mRNA_H-paniculata_contig38280.10030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.900e-34 Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD-STGKEIT 432
GVR+F+LDE ++THLLA++ FRP G T + KWV+QVL Q +EDIAGAVTDAG++V GV A+ W+WC+PH LNR T DG+GM K+ SKN CR L+E IK + HFNKS+A K LE+ I + S GK T
Sbjct: 165 GVRVFYLDEKMNVKTHLLAIRGFRPP----GAQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRKGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGST 305
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI) HSP 1 Score: 143 bits (361), Expect = 8.040e-34 Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD-STGKEIT 432
GVR+F+LDE ++THLLA++ FRP G T + KWV+QVL Q +EDIAGAVTDAG++V GV A+ W+WC+PH LNR T DG+GM K+ SKN CR L+E IK + HFNKS+A K LE+ I + S GK T
Sbjct: 165 GVRVFYLDEKMNVKTHLLAIRGFRPP----GAQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRKGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGST 305
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE) HSP 1 Score: 136 bits (343), Expect = 7.500e-32 Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKL 393
GVRIF++ E LR++LLAVKLF+P S L G T + +WV QVL Q D AGAV+DAG++V SGV +F+ +WC+PH+LNR T DG+G+A T +LSKNL CR L+E+ +V +HFN+SS K L
Sbjct: 4 GVRIFYMTEIMILRSYLLAVKLFQPCSAL-GPTTGTVVMEWVVQVLAQHGLRPSDFAGAVSDAGSDVSSGVVKSFSREWCLPHMLNRATIDGTGLANTTRLSKNLDCRALLEDAMKVIQHFNRSSRDKVSL 133
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE) HSP 1 Score: 135 bits (340), Expect = 4.190e-31 Identity = 72/135 (53.33%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSI 405
VRIF++D LRTHLLAVKLFRPA L GKVT K+ KW QVL Q E +AGAVTD G +V +G+G WC PH+LNR+ DG+GMA T SKNL CR L+E K+V +H N+S K +LED++
Sbjct: 82 AVRIFYIDSSGFLRTHLLAVKLFRPAPSL-GKVTGKVVLKWFLQVLGQHGIPIERLAGAVTDGGGDVRTGIGQVATRAWCGPHMLNRVIIDGTGMANTANQSKNLSCRGLMEICKKVVQHVNRSQGFKIELEDTL 215
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.190e-28 Identity = 59/140 (42.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELV---GKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD 411
GVR+ +++E+ +++ +L VKLFRP + GK+T ++ KW QVL Q E+ AGAV+D+G++V +G+ AF +WCIPH++NR+T DG+GM+ + SKN CR L+E++K++ +HFN+SS K L+D + +
Sbjct: 305 GVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEE 444
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.270e-28 Identity = 59/140 (42.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELV---GKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD 411
GVR+ +++E+ +++ +L VKLFRP + GK+T ++ KW QVL Q E+ AGAV+D+G++V +G+ AF +WCIPH++NR+T DG+GM+ + SKN CR L+E++K++ +HFN+SS K L+D + +
Sbjct: 226 GVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEE 365
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.640e-23 Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMDSTGKEITRSFAGRGLV 459
GVRIF++ E+ LR++LLAVKLF+P S L G T + KWV QVL Q GVG F +WC+PH+LNR T DG+GMA T +LSKNL CR L+E+ K V +HFN+SS K + D +++ +++ RG +
Sbjct: 335 GVRIFYMTENMILRSYLLAVKLFQPCSAL-GPTTGTVVMKWVVQVLAQH--------------------GVGKGFGREWCLPHMLNRATIDGTGMANTTRLSKNLDCRALLEDAK-VIQHFNRSSRDKIAM-DEYLEAVLEDLGNGDVPRGKL 464
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 9.160e-16 Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVG-KVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFN--WKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMDSTGKEI 429
G+R+F F L + L+AVKLF+P+++L K S + WV++VL++F + VTDAG++V W+WC PH+LN + + G ++ KNL R +++ +K+V EH NKS+ K + +D + GK +
Sbjct: 264 GLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNLGARQVIDTVKKVVEHLNKSTLMKARYDDIQVLLYGKSM 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig38280.10030.1 >prot_H-paniculata_contig38280.10030.1 ID=prot_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRback to top mRNA from alignment at H-paniculata_contig38280:2..1727- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig38280.10030.1 ID=mRNA_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1726bp|location=Sequence derived from alignment at H-paniculata_contig38280:2..1727- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig38280:2..1727- >mRNA_H-paniculata_contig38280.10030.1 ID=mRNA_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig38280:2..1727- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |