mRNA_H-paniculata_contig38280.10030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38280.10030.1
Unique NamemRNA_H-paniculata_contig38280.10030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.900e-34
Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD-STGKEIT 432
            GVR+F+LDE   ++THLLA++ FRP     G  T  +  KWV+QVL Q    +EDIAGAVTDAG++V  GV  A+ W+WC+PH LNR T DG+GM   K+ SKN  CR L+E IK +  HFNKS+A K  LE+ I + S GK  T
Sbjct:  165 GVRVFYLDEKMNVKTHLLAIRGFRPP----GAQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRKGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGST 305          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 8.040e-34
Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD-STGKEIT 432
            GVR+F+LDE   ++THLLA++ FRP     G  T  +  KWV+QVL Q    +EDIAGAVTDAG++V  GV  A+ W+WC+PH LNR T DG+GM   K+ SKN  CR L+E IK +  HFNKS+A K  LE+ I + S GK  T
Sbjct:  165 GVRVFYLDEKMNVKTHLLAIRGFRPP----GAQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVRKGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKIALEEIIDEMSQGKGST 305          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.500e-32
Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKL 393
            GVRIF++ E   LR++LLAVKLF+P S L G  T  +  +WV QVL Q      D AGAV+DAG++V SGV  +F+ +WC+PH+LNR T DG+G+A T +LSKNL CR L+E+  +V +HFN+SS  K  L
Sbjct:    4 GVRIFYMTEIMILRSYLLAVKLFQPCSAL-GPTTGTVVMEWVVQVLAQHGLRPSDFAGAVSDAGSDVSSGVVKSFSREWCLPHMLNRATIDGTGLANTTRLSKNLDCRALLEDAMKVIQHFNRSSRDKVSL 133          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.190e-31
Identity = 72/135 (53.33%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSI 405
             VRIF++D    LRTHLLAVKLFRPA  L GKVT K+  KW  QVL Q     E +AGAVTD G +V +G+G      WC PH+LNR+  DG+GMA T   SKNL CR L+E  K+V +H N+S   K +LED++
Sbjct:   82 AVRIFYIDSSGFLRTHLLAVKLFRPAPSL-GKVTGKVVLKWFLQVLGQHGIPIERLAGAVTDGGGDVRTGIGQVATRAWCGPHMLNRVIIDGTGMANTANQSKNLSCRGLMEICKKVVQHVNRSQGFKIELEDTL 215          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.190e-28
Identity = 59/140 (42.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELV---GKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD 411
            GVR+ +++E+  +++ +L VKLFRP   +    GK+T ++  KW  QVL Q     E+ AGAV+D+G++V +G+  AF  +WCIPH++NR+T DG+GM+ +   SKN  CR L+E++K++ +HFN+SS  K  L+D + +
Sbjct:  305 GVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEE 444          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.270e-28
Identity = 59/140 (42.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELV---GKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMD 411
            GVR+ +++E+  +++ +L VKLFRP   +    GK+T ++  KW  QVL Q     E+ AGAV+D+G++V +G+  AF  +WCIPH++NR+T DG+GM+ +   SKN  CR L+E++K++ +HFN+SS  K  L+D + +
Sbjct:  226 GVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRREWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKILLDDELEE 365          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.640e-23
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMDSTGKEITRSFAGRGLV 459
            GVRIF++ E+  LR++LLAVKLF+P S L G  T  +  KWV QVL Q                     GVG  F  +WC+PH+LNR T DG+GMA T +LSKNL CR L+E+ K V +HFN+SS  K  + D  +++  +++      RG +
Sbjct:  335 GVRIFYMTENMILRSYLLAVKLFQPCSAL-GPTTGTVVMKWVVQVLAQH--------------------GVGKGFGREWCLPHMLNRATIDGTGMANTTRLSKNLDCRALLEDAK-VIQHFNRSSRDKIAM-DEYLEAVLEDLGNGDVPRGKL 464          
