGGAAACATCCACGTCGCTATGGAGG
TTGCGGGCGGCGCGACGCCGCAGGAAAGCGAGAGGCGATAAGATGCGGGC
CTTGGTTACTTGGGCCGCCAGCGGTCAGGCTGGAGACAAGAGTCGGGTAG
ACGGCGTCGGTTCTGGTGTTCCAGACCCCTTCGCCCGTGATGTCGGTCGA
GCGGTTACAAGCGGCAGAGTGATGGAGTCCGGGGGCAGGTCAGAGAAAGA
GGCCAACCTAGCGGACCCGGCGATGGCGGAGGCGGCGAGCAGGGCGGGAG
GGCTAGGCGTGGGTTGGGGGGTGAAGTTCCAGGCCCATGCGGCGCGCGCA
ATTCCGGCCAGTTTCTTGACGAAACGACTCTGAGACCGCGGCATCTTTGC
TCTTCGAGAGCTTCAAAAGCGTCGTGCGCAAGCGACATACCCTCAAGGGC
GCCGGCGTACGAGTAAGCTCCGTCGCCGGACGGGATCTACCCACGCCCCG
TTTACCCACGCCCGTCAAATCCACCGCGACCACCACGCTGGCCGACCCCA
AGGACGTACCCCCATCAGGGGGTGACGCATTGGACACCCTTGGAGACGGT
CGATCAGTAGGCCTTGCCTACGGCAACATGCCCTCGGCGTCGGCGGCGGC
AGCGGTAGTGGCGTTTTCGCCTCCGCCGCCCCCCGCGGGCCTGCTCGAGG
CAGTAGGGATGGGAGTGATTAGCGTCTCTCCGGGGGGCGTAGCGCTGATT
GAACAGTTGGGACGCGGAGCGGCTCCCGCAGGCGACTTGGCCAGCGGTTC
GATCCGTCATGGAGAATTCGGACAGAGCCTGTCCGCACCAGCGGGAGATA
GGGGTGCCGTTGCAGATGACGGGGGTGAAAGTGAGGCGTCGGCAGACCGG
CAGGAAACATCCACGTCGCTATGGAGGTTGCGGGCGGCGCGACGCCGCAG
GAAAGCGAGAGGCGATAAGATGCGGGCCTTGGTTACTTGGGCCGCCAGCG
GTCAGGCTGGAGACAAGAGTCGGGTAGACGGCGTCGGTTCTGGTGTTCCA
GACCCCTTCGCCCGTGATGTCGGTCGAGCGGTTACAAGCGGCAGAGTGAT
GGAGTCCGGGGGCAGGTCAGAGAAAGAGGCCAACCTAGCGGACCCGGCGA
TGGCGGAGGCGGCGAGCAGGGCGGGAGGGCTAGGCGTGGGTTGGGGGGTG
AAGTTCCAGGCCCATGCGGCGCGCGCAATTCCGGCCAGTTTCTTGACGAA
ACGACTCTGA
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