|
|
Homology
BLAST of mRNA_H-paniculata_contig3838.10051.1 vs. uniprot
Match: A0A6T9LUZ6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9LUZ6_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 1.410e-11 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query: 209 VIVARPAKSSA--AQKINKPLGQESFRRIRDARQLLDRVDVPLRARNFDEVQELLEDPASSKLDKALTDLVQSNVLPSDDKVSVGTIRTYGLAADALITLGGLSAATRDGDGGEARKMLVLTKEALNDIL 592
V RP SA A K+N + ++ +R AR LD+VD + ++ +L +P + L+ L LV S L D++ S+GTI+ YG+ ADALI +GGL +A R GDG A K +L++I+
Sbjct: 55 VRTGRPKAGSAKAAGKVNAAVAYAAYAELRAARSSLDKVDSLIGKSDYKAAASILTEPPLATLEVNLLTLVASPELGPDERKSIGTIKRYGVGADALIMMGGLGSALRSGDGSGASDYTSKAKASLDEIV 184
BLAST of mRNA_H-paniculata_contig3838.10051.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.950e-9 Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 2
Query: 401 LTDLVQSNVLPSDDKVSVGTIRTYGLAADALITLGGLSAATRDGDGGEARKMLVLTKEALND 586
L +LV SNVL +DKV+VGTIR YG+AAD LITLGG+ AA D D EA + L L K +L+D
Sbjct: 213 LLNLVNSNVLEREDKVAVGTIRRYGIAADILITLGGVRAAANDEDAREALRSLTLAKNSLDD 274
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 67.8 |
| Seed ortholog evalue | 6.8e-09 |
| Seed eggNOG ortholog | 44056.XP_009042273.1 |
| KEGG ko | ko:K13347,ko:K13348 |
| KEGG Pathway | ko04146,map04146 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030154,GO:0032502,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0044424,GO:0044444,GO:0044464,GO:0048066,GO:0048869,GO:0050896,GO:0050931,GO:0050935,GO:0051716,GO:0070887,GO:1901700,GO:1901701 |
| EggNOG free text desc. | Belongs to the peroxisomal membrane protein PXMP2 4 family |
| EggNOG OGs | KOG1944@1,KOG1944@2759 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001 |
| Exons | 4 |
| Model size | 1565 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3838.10051.1 >prot_H-paniculata_contig3838.10051.1 ID=prot_H-paniculata_contig3838.10051.1|Name=mRNA_H-paniculata_contig3838.10051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MRPCFGRIMRFLVQASAALVLFPLANGFSMNLARSPGKVQRGTTSRHEII
EQFVKIASGTFAGGVIVARPAKSSAAQKINKPLGQESFRRIRDARQLLDR
VDVPLRARNFDEVQELLEDPASSKLDKALTDLVQSNVLPSDDKVSVGTIR
TYGLAADALITLGGLSAATRDGDGGEARKMLVLTKEALNDILTIGVNNDL
NRT* back to topmRNA from alignment at H-paniculata_contig3838:2..3884- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3838.10051.1 ID=mRNA_H-paniculata_contig3838.10051.1|Name=mRNA_H-paniculata_contig3838.10051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3883bp|location=Sequence derived from alignment at H-paniculata_contig3838:2..3884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGTTGTACATCCTATGCGCCCTTGCTTCGGGAGGATCATGCGGTTTC
TCGTCCAAGCATCTGCGGCATTGGTGCTCTTCCCCTTGGCAAATGGTTTT
TCAATGAACCTAGCGCGAAGTCCTGGGAAAGTACAAAGAGGAACAACTAG
