mRNA_H-paniculata_contig38729.10118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU) HSP 1 Score: 123 bits (308), Expect = 7.770e-27 Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFWGTTTTA*VIAYITRKARASS*AGT*DLMNRIS*PVIV 501
LRSDQGGEF+ F+ F ENGI +F+A +TPQQNGVAER R++ ++ RS + M R+WAEA AVY LN A + G TP E W P + +L +FG + Y + RR LDDK+ C ++ + KA+A L N ++ +IV
Sbjct: 56 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKC---------ILVGYSEKAKAYK------LFNPLTNKIIV 207
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU) HSP 1 Score: 123 bits (308), Expect = 9.760e-27 Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFWGTTTTA*VIAYITRKARASS*AGT*DLMNRIS*PVIV 501
LRSDQGGEF+ F+ F ENGI +F+A +TPQQNGVAER R++ ++ RS + M R+WAEA AVY LN A + G TP E W P + +L +FG + Y + RR LDDK+ C ++ + KA+A L N ++ +IV
Sbjct: 622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKC---------ILVGYSEKAKAYK------LFNPLTNKIIV 773
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU) HSP 1 Score: 123 bits (308), Expect = 1.010e-26 Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFWGTTTTA*VIAYITRKARASS*AGT*DLMNRIS*PVIV 501
LRSDQGGEF+ F+ F ENGI +F+A +TPQQNGVAER R++ ++ RS + M R+WAEA AVY LN A + G TP E W P + +L +FG + Y + RR LDDK+ C ++ + KA+A L N ++ +IV
Sbjct: 218 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKC---------ILVGYSEKAKAYK------LFNPLTNKIIV 369
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU) HSP 1 Score: 123 bits (308), Expect = 1.140e-26 Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFWGTTTTA*VIAYITRKARASS*AGT*DLMNRIS*PVIV 501
LRSDQGGEF+ F+ F ENGI +F+A +TPQQNGVAER R++ ++ RS + M R+WAEA AVY LN A + G TP E W P + +L +FG + Y + RR LDDK+ C ++ + KA+A L N ++ +IV
Sbjct: 622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKC---------ILVGYSEKAKAYK------LFNPLTNKIIV 773
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A1J3H758_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H758_NOCCA) HSP 1 Score: 122 bits (305), Expect = 2.380e-26 Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKA 375
LRSD GGE+T AF++F +NGI + S HTPQQNGVAER R + ++ RS M N+ +R+W +A TA Y +N PT+ N +P++ + T P +DYL VFGC+ +V+ +QR LD K+
Sbjct: 80 LRSDNGGEYTSNAFKQFLDKNGIVHQTSCPHTPQQNGVAERKNRHLMEVARSMMFHTNVPKRFWGDAVVTACYLINRIPTKILNDLSPFKVLNQTEPSIDYLRVFGCVCFVLIPGEQRNKLDAKS 204
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A1J3G8B8_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G8B8_NOCCA) HSP 1 Score: 122 bits (305), Expect = 2.410e-26 Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKA 375
LRSD GGE+T AF++F +NGI + S HTPQQNGVAER R + ++ RS M N+ +R+W +A TA Y +N PT+ N +P++ + T P +DYL VFGC+ +V+ +QR LD K+
Sbjct: 161 LRSDNGGEYTSNAFKQFLDKNGIVHQTSCPHTPQQNGVAERKNRHLMEVARSMMFHTNVPKRFWGDAVVTACYLINRIPTKILNDLSPFKVLNQTEPSIDYLRVFGCVCFVLIPGEQRNKLDAKS 285
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A5B7BAX9_DAVIN (Putative lectin receptor kinase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAX9_DAVIN) HSP 1 Score: 118 bits (295), Expect = 6.550e-26 Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFW 390
LRSD+GGE+T AFQE+ E GI +F+ A+TPQQNG+AER R++ +MTR+ + + +++WAEA + Y N PT+ TP E W P + +L +FGC+ Y +R+ LDD+ C +
Sbjct: 6 LRSDRGGEYTSNAFQEYCREQGIRHQFTTAYTPQQNGIAERKNRTILNMTRTMLKEKGLSKQFWAEAVACSTYLPNRYPTKSVKHMTPQEAWSGYKPNVAHLRIFGCVAYAQVPEAKRKKLDDRGEKCIF 135
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A4D8ZXH0_SALSN (Integrase catalytic domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZXH0_SALSN) HSP 1 Score: 119 bits (299), Expect = 9.990e-26 Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVC 384
LR+D+GGEFT F +F E G++++ + A TPQQNG+AER R++ +M R + + R++WAEA AV+ LN +PT G TP E W P++DY VFGC+ +V Q+R LDDK+ +C
Sbjct: 151 LRTDRGGEFTSNEFNDFCEEAGVSRQLTTAFTPQQNGIAERKNRTIMNMVRCILNDKGVPRKFWAEAAKWAVHVLNRSPTSVIQGKTPEEIWSGMKPRVDYFRVFGCIAHVHVPDQRRTKLDDKSTIC 278
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A1J3FT80_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FT80_NOCCA) HSP 1 Score: 119 bits (298), Expect = 2.270e-25 Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKA 375
LRSD GGE+T +AF+++ +NGI + S +TPQQNGVAER R + ++ R+ M N+ +R+W +A TA Y +N PT+ +P+E + T P +DYL VFGC+ YV+ +QR LD K+
Sbjct: 610 LRSDNGGEYTSQAFKQYLNKNGIIHQTSCPYTPQQNGVAERKNRHLMEVARAMMFHTNVPKRFWGDAVVTACYLINRIPTKILQDSSPFEVLNKTQPPIDYLRVFGCVCYVLVPGEQRNKLDAKS 734
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Match: A0A4Y1RDE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RDE4_PRUDU) HSP 1 Score: 117 bits (293), Expect = 2.300e-25 Identity = 51/130 (39.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query: 1 LRSDQGGEFTGEAFQEFRAENGINQEFSAAHTPQQNGVAERSWRSVFDMTRSKMITANMGRRYWAEATCTAVYCLNHAPTRPHNGGTPYEKWHDTTPKLDYLLVFGCMTYVMFQSQQRRNLDDKAWVCFW 390
+RSD+GGE+T + F+++ + GI ++ +A+++PQQNG+AER R++ +M S M + +R+WAEA TAVY LN +PT+ TP+E W P + +L +FGC+ Y +++R DDK+ C +
Sbjct: 88 MRSDRGGEYTSQEFEDYCKDEGIWKQLTASYSPQQNGIAERKNRTIVEMATSMMNEKGLPKRFWAEAVFTAVYILNRSPTKVVKNKTPFEAWSGFKPSVRHLKIFGCICYAHIPAEKRTKFDDKSQKCIF 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38729.10118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig38729.10118.1 >prot_H-paniculata_contig38729.10118.1 ID=prot_H-paniculata_contig38729.10118.1|Name=mRNA_H-paniculata_contig38729.10118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp MGVFLGYDDDSLSYRIYNPESKSVQLSRNVRFDEQDFVTGHRGQLEHDGTback to top mRNA from alignment at H-paniculata_contig38729:779..2025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig38729.10118.1 ID=mRNA_H-paniculata_contig38729.10118.1|Name=mRNA_H-paniculata_contig38729.10118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig38729:779..2025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig38729:779..2025+ >mRNA_H-paniculata_contig38729.10118.1 ID=mRNA_H-paniculata_contig38729.10118.1|Name=mRNA_H-paniculata_contig38729.10118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig38729:779..2025+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |