mRNA_H-paniculata_contig39308.10223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39308.10223.1
Unique NamemRNA_H-paniculata_contig39308.10223.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: D8LNS9_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.180e-32
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAALA-NPEVFREQVR 228
            AP VVCT+R WHPNIDLHTG VSLPILT DWRPVLSIN V+FALQLMF+EP E  AVN+ A AAL+ NP++FREQVR
Sbjct:   75 APTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVR 151
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A835Z4F7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-21
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAA-LANPEVFREQVR 228
            AP V  T R WHP++ L TG V LPIL  DWRPVL+I+ V+FALQLM LEP  E   N+AA AA L+ P+VFREQVR
Sbjct:   73 APRVTSTGRIWHPSVHLTTGCVRLPILEADWRPVLTIHTVVFALQLMLLEPSHEYPANDAAAAAALSTPDVFREQVR 149
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A7S2CGK4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGK4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.650e-21
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAALA-NPEVFREQVR 228
            AP V CTTR WHPNI+ + G V LPIL+ DWRPVLSIN V+ ALQL+FLEP  + A N AA  AL  NP++F  QVR
Sbjct:   99 APEVTCTTRVWHPNINPNNGRVDLPILSIDWRPVLSINTVVLALQLLFLEPNPDHATNYAAAEALTKNPQLFESQVR 175
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A7R9YDT8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDT8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.200e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    4 PAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAALAN-PEVFREQVR 228
            P V CT+R WHPNI L TG VSL IL  DW+PV+S+N V+F LQL+FLEP  +++VN  ATAAL   PEV   QVR
Sbjct:   73 PQVHCTSRVWHPNICLRTGRVSLSILDEDWKPVISLNTVVFGLQLLFLEPNADLSVNNEATAALLKGPEVLARQVR 148
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: G4Z9T7_PHYSP (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z9T7_PHYSP)

HSP 1 Score: 86.3 bits (212), Expect = 7.890e-19
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    4 PAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAALA-NPEVFREQVR 228
            P+V C TR WHPNID+ TG V +PIL  DWRPVLSIN V+  LQL+FLEPV    +N  A   L  NPE F+++V+
Sbjct:   78 PSVKCLTRVWHPNIDMATGKVMMPILGTDWRPVLSINTVLLGLQLIFLEPVNHNILNPVAAEQLRQNPEQFKKEVQ 153
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A024TIL6_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TIL6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.330e-18
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAALAN-PEVFREQVRGARESVCQG 255
            AP V    + WHPNID++TG V   IL NDWRPVLSIN ++  LQL+FLEP  E AVN+ A   L N P++FR QV+    ++C G
Sbjct:   91 APVVKSLDKIWHPNIDINTGQVMFSILGNDWRPVLSINTILLGLQLIFLEPSIEFAVNQVAATTLVNDPQLFRRQVQ---HTLCGG 173
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A485LTQ9_9STRA (Aste57867_24886 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTQ9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.390e-18
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNE-AATAALANPEVFREQVR 228
            AP V    R WHPN+D+HTG V   IL  DWRPVLSIN ++  LQL+FLEP  E AVN+ AA   + NP++FR+QV+
Sbjct:   77 APLVFSLDRIWHPNVDVHTGRVMFSILGKDWRPVLSINTILLGLQLIFLEPSIESAVNQPAADTLVQNPQLFRKQVQ 153
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A329RS56_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329RS56_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.560e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAAL-ANPEVFREQVR 228
            AP+V C +R WHPNID+ TG V +PIL  DWRPVLSIN V+  LQL+FLEP  +  +N AA   L  NPE F+++V+
Sbjct:   77 APSVRCLSRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQ 153
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: W2JGX7_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2JGX7_PHYPR)

HSP 1 Score: 86.3 bits (212), Expect = 3.770e-18
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAAL-ANPEVFREQVR 228
            AP+V C TR WHPNID+ TG V +PIL  DWRPVLSIN V+  LQL+FLEP  +  +N AA   L  NPE F+ +V+
Sbjct:  192 APSVRCLTRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYILNPAAAEQLHRNPEQFKNEVQ 268
[Close]
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Match: A0A8J5IXT5_9STRA (UBC core domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IXT5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.380e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLEPVEEVAVNEAATAAL-ANPEVFREQVR 228
            AP+V C +R WHPNID+ TG V +PIL  DWRPVLSIN V+  LQL+FLEP  +  +N AA   L  NPE F+++V+
Sbjct:  178 APSVRCLSRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQ 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39308.10223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNS9_ECTSI1.180e-3276.62UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z4F7_9STRA1.350e-2162.34Ubiquitin-conjugating enzyme/RWD-like protein (Fra... [more]
A0A7S2CGK4_9STRA3.650e-2162.34Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YDT8_9STRA3.200e-2060.53Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
G4Z9T7_PHYSP7.890e-1956.58UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A024TIL6_9STRA1.330e-1852.33UBC core domain-containing protein n=1 Tax=Aphanom... [more]
A0A485LTQ9_9STRA1.390e-1855.84Aste57867_24886 protein n=1 Tax=Aphanomyces stella... [more]
A0A329RS56_9STRA1.560e-1855.84UBC core domain-containing protein n=3 Tax=Phytoph... [more]
W2JGX7_PHYPR3.770e-1857.14UBC core domain-containing protein n=12 Tax=Phytop... [more]
A0A8J5IXT5_9STRA6.380e-1855.84UBC core domain-containing protein n=1 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39308contigH-paniculata_contig39308:98..1638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D8LNS9
KEGG koko:K10579
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsKOG0420@1,KOG0420@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-08_005950.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.0115962-CDS-H-paniculata_contig39308:97..2201622930206.0115962-CDS-H-paniculata_contig39308:97..220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39308 98..220 -
1691481190.2083926-CDS-H-paniculata_contig39308:97..2201691481190.2083926-CDS-H-paniculata_contig39308:97..220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39308 98..220 -
1622930206.0329437-CDS-H-paniculata_contig39308:1503..16381622930206.0329437-CDS-H-paniculata_contig39308:1503..1638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39308 1504..1638 -
1691481190.2285314-CDS-H-paniculata_contig39308:1503..16381691481190.2285314-CDS-H-paniculata_contig39308:1503..1638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39308 1504..1638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39308.10223.1prot_H-paniculata_contig39308.10223.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39308 98..1638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39308.10223.1

>prot_H-paniculata_contig39308.10223.1 ID=prot_H-paniculata_contig39308.10223.1|Name=mRNA_H-paniculata_contig39308.10223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
APAVVCTTRTWHPNIDLHTGFVSLPILTNDWRPVLSINCVIFALQLMFLE
PVEEVAVNEAATAALANPEVFREQVRGARESVCQG*
back to top

mRNA from alignment at H-paniculata_contig39308:98..1638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39308.10223.1 ID=mRNA_H-paniculata_contig39308.10223.1|Name=mRNA_H-paniculata_contig39308.10223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1541bp|location=Sequence derived from alignment at H-paniculata_contig39308:98..1638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCGGCTGTCGTGTGCACCACACGGACATGGCATCCGAATATCGACCT
TCATACCGGATTCGTGTCCCTGCCTATCCTTACAAACGACTGGCGGCCTG
TCTTGAGTATCAACTGCGTCATTTTCGCGCTTCAGGTGAGGGAAAGACAC
GGCCTCACGCCTACTTGGTTCGGCCGAACCGGGGTGGCGCCAACCCCACA
GAGGAATAAATAACTCTGTTCTGTTAAAGGAAATGTAGAAATACTTGAGT
ATGAAAGCATCGAATAGAGGTTTTCGCCTCAGCCTTCCGGGGGTTGAAAA
CAAACAAAAAAACACGGTCTCACTTGAATGTTCCACCAGACCTATCGGGC
GCGTTGCACCTCGTGCTTTTTCATTAACGACTTTGTGTGGGCAACCCCTT
AACTGTGTCACTATTAACAGACACAATGTTAACACCATTAATGTAGGTTG
CATACTAAACGAAATCTTAACTGCAGCTGAAGCTTAACTCTTCTCGAGGA
CCTCAAAAATCTGTTGTTTTTCGGGATTTGCTCTTGGGCACTTGGTTTCT
CATGCAGAAAAGCGTTGTATGCTGCTGGAAAAAAATATATATAATAATAA
TAATAGGTGAGATGGTACAGACGAGGGAGTGATCTTTCGTCGTGTCTAAG
AAGAGCATCGATTGATATTGTCGGTGTTTTTCCACCCACCGAAAGAGTAA
CAGGGGTTGATTTTACGCCTGTGTTGTGTTCCGAAGGGGTTGAAGTATTG
GCATATACTGCCGGTTTTTTATTATCAACATGAAATTCGCTTTTTACGGC
CGTTGAGTAGGTTTGTTGCACTTGACAGTTTCGTCGCAGGCGTTGGTACT
CACAACTAGAAGCTTCCCTTCCTTCTCTTTTTATTAATCGGATCGAGCCT
GTGTTAGCCCTTGATTTATTAGTTTCCAAATGCAGACAGGGAAAATATCT
ACACGAATACATATATATATATATTACGCTGCTGGACTGGTTCATGTTGT
CATCTTGTGTCGTAACGGTCATATTTACCTGTCCATTTCAGTCGGAATGA
TTACTGTGTTTTACTGTTGGTGATACCACCGTGGGGAACTGTTTGGTGCG
CTAGATGTGCCACGCTGGCAGGGCGCACAAAGGCAGACAGCCAGTCAGCC
TGCCAGCTTGCTAGCTTGCATTGTTGAGGTTTGTTGAAAAGCTGCCCTTC
GTATGATCAACTTCCGCCTGAAGATCTTGATAGATATAGCCAATTACTAT
TGACTTTCCTCCCCACGTGGGCACGCATATGCACAGTCGCCTCGTTGTTC
ACGGTTGTTCCTATTTGCATGGTTATTTAGAGACCCCCTGACATTGACCC
CGCTCGTCTGGCCGTCTCGGCTCCGGTCTTCGCGTTTGTCATGCTCTACC
CTTGTGTCGTTTTTGCAGCTCATGTTCCTTGAGCCTGTGGAGGAAGTCGC
GGTCAACGAAGCGGCGACTGCCGCGCTGGCCAATCCTGAGGTCTTCCGGG
AACAGGTGAGGGGGGCGAGGGAGAGTGTCTGTCAAGGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig39308:98..1638-

>mRNA_H-paniculata_contig39308.10223.1 ID=mRNA_H-paniculata_contig39308.10223.1|Name=mRNA_H-paniculata_contig39308.10223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig39308:98..1638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCGGCTGTCGTGTGCACCACACGGACATGGCATCCGAATATCGACCT
TCATACCGGATTCGTGTCCCTGCCTATCCTTACAAACGACTGGCGGCCTG
TCTTGAGTATCAACTGCGTCATTTTCGCGCTTCAGGCCCCGGCTGTCGTG
TGCACCACACGGACATGGCATCCGAATATCGACCTTCATACCGGATTCGT
GTCCCTGCCTATCCTTACAAACGACTGGCGGCCTGTCTTGAGTATCAACT
GCGTCATTTTCGCGCTTCAGCTCATGTTCCTTGAGCCTGTGGAGGAAGTC
GCGGTCAACGAAGCGGCGACTGCCGCGCTGGCCAATCCTGAGGTCTTCCG
GGAACAGGTGAGGGGGGCGAGGGAGAGTGTCTGTCAAGGGTAGCTCATGT
TCCTTGAGCCTGTGGAGGAAGTCGCGGTCAACGAAGCGGCGACTGCCGCG
CTGGCCAATCCTGAGGTCTTCCGGGAACAGGTGAGGGGGGCGAGGGAGAG
TGTCTGTCAAGGGTAG
back to top