mRNA_H-paniculata_contig3919.10195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3919.10195.1
Unique NamemRNA_H-paniculata_contig3919.10195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A6H5L0W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.050e-34
Identity = 83/100 (83.00%), Postives = 87/100 (87.00%), Query Frame = -2 
Query:   78 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKKVSVEVVLRXXXXXXXXXXXXXXXXXXXXGVEDALIML 377
            ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANA+RNLPTSVKIWLRAAELE++ A+KKV       XXXXXXXXXXXXXXX     GVEDALIML
Sbjct:   37 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKKVXXXXXXXXXXXXXXXXXXXXXXE----GVEDALIML 132
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BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.850e-31
Identity = 83/100 (83.00%), Postives = 87/100 (87.00%), Query Frame = -2 
Query:   78 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKKVSVEVVLRXXXXXXXXXXXXXXXXXXXXGVEDALIML 377
            ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANA+RNLPTSVKIWLRAAELE++ A+KKV       XXXXXXXXXXXXXXX     GVEDALIML
Sbjct:  200 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKKVXXXXXXXXXXXXXXXXXXXXXXE----GVEDALIML 295
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.940e-20
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = -2 
Query:  186 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKKV 377
            ARK IK GCE CPDNEDVWLE ARLQTP+NAKTVLANAVR+LP SVKI     +LE+    K++
Sbjct:  189 ARKVIKQGCETCPDNEDVWLEAARLQTPDNAKTVLANAVRHLPGSVKIXXXXXDLETDATKKRI 252
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BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A1Y1UH64_9TREE (PRP1 splicing factor, N-terminal-domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UH64_9TREE)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-19
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKK 377
            ARK I  GCE CP +EDVW   A L TPENAK VL  AV+N+P SVKIWL+AA LES PAAKK
Sbjct:  312 ARKIIAEGCEKCPKSEDVWFHAAELNTPENAKVVLGKAVQNVPQSVKIWLKAASLESEPAAKK 374
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BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A4Q1BS67_TREME (Pre-mRNA-processing factor 6 n=2 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BS67_TREME)

HSP 1 Score: 92.0 bits (227), Expect = 3.490e-19
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKK 377
            ARK I  GCE CP+NEDVW   A L TPENAK +L  AV+++PTSVKIWL+AA LES  AAKK
Sbjct:  327 ARKIIAEGCEKCPNNEDVWFHAAELNTPENAKIILGKAVQHVPTSVKIWLKAASLESDVAAKK 389
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A7S3LP65_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LP65_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.690e-19
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESS-PAAKK 377
            AR  I+ GCEACP++EDVWLE ARLQT ++AK VLANAVR++P SVK+WL AA+LESS P  KK
Sbjct:  184 ARVLIQKGCEACPESEDVWLEAARLQTAQHAKAVLANAVRHIPRSVKLWLHAADLESSNPTNKK 247
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: R1E6U8_EMIHU (PRP1_N domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E6U8_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 6.480e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = -2 
Query:  204 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESS 377