TAGGCATGAAATCATCGAGCAATTTGTAAAAATTGCCTCTGGGACATTCG
CAGGTGCGCAAATCCTACTCTGGTCTCTTAAAAGTACATATAGAGACAAC
ACATGATCAAGACATGATCAAGACACGTACGATCGGCTGAAATCACCATG
ATGCGGAGCCTTGCTGTTATCTATCTGGCAGTCGCTGCCATGGTCTAGCG
TTTCTAGAGGATTTACCCGCCTGAAGACGGGACGCCAAAATGAAAAAATC
GTCCGTCAGCTTGCGTCTCCCCACATCACATGATCAGTTATGCTCATGAT
CTGAAATATGGAAAGGAAACGGAAAAGTCAGCAGATATTCAATGTACATC
ACGTATCCCAGATACACGTGTCGCATATAGGATGTATGTGTTGTGTTACC
GTTTCACACCGTCCTGCCATTATTTCATGGCTAATACGCGGAAAAGGAGA
CTCGATTATTACATCGATTAGGAGAAATTCATGAAACCTTCGACACTTCT
TACGAGCTACCAGCTGGTTAATGCACTTGAATAGTGCGACAGGCCATCCG
CAGTCGATGAAGTAATTGGAATCCCTAGCTGCAGACGAGCGTATACATAG
ACGTGCTGTATCAGCGTATCCATTGACGTGCTGTATCGTAGGACAGCAAC
GAAATTATTGTCTGCGGTGTGGATATGGATGTATGTGGCAGACGAGCACC
GATGAATCTAGTGTTGTGTTGATCGTCGTGGGTTGTGAGTCTTGTTGCTA
CCGCACTGTTGCTCGGATGCTGCAGCGATTAAAATTGAATGTAATAATAT
TGATAACAGAAATGAACTCGAATATGTGATGTGTGTCAACTTGTTGCACT
CGACGTAAAATGCAGACGCAATAAAGAGGTGGTGGCGCTAGTATGGTGGG
ATCCTTAGTGCTGCGAGAATACGCTATGGAGTGCTTGTCACGTACATAAT
GACCACAGTTGTATATCGTTGTCCCTACACAGTCGATGACGGGAACTACT
AGTAAACGTGTTGCACTTGATCTCGTGGAGAGAAATGGTGATAATTGCTC
AATTGACTACTGAGCTCTGTACCATGACCTCTCGACAAGGGTCCACGATC
TTTGCGTAACATGTATTTCTCTCACTCCTTGTGGGCCACAGGCGGAGTGA
TCGTGGCTCGACCAGCGAAATCTTCAGCAGCACAAAAGATAAACAAGCCC
TTGGGGCAAGAATCGTTCAGGCGAATTAGGGATGCGCGGCAGCTTTTGGA
TCGCGTCGACGTACCCTTACGAGCGCGAAATTTCGATGAAGTTCAGGTAC
ACAAGCTGGTGTAGAAGCTAGCATTTGACCGCAGTGGAGTTCACCGTTGG
ATTGTGCTGGAAGACCTAATCAGATCGTCGTGTATAAGTCCGGATGACGG
CGCGTGACTTGTCAGGCGTATAAGGGGCATAGAACAAGCATAGACCCTAC
TAGGACAGGCGTTTCTCTCACAACCTCTTCTCAACGGTACCTGTAACAGT
GTTTTATGTTGATGTGGCTGGCATTGACGATTTAGGTGTAGTATTTAGTG
TAATCACAATATATTATGCGCCGAAGGACGGTTAGATACACCGTGTAGTC
GAGTACATTACTTCCAGTCTTTGTTGCTGCCGGTCTTGCGTTGATGAGTC
TCGACAGTGGCGACCACGCTCAAGTCAGCATGAAGGACGGCGGTATCTAC
CCGCGGTTGTTTCATCATTGAGCTGAAAGGGCGGCGGCCTGGAAATATTT
AGGGGGGGGGGTAGCTGCTGATCAGAACTGGTCAGAAATGGCGCCAGCCG
AGCAACAAAGTTCCTCCTCCTGGCTGTAACACAACCGCAGTTGAGTGTTC
GGTTGCAACTCCCAAGGCGGTGCTCGAACACTTGAGGTTATTGGGGTGTC
TGCTCAGCGACTTGACATGTTATACCAGCTCATGGCGTGGCTTTAGTATG
GTGGCGTCCACTTGAATCAGCACGTTCTGAATTGTCGATTATCGTTGCAC
GAAAATAACAGGAATTGTTGGAAGACCCTGCGTCGTCGAAGCTGGACAAG
GCTCTTACAGACCTCGTGCAATCGAACGTCTTGCCAAGCGATGACAAGGT
TTCCGTGGGTACCATTCGAACGTGAGATTAGCAACCTTAAATGCGACATT
AGTCAAACGTGACATGTGCTTTTGACCATAAAGACGATTTCCTTGCGTTA
TCCTCGAAGTGTTAGACACAGGGTGACGTGAAAAAATATAACCGGTTACA
ATGTTACAAGATTCACGAACGCTGGTACATATGGTCTAGCTGCCACCGAC
GTTGCACGATGCATCCATCATTCTCTTTGGCAAAAACCAAATCCAGGCGC
GGAAACCTAGTTTCATTTTTACTGCATTTGTATTCTTCGCTAGTTCATGA
ATTTTTAGACTGCGGCCCAGACGACAATGCCCACGTTGATCCCTTGATGA
GCGAGCATAGTTTTGGCTAATTAATGAAAGTTCGATATCTAATCTATGAA
TGATATGTTCGGGGCTCGAAGCCTGTACTTGTGGTGTATGTGCACCTTCC
TGCTCGTTCCGAGCTCCATGACCCAGTCATGGTGCTATGGACGCCTGTCT
