mRNA_H-paniculata_contig38362.10048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 8.970e-18 Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A+VW +M +EFEGL+ AG FS +VP GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 165 PEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARL 235
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.120e-17 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 211 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 281
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.140e-17 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 416 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 486
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.150e-17 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 480 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 550
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.150e-17 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 624 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 694
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.160e-17 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 830 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 900
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.100e-16 Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A S++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I + K+R+
Sbjct: 806 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARL 876
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.040e-16 Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
PEP S+ A +++A +W ++M +E EGLI AG F+ ++P+GCNV+D++WV+KWK D G I +AK+R+
Sbjct: 144 PEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARL 214
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5JFT6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT6_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.580e-16 Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 EPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
EP S+ A S+Y+ +W ++M +EFEGL+ AG F+ +VP GCNVVD++WVYKWK G + +AK+R+
Sbjct: 39 EPGSYKEARQSKYSSIWDKTMSAEFEGLLRAGTFALAVKVPIGCNVVDARWVYKWKAHETGKLVKAKARL 108
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Match: A0A6H5KFW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW5_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.010e-16 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 4 EPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSKWVYKWKCDPQGMIDRAKSRM 213
EP S+ A S++A + ++M +EFEGL+ AG F+ + P GCNV+D++WVYKWK D G I +AK+R+
Sbjct: 30 EPGSYREARQSKHAVISDKAMPAEFEGLLRAGTFALAVKAPMGCNVIDARWVYKWKADETGKIVKAKARL 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38362.10048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig38362.10048.1 >prot_H-paniculata_contig38362.10048.1 ID=prot_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp PEPRSFPAACASQYADVWKESMDSEFEGLIAAGVFSEVKEVPKGCNVVDSback to top mRNA from alignment at H-paniculata_contig38362:1560..1778+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig38362.10048.1 ID=mRNA_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig38362:1560..1778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig38362:1560..1778+ >mRNA_H-paniculata_contig38362.10048.1 ID=mRNA_H-paniculata_contig38362.10048.1|Name=mRNA_H-paniculata_contig38362.10048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig38362:1560..1778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |