mRNA_H-paniculata_contig38362.10048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38362.10048.1
Unique NamemRNA_H-paniculata_contig38362.10048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 8.970e-18
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A+VW  +M +EFEGL+ AG FS   +VP GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  165 PEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARL 235          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.120e-17
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  211 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 281          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.140e-17
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  416 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 486          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.150e-17
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  480 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 550          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.150e-17
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  624 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 694          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.160e-17
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  830 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 900          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-16
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  S++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I + K+R+
Sbjct:  806 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARL 876          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.040e-16
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            PEP S+  A  +++A +W ++M +E EGLI AG F+   ++P+GCNV+D++WV+KWK D  G I +AK+R+
Sbjct:  144 PEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 214          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JFT6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.580e-16
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 EPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            EP S+  A  S+Y+ +W ++M +EFEGL+ AG F+   +VP GCNVVD++WVYKWK    G + +AK+R+
Sbjct:   39 EPGSYKEARQSKYSSIWDKTMSAEFEGLLRAGTFALAVKVPIGCNVVDARWVYKWKAHETGKLVKAKARL 108          
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KFW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.010e-16
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 EPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
            EP S+  A  S++A +  ++M +EFEGL+ AG F+   + P GCNV+D++WVYKWK D  G I +AK+R+
Sbjct:   30 EPGSYREARQSKHAVISDKAMPAEFEGLLRAGTFALAVKAPMGCNVIDARWVYKWKADETGKIVKAKARL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE8.970e-1852.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE3.120e-1747.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE3.140e-1747.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE3.150e-1747.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE3.150e-1747.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE3.160e-1747.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.100e-1646.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE2.040e-1646.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT6_9PHAE2.580e-1648.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFW5_9PHAE7.010e-1647.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38362contigH-paniculata_contig38362:1560..1778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue6e-08
Seed eggNOG ortholog4538.ORGLA03G0406500.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930179.3052578-CDS-H-paniculata_contig38362:1559..17781622930179.3052578-CDS-H-paniculata_contig38362:1559..1778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38362 1560..1778 +
1691481179.5124865-CDS-H-paniculata_contig38362:1559..17781691481179.5124865-CDS-H-paniculata_contig38362:1559..1778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38362 1560..1778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38362.10048.1prot_H-paniculata_contig38362.10048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38362 1560..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38362.10048.1

>prot_H-paniculata_contig38362.10048.1 ID=prot_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDS
KWVYKWKCDPQGMIDRAKSRMY*
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mRNA from alignment at H-paniculata_contig38362:1560..1778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38362.10048.1 ID=mRNA_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig38362:1560..1778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGAGCCTAGATCCTTTCCTGCTGCATGCGCCTCACAGTACGCCGACGT ATGGAAGGAGTCGATGGATTCAGAATTTGAGGGACTTATAGCAGCAGGAG TTTTTTCTGAAGTAAAAGAGGTGCCAAAGGGATGTAATGTTGTGGATTCG AAGTGGGTGTACAAGTGGAAGTGTGATCCACAGGGCATGATTGACAGAGC AAAATCTAGAATGTATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38362:1560..1778+

>mRNA_H-paniculata_contig38362.10048.1 ID=mRNA_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig38362:1560..1778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGAGCCTAGATCCTTTCCTGCTGCATGCGCCTCACAGTACGCCGACGT
ATGGAAGGAGTCGATGGATTCAGAATTTGAGGGACTTATAGCAGCAGGAG
TTTTTTCTGAAGTAAAAGAGGTGCCAAAGGGATGTAATGTTGTGGATTCG
AAGTGGGTGTACAAGTGGAAGTGTGATCCACAGGGCATGATTGACAGAGC
AAAATCTAGAATGTATTGACCGGAGCCTAGATCCTTTCCTGCTGCATGCG
CCTCACAGTACGCCGACGTATGGAAGGAGTCGATGGATTCAGAATTTGAG
GGACTTATAGCAGCAGGAGTTTTTTCTGAAGTAAAAGAGGTGCCAAAGGG
ATGTAATGTTGTGGATTCGAAGTGGGTGTACAAGTGGAAGTGTGATCCAC
AGGGCATGATTGACAGAGCAAAATCTAGAATGTATTGA
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