TCTTCGCTTCTATCGTTATCGCGTTACTGCTAATAGGTATGGTTTGGCAG
CAGATGCGTTGATTACGCTCGGGGGACTCTCTGCTGCGACGCGAGATGGG
GATGGGGGTGAAGCGCGAAAGATGCTAGTTTTGACTAAAGAGGCCCTCAA
CGACATTCTCACCATCGGCGTCAACAACGATCTCAACAGGACATAAGACC
TGTCACATGTTTGTGATATAATATTGTTTTAGGCATCGCCTGTGAGAACA
CAGTTGTGTCGCCAGTCCGCGGCATCAACGATCCGACACTTCTAGGGAGA
TGGATGGCGACTGTGAGCGGATTGCTGGATGGCTTGCGTTTTTCATCAAG
CTGGAGATCGAAAGGACTGGGCAGACCATACAGGGCGGTATCACGATTTT
CTCCCGTCCATTTTCGTTGAGATATTTGCCGAGTAGATGACTGGATGTGG
AATTCATTGAAACTAAATGCAGGACAGTGAGCGCGAGAACACACTCATCT
GCGAGGTACCGTACCGGTCTGGAGTTGAGAAATTGAAAGATATGAATTTT
CCATTTGATTTTTTTTAATTGAATTTTCCATTGAGAAATCGGGCTTGAAT
GTGATAGGCAAACATGAAACCGCCAGATGAATAACGAGCTGAATATATAG
CTGTCATCGATTAGATACATGAGCATGGAATAGGTGTGGGCGAAAGGAGA
GACCTCATCCATGTACCTGTTTCTGTTGATATAATTACTTTTTCCTTCGT
CGCGGATTTATTCATATATCGAAACACCTGACCTCTGGCTTGTAATGCCA
GGGTTCTTCGCCTTAAATTATCGCGCGGTGGGGAGCCTAGACAAAAAACC
ATCGTTCTTGGCACGGAGTTGCACCAAGGGGTCGGAAGAGGCAAAATGTC
GACCCCTCGAGAGAAAGGGCGGGAAGGGAACAACTTCCGAACGTTCGCAA
CCTTGTTCATCAGCCAGGATGAGTGTGATTGCTTCGCAAGTGTTGGAATC
TGGCAGCATTGGTGGTATTGAGTGAGATAAATGTACATGTACACAACGGA
CCTACGCCCGAACGGATAGGGTACCTCGTGAACTGACCATGTCTGGAAGT
CTAATCAGAGGTCTTTGAGTGGGTGCAACCCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3838:2..3884- >mRNA_H-paniculata_contig3838.10051.1 ID=mRNA_H-paniculata_contig3838.10051.1|Name=mRNA_H-paniculata_contig3838.10051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig3838:2..3884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCTTGCTTCGGGAGGATCATGCGGTTTCTCGTCCAAGCATCTGC
GGCATTGGTGCTCTTCCCCTTGGCAAATGGTTTTTCAATGAACCTAGCGC
GAAGTCCTGGGAAAGTACAAAGAGGAACAACTAGTAGGCATGAAATCATC
GAGCAATTTGTAAAAATTGCCTCTGGGACATTCGCAGATGCGCCCTTGCT
TCGGGAGGATCATGCGGTTTCTCGTCCAAGCATCTGCGGCATTGGTGCTC
TTCCCCTTGGCAAATGGTTTTTCAATGAACCTAGCGCGAAGTCCTGGGAA
AGTACAAAGAGGAACAACTAGTAGGCATGAAATCATCGAGCAATTTGTAA
AAATTGCCTCTGGGACATTCGCAGGCGGAGTGATCGTGGCTCGACCAGCG
AAATCTTCAGCAGCACAAAAGATAAACAAGCCCTTGGGGCAAGAATCGTT
CAGGCGAATTAGGGATGCGCGGCAGCTTTTGGATCGCGTCGACGTACCCT
TACGAGCGCGAAATTTCGATGAAGTTCAGGCGGAGTGATCGTGGCTCGAC
CAGCGAAATCTTCAGCAGCACAAAAGATAAACAAGCCCTTGGGGCAAGAA
TCGTTCAGGCGAATTAGGGATGCGCGGCAGCTTTTGGATCGCGTCGACGT
ACCCTTACGAGCGCGAAATTTCGATGAAGTTCAGGAATTGTTGGAAGACC
CTGCGTCGTCGAAGCTGGACAAGGCTCTTACAGACCTCGTGCAATCGAAC
GTCTTGCCAAGCGATGACAAGGTTTCCGTGGGTACCATTCGAACGAATTG
TTGGAAGACCCTGCGTCGTCGAAGCTGGACAAGGCTCTTACAGACCTCGT
GCAATCGAACGTCTTGCCAAGCGATGACAAGGTTTCCGTGGGTACCATTC
GAACGTATGGTTTGGCAGCAGATGCGTTGATTACGCTCGGGGGACTCTCT
GCTGCGACGCGAGATGGGGATGGGGGTGAAGCGCGAAAGATGCTAGTTTT
GACTAAAGAGGCCCTCAACGACATTCTCACCATCGGCGTCAACAACGATC
TCAACAGGACATAAGTATGGTTTGGCAGCAGATGCGTTGATTACGCTCGG
GGGACTCTCTGCTGCGACGCGAGATGGGGATGGGGGTGAAGCGCGAAAGA
TGCTAGTTTTGACTAAAGAGGCCCTCAACGACATTCTCACCATCGGCGTC
AACAACGATCTCAACAGGACATAA back to top
|