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.160e-16
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    1 GVRIFHLDEDFTLRTHLLAVKLFRPASELVG-KVTSKLATKWVKQVLRQFRPTEEDIAGAVTDAGTNVVSGVGWAFN--WKWCIPHLLNRITTDGSGMALTKKLSKNL*CRVLVEEIKRVHEHFNKSSASKTKLEDSIMDSTGKEI 429
            G+R+F     F L + L+AVKLF+P+++L   K  S +   WV++VL++F      +   VTDAG++V           W+WC PH+LN +  +  G   ++   KNL  R +++ +K+V EH NKS+  K + +D  +   GK +
Sbjct:  264 GLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNLGARQVIDTVKKVVEHLNKSTLMKARYDDIQVLLYGKSM 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38280.10030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G3L2_ECTSI1.900e-3452.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Z8_ECTSI8.040e-3452.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHQ8_9PHAE7.500e-3252.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP19_9PHAE4.190e-3153.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z1_9PHAE2.190e-2842.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE2.270e-2842.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7T5_9PHAE2.640e-2342.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVU5_9PHAE9.160e-1633.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38280contigH-paniculata_contig38280:2..1727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7G3L2
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1180
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38280.10030.1prot_H-paniculata_contig38280.10030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38280 1410..1727 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930176.307004-UTR-H-paniculata_contig38280:1..5931622930176.307004-UTR-H-paniculata_contig38280:1..593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 2..593 -
1691481178.1480699-UTR-H-paniculata_contig38280:1..5931691481178.1480699-UTR-H-paniculata_contig38280:1..593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 2..593 -
1622930176.323842-UTR-H-paniculata_contig38280:943..11471622930176.323842-UTR-H-paniculata_contig38280:943..1147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 944..1147 -
1691481178.1613564-UTR-H-paniculata_contig38280:943..11471691481178.1613564-UTR-H-paniculata_contig38280:943..1147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 944..1147 -
1622930176.3351614-UTR-H-paniculata_contig38280:1343..14091622930176.3351614-UTR-H-paniculata_contig38280:1343..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 1344..1409 -
1691481178.1740084-UTR-H-paniculata_contig38280:1343..14091691481178.1740084-UTR-H-paniculata_contig38280:1343..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38280 1344..1409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930176.3535502-CDS-H-paniculata_contig38280:1409..17271622930176.3535502-CDS-H-paniculata_contig38280:1409..1727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38280 1410..1727 -
1691481178.1879394-CDS-H-paniculata_contig38280:1409..17271691481178.1879394-CDS-H-paniculata_contig38280:1409..1727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38280 1410..1727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38280.10030.1

>prot_H-paniculata_contig38280.10030.1 ID=prot_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
GVRIFHLDEDFTLRTHLLAVKLFRPASELVGKVTSKLATKWVKQVLRQFR
PTEEDIAGAVTDAGTNVVSGVGWAFNWKWCIPHLLNRITTDGSGMALTKK
LSKNL*
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mRNA from alignment at H-paniculata_contig38280:2..1727-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38280.10030.1 ID=mRNA_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1726bp|location=Sequence derived from alignment at H-paniculata_contig38280:2..1727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTGCGTATCTTCCACCTCGACGAGGACTTCACGCTCCGAACGCACCT GCTTGCGGTCAAGCTATTCCGTCCAGCATCAGAACTCGTCGGGAAAGTGA CTAGCAAACTTGCCACGAAGTGGGTGAAGCAGGTTCTCCGACAGTTCCGG CCCACTGAGGAGGACATTGCCGGCGCCGTCACCGACGCGGGCACGAACGT CGTGAGTGGGGTCGGTTGGGCCTTTAACTGGAAGTGGTGCATTCCGCACC TACTGAACCGCATCACAACGGACGGGTCTGGTATGGCACTAACGAAAAAA CTGTCCAAGAACTTGTAGTGCCGCGTTCTGGTAGAGGAGATAAAGAGGGT ACATGAGCATTTCAACAAATCTTCTGCCTCTAAGGTAAGCTGGGTGTCAG GCCGGAGTCAGTGTCATTTATCCTGTATATGCCTTCATTGCTATCAGCGA TGCGTGTGCGGAGCGCCGAAAAAATGTGCCCACGTTTTGTGTCAATGCTC AATGCTCTGCGCGCGCCCACCACATCATTCGGCAAAGGCTAATTGGGTCC TGTTGCCTGCCCTTCCTTCATGCGTTCTAGACCAAATTGGAGGACAGCAT CATGGATTCAACGGGGAAAGAGATAACGCGAAGCTTCGCCGGGCGGGGCC TTGTCGGTGGGTGAGTCCGGCGAAATCAATGGCGAGCACGCTGCAACAAT CGGCCGGCATCGAGCTTCTGTACAACAGTATCAAGAAGCAAGTGTGTCCC CTCGCTGCACGGAAGACAGAGGTACGAGAGTATCGTTCTTTCATCATTTC CGATTTCGATTTGATTTTGATGAAGTATTTCAACTCGTGTGCCTTCTCCG CCTGGCACTGAGAGATTAGAACTAAAAAAAATTTGCCCGAATTGTAATTT GCATACTATCCAAAATAAATAAAATAAAGTAGGGAGATTCTTCTAGATCA TGTACGAAGTATATTTTCACAGTCTTAGACCTCAAATTTTAAGTGGTCTT CGAACTGAAATTGATTCATTAAAATCTAAAAAGAACTGTAGATTTTTTCC AAGAACTTTTAATGCTGTGTTGCAGCGAATGCCATCAATGCGTTGAGTAA ATTGTTACATTGACTCCCCGTTGTATTTTCGCAGACAAATGGAGGAGGTG TACAACATTGTGAAGGCCGTCAAGGACGTCACCGAGTACTGCCAATCTAC CTCGGTGGTAACCGCACCGGAAGCGCTGTCATAATTTGTGATTCTCATGA CGGCGATCCTCGATCCTTTATCTTTTCTCCAAGTCGTCCACCTCCGGCAA CTCGGTGCAGGAAAGGACAAGGGCGCAGTGGTCACAGAGGAGTGAGCCGC TGAAGATTTACCGCCGTTGGCGACGTCAACAAGGCGGGCCTTTCACGCCG CTATCGCGAAGCTCGTCGCGAATCTGCGGTACGGATCTGGTGCGAAGTCG CCTAGTCTTAGTTTTGACATGGCGGTCGCAATGTGTCCAAGCTTGCGCGG CTTGAAGCACAATTCGGAAGTAAAGAACGCGGCAATCAGCAGGACAGGCG AGGTCACGAGAGCCGCCGTTACCACCGAGGCAAATGTGTGGATGAAGATC ACAAACTTTTCTTATGACGTCATCGAAGTGCAAGAGGCACGCAACGCGGT AGACATCCACGGACCTACGCCCGAATGGGTAGGGTAGCTCGTGTACTGAG CATGACTGGAAGTCTAGTCAAGGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig38280:2..1727-

>mRNA_H-paniculata_contig38280.10030.1 ID=mRNA_H-paniculata_contig38280.10030.1|Name=mRNA_H-paniculata_contig38280.10030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig38280:2..1727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTGCGTATCTTCCACCTCGACGAGGACTTCACGCTCCGAACGCACCT
GCTTGCGGTCAAGCTATTCCGTCCAGCATCAGAACTCGTCGGGAAAGTGA
CTAGCAAACTTGCCACGAAGTGGGTGAAGCAGGTTCTCCGACAGTTCCGG
CCCACTGAGGAGGACATTGCCGGCGCCGTCACCGACGCGGGCACGAACGT
CGTGAGTGGGGTCGGTTGGGCCTTTAACTGGAAGTGGTGCATTCCGCACC
TACTGAACCGCATCACAACGGACGGGTCTGGTATGGCACTAACGAAAAAA
CTGTCCAAGAACTTGTAGGGTGTGCGTATCTTCCACCTCGACGAGGACTT
CACGCTCCGAACGCACCTGCTTGCGGTCAAGCTATTCCGTCCAGCATCAG
AACTCGTCGGGAAAGTGACTAGCAAACTTGCCACGAAGTGGGTGAAGCAG
GTTCTCCGACAGTTCCGGCCCACTGAGGAGGACATTGCCGGCGCCGTCAC
CGACGCGGGCACGAACGTCGTGAGTGGGGTCGGTTGGGCCTTTAACTGGA
AGTGGTGCATTCCGCACCTACTGAACCGCATCACAACGGACGGGTCTGGT
ATGGCACTAACGAAAAAACTGTCCAAGAACTTGTAG
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