mRNA_H-paniculata_contig38727.10117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38727.10117.1
Unique NamemRNA_H-paniculata_contig38727.10117.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A6H5LFZ8_9PHAE (Diaminopimelate epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LFZ8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.490e-42
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
            +V++R H+KMVVWERGCGITQACGTGACALVVA+VL GLADR+CTVTLPGGDL IEWRESDGKVYMTGPA+LAF GDAVVR
Sbjct:  253 QVLNRGHVKMVVWERGCGITQACGTGACALVVASVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQGDAVVR 333          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A835YU85_9STRA (Diaminopimelate epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU85_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.280e-35
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
            +V+SR HLKM VWERG G T ACGTGACALVVAAVLNGLADR+CTVTLPGGDL+I+WRE+D KVYMTGPA   F+G   V+
Sbjct:  224 QVLSRSHLKMKVWERGAGATLACGTGACALVVAAVLNGLADRKCTVTLPGGDLVIDWREADNKVYMTGPATPVFSGSVRVQ 304          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A8J5XME3_DIALT (Diaminopimelate epimerase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XME3_DIALT)

HSP 1 Score: 125 bits (314), Expect = 2.100e-33
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
            KV+SR HL+M VWERG G T ACGTGACAL+VAAVLNGLA+R+ TV+LPGGDL IEWRESDGK+ MTGPA+LA+TG
Sbjct:  227 KVLSRTHLQMRVWERGAGATLACGTGACALLVAAVLNGLAERRATVSLPGGDLEIEWRESDGKITMTGPAELAYTG 302          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A0D2IWC9_9CHLO (Diaminopimelate epimerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IWC9_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 9.020e-32
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVV 240
            +V++R H++MVVWERG G T ACGTGACA VVA VL G  DRQC V LPGG L IEWRESD  +YMTGPA+LAF+G   V
Sbjct:   37 EVLTRSHVRMVVWERGAGRTLACGTGACATVVAGVLEGKVDRQCRVDLPGGPLHIEWRESDNHIYMTGPAELAFSGSVPV 116          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7S0NVQ4_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NVQ4_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.660e-31
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
            +V+SR HLKM VWERG G T ACGTGACAL+VAAVL GLA+R  TV+LPGGDLLI+WRE   KVYMTGPA   F G
Sbjct:   22 QVLSRTHLKMKVWERGAGPTLACGTGACALLVAAVLGGLAERTATVSLPGGDLLIDWREDSNKVYMTGPAVPVFDG 97          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7S2GTM2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GTM2_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.090e-30
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
            +V+S  HLKMVVWERG G T ACGTGACAL VAAVL G A+R CTV+LPGGDL IEW E+D K+YMTGPA+  F G
Sbjct:  100 QVLSPTHLKMVVWERGAGPTLACGTGACALTVAAVLAGKAERSCTVSLPGGDLEIEWSEADNKIYMTGPAERVFAG 175          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A7N0U528_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U528_KALFE)

HSP 1 Score: 114 bits (284), Expect = 2.230e-30
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDA 234
            +V+S  HLKM VWERG G T ACGTGACALVVAAVL G A RQCTV LPGG L IEWRE+D  +YMTGPA++ + G A
Sbjct:   88 QVLSPTHLKMRVWERGAGATLACGTGACALVVAAVLEGRASRQCTVDLPGGPLEIEWREADNHIYMTGPAEVVYYGSA 165          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A2K1JXK3_PHYPA (Diaminopimelate epimerase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JXK3_PHYPA)

HSP 1 Score: 119 bits (297), Expect = 2.530e-30
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAVVR 243
            +V SR+HLKM VWERG G TQACGTGACA+VVAAV  G A+R+CTV LPGG L IEWRESD  +YMTGPAK  F G  V+ 
Sbjct:  299 EVFSRNHLKMRVWERGAGATQACGTGACAVVVAAVKEGRAERRCTVDLPGGPLEIEWRESDNHIYMTGPAKRVFQGTVVLE 379          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: A0A0A9CS69_ARUDO (Pco102509 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CS69_ARUDO)

HSP 1 Score: 111 bits (278), Expect = 5.690e-30
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTGDAV 237
            +V+SR HLKM VWERG G T ACGTGACA+V+AAVL G A+R+C V LPGG L IEWRE D  VYMTGPA+  F G  +
Sbjct:   47 QVLSRSHLKMRVWERGAGATLACGTGACAVVIAAVLEGRAERKCIVDLPGGPLEIEWREDDNHVYMTGPAEAIFYGSII 125          
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Match: UPI000B8C7317 (diaminopimelate epimerase, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C7317)

HSP 1 Score: 113 bits (283), Expect = 5.870e-30
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 KVMSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGDLLIEWRESDGKVYMTGPAKLAFTG 228
            +V SR HLKM VWERG G T ACGTGACA+VVAAVL G +DR+CTV LPGG L IEWRE D  VYMTGPA++ F G
Sbjct:  111 EVFSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGHSDRKCTVDLPGGPLDIEWREEDNHVYMTGPAEVVFYG 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38727.10117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LFZ8_9PHAE1.490e-4286.42Diaminopimelate epimerase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YU85_9STRA2.280e-3575.31Diaminopimelate epimerase n=1 Tax=Tribonema minus ... [more]
A0A8J5XME3_DIALT2.100e-3377.63Diaminopimelate epimerase n=2 Tax=Diacronema luthe... [more]
A0A0D2IWC9_9CHLO9.020e-3267.50Diaminopimelate epimerase n=1 Tax=Monoraphidium ne... [more]
A0A7S0NVQ4_9EUKA1.660e-3172.37Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S2GTM2_9EUKA1.090e-3071.05Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7N0U528_KALFE2.230e-3069.23Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A2K1JXK3_PHYPA2.530e-3069.14Diaminopimelate epimerase n=2 Tax=Physcomitrium pa... [more]
A0A0A9CS69_ARUDO5.690e-3065.82Pco102509 n=1 Tax=Arundo donax TaxID=35708 RepID=A... [more]
UPI000B8C73175.870e-3071.05diaminopimelate epimerase, chloroplastic-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38727contigH-paniculata_contig38727:484..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue5.3e-34
Seed eggNOG ortholog2880.D7G034
KEGG rclassRC00302
KEGG koko:K01778
KEGG ReactionR02735
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.diaminopimelate epimerase activity
EggNOG OGs2QQKJ@2759,COG0253@1
EC5.1.1.7
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size246
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930188.5245483-UTR-H-paniculata_contig38727:483..4891622930188.5245483-UTR-H-paniculata_contig38727:483..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38727 484..489 +
1691481183.8971636-UTR-H-paniculata_contig38727:483..4891691481183.8971636-UTR-H-paniculata_contig38727:483..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38727 484..489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930188.555982-CDS-H-paniculata_contig38727:489..7291622930188.555982-CDS-H-paniculata_contig38727:489..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38727 490..729 +
1691481183.907625-CDS-H-paniculata_contig38727:489..7291691481183.907625-CDS-H-paniculata_contig38727:489..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38727 490..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38727.10117.1prot_H-paniculata_contig38727.10117.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38727 490..729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38727.10117.1

>prot_H-paniculata_contig38727.10117.1 ID=prot_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MSRHHLKMVVWERGCGITQACGTGACALVVAAVLNGLADRQCTVTLPGGD
LLIEWRESDGKVYMTGPAKLAFTGDAVVR*
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mRNA from alignment at H-paniculata_contig38727:484..729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38727.10117.1 ID=mRNA_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig38727:484..729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCATGAGCCGTCATCACCTGAAGATGGTAGTGTGGGAGAGGGGTTG CGGCATCACGCAAGCTTGCGGAACGGGAGCGTGCGCGCTCGTGGTGGCTG CCGTGCTTAACGGCCTTGCGGATAGGCAGTGCACGGTGACCCTTCCCGGC GGAGATCTGTTGATCGAGTGGCGGGAGTCGGATGGAAAAGTGTACATGAC GGGTCCAGCGAAGTTGGCATTCACGGGGGATGCTGTCGTTCGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38727:484..729+

>mRNA_H-paniculata_contig38727.10117.1 ID=mRNA_H-paniculata_contig38727.10117.1|Name=mRNA_H-paniculata_contig38727.10117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig38727:484..729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCGTCATCACCTGAAGATGGTAGTGTGGGAGAGGGGTTGCGGCAT
CACGCAAGCTTGCGGAACGGGAGCGTGCGCGCTCGTGGTGGCTGCCGTGC
TTAACGGCCTTGCGGATAGGCAGTGCACGGTGACCCTTCCCGGCGGAGAT
CTGTTGATCGAGTGGCGGGAGTCGGATGGAAAAGTGTACATGACGGGTCC
AGCGAAGTTGGCATTCACGGGGGATGCTGTCGTTCGATGAATGAGCCGTC
ATCACCTGAAGATGGTAGTGTGGGAGAGGGGTTGCGGCATCACGCAAGCT
TGCGGAACGGGAGCGTGCGCGCTCGTGGTGGCTGCCGTGCTTAACGGCCT
TGCGGATAGGCAGTGCACGGTGACCCTTCCCGGCGGAGATCTGTTGATCG
AGTGGCGGGAGTCGGATGGAAAAGTGTACATGACGGGTCCAGCGAAGTTG
GCATTCACGGGGGATGCTGTCGTTCGATGA
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