            AR+ I+ GC AC  NEDVWLE ARLQTPENAK VLA+A++ +PTSVKIWL+AA LES+
Sbjct:  305 ARQIIREGCRACAANEDVWLEAARLQTPENAKVVLADAIKKIPTSVKIWLQAASLESN 362
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A4V4LTJ9_9BASI (PRP1_N domain-containing protein n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4V4LTJ9_9BASI)

HSP 1 Score: 90.5 bits (223), Expect = 1.210e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKK 377
            ARK I AGCE CP +EDVWLE ARL  P++AK +LANA+ +LP SVKIWL+A +LE+ P +K+
Sbjct:  322 ARKVIAAGCENCPKSEDVWLEAARLNIPQDAKVILANAISHLPQSVKIWLKAVDLENDPKSKR 384
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A7S4QF56_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QF56_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.590e-18
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKK 377
            ARK I+ GCEACPD+EDVWLE A L  PE AKT+LA AVR LP SV I+LRAA+LE + +AKK
Sbjct:  386 ARKVIQEGCEACPDSEDVWLEAASLHPPEVAKTILATAVRRLPKSVNIFLRAADLEHNDSAKK 448
[Close]
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Match: A0A7S4QCV6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCV6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.660e-18
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = -2 
Query:  189 ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAVRNLPTSVKIWLRAAELESSPAAKK 377
            ARK I+ GCEACPD+EDVWLE A L  PE AKT+LA AVR LP SV I+LRAA+LE + +AKK
Sbjct:  386 ARKVIQEGCEACPDSEDVWLEAASLHPPEVAKTILATAVRRLPKSVNIFLRAADLEHNDSAKK 448
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3919.10195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0W4_9PHAE3.050e-3483.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI1.850e-3183.00PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YM25_9STRA3.940e-2068.75PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A1Y1UH64_9TREE1.370e-1968.25PRP1 splicing factor, N-terminal-domain-containing... [more]
A0A4Q1BS67_TREME3.490e-1966.67Pre-mRNA-processing factor 6 n=2 Tax=Tremella mese... [more]
A0A7S3LP65_9STRA4.690e-1968.75Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
R1E6U8_EMIHU6.480e-1970.69PRP1_N domain-containing protein n=1 Tax=Emiliania... [more]
A0A4V4LTJ9_9BASI1.210e-1861.90PRP1_N domain-containing protein n=1 Tax=Wallemia ... [more]
A0A7S4QF56_9STRA1.590e-1868.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QCV6_9STRA1.660e-1868.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3919contigH-paniculata_contig3919:4665..5807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930201.9756231-CDS-H-paniculata_contig3919:4664..48421622930201.9756231-CDS-H-paniculata_contig3919:4664..4842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 4665..4842 +
1691481188.3555717-CDS-H-paniculata_contig3919:4664..48421691481188.3555717-CDS-H-paniculata_contig3919:4664..4842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 4665..4842 +
1622930201.9996226-CDS-H-paniculata_contig3919:5607..58071622930201.9996226-CDS-H-paniculata_contig3919:5607..5807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 5608..5807 +
1691481188.364257-CDS-H-paniculata_contig3919:5607..58071691481188.364257-CDS-H-paniculata_contig3919:5607..5807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 5608..5807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3919.10195.1prot_H-paniculata_contig3919.10195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3919 4665..5807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3919.10195.1

>prot_H-paniculata_contig3919.10195.1 ID=prot_H-paniculata_contig3919.10195.1|Name=mRNA_H-paniculata_contig3919.10195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
AFSYVSRRASASHISTLCGTHSTALPNMIKASSTPSSSIAVFHSLTELGT
NSKARLKTTSTLTFLAAGDDSSSAALSQILTLVGKLRTAFASTVFAFSGV
WSLAPSSHTSSLSGHASHPALMVLRA
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mRNA from alignment at H-paniculata_contig3919:4665..5807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3919.10195.1 ID=mRNA_H-paniculata_contig3919.10195.1|Name=mRNA_H-paniculata_contig3919.10195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1143bp|location=Sequence derived from alignment at H-paniculata_contig3919:4665..5807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTTCGTACGTCTCCAGGCGAGCGAGCGCCAGCCACATATCCACGCT
GTGCGGGACGCATTCCACAGCTCTGCCCAACATGATCAAGGCGTCTTCTA
CGCCCTCTAGCTCGATCGCGGTCTTCCACAGCTTGACAGAGTTGGGCACG
AACTCTAAAGCCCGCCTCAAAACCACCTGTTAACAAGGATGGCACAATAC
GCAGAGTGGGAGAAGAGGAATGAAACGGGGAGCAGGGGCGGGCAACACAT
GTTTCAAACTAACAACACCGCTAGAACTAAAGTATGATACCGTAGCCACA
AGTGAACGTAAAATATGACCGCGGGTCTGAGTGATTGAATCAAAGTGTTG
AACGAAAATGAGAACGACGACTGGTCCCTCCACGCAGGGTAAATACTGCG
ACGTGCCTTTTTGCGGTCTTGTGGAGTACTACCATGCTTTGTAAAAAATC
TCGTAGATTTATTTTACCACGCAGATGATGCTCATAACATCAGCATGATA
ATATATTTTGATCTTTCCTAACGACCATCATTGGTCACAATACAACTCTA
CGTTTGATTCATCGAATAGATCTCTCTTCGAATGCATCTGTACTAATTGA
AACGCCGCGTTGCTCATGTATGGCTCCAGAGGCTTTGAAGACGACGAGGA
TAACAAGCTATACTATACCTCTCGCGTTATATTTTCAATTGCTTCTTCAA
ATCGTGGGGTTGTTCGTATCGGGACTGTGTCTGGAAAAGGTACACTATCT
TCACTCAAAATGCCAATAAGGTACAACATATCTAAATAAGTTTGGCACTA
CAAAGATCATAACCAAAAGAAACACATAACAATGACAAGCCGGAAATAGC
GACCAATCTCAGAAAATCTTGAGAGAGCTTTAGATCAAGAGACCACACAT
GAGAAAACAAAAAGGACAGGGGGGGGGGTAGCAGCAATAGTAGCGACGCT
CACCTTCTTAGCTGCAGGGGACGACTCAAGCTCTGCCGCTCTCAGCCAGA
TCTTGACGCTCGTCGGCAAGTTACGTACAGCATTCGCTAGCACCGTCTTC
GCATTTTCCGGCGTCTGGAGCCTAGCGCCCTCGAGCCACACGTCTTCGTT
GTCTGGACATGCCTCGCACCCAGCCTTAATGGTCTTGCGTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3919:4665..5807+

>mRNA_H-paniculata_contig3919.10195.1 ID=mRNA_H-paniculata_contig3919.10195.1|Name=mRNA_H-paniculata_contig3919.10195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig3919:4665..5807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTTCGTACGTCTCCAGGCGAGCGAGCGCCAGCCACATATCCACGCT
GTGCGGGACGCATTCCACAGCTCTGCCCAACATGATCAAGGCGTCTTCTA
CGCCCTCTAGCTCGATCGCGGTCTTCCACAGCTTGACAGAGTTGGGCACG
AACTCTAAAGCCCGCCTCAAAACCACCTGCGTTTTCGTACGTCTCCAGGC
GAGCGAGCGCCAGCCACATATCCACGCTGTGCGGGACGCATTCCACAGCT
CTGCCCAACATGATCAAGGCGTCTTCTACGCCCTCTAGCTCGATCGCGGT
CTTCCACAGCTTGACAGAGTTGGGCACGAACTCTAAAGCCCGCCTCAAAA
CCACCTCGACGCTCACCTTCTTAGCTGCAGGGGACGACTCAAGCTCTGCC
GCTCTCAGCCAGATCTTGACGCTCGTCGGCAAGTTACGTACAGCATTCGC
TAGCACCGTCTTCGCATTTTCCGGCGTCTGGAGCCTAGCGCCCTCGAGCC
ACACGTCTTCGTTGTCTGGACATGCCTCGCACCCAGCCTTAATGGTCTTG
CGTGCCCGACGCTCACCTTCTTAGCTGCAGGGGACGACTCAAGCTCTGCC
GCTCTCAGCCAGATCTTGACGCTCGTCGGCAAGTTACGTACAGCATTCGC
TAGCACCGTCTTCGCATTTTCCGGCGTCTGGAGCCTAGCGCCCTCGAGCC
ACACGTCTTCGTTGTCTGGACATGCCTCGCACCCAGCCTTAATGGTCTTG
CGTGCC
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