mRNA_H-paniculata_contig38086.9988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38086.9988.1
Unique NamemRNA_H-paniculata_contig38086.9988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A2D4BRF6_PYTIN (HRDC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRF6_PYTIN)

HSP 1 Score: 65.5 bits (158), Expect = 2.180e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F DP   +VLHG+DSDILWLQRDL LYVVNMFDTGQ +
Sbjct:  328 FCDPARVKVLHGADSDILWLQRDLGLYVVNMFDTGQAA 365
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A7S3TXA6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TXA6_9SPIT)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F+DP   +VLHGSD DILWLQRD S+YVVNMFDTGQ +
Sbjct:  100 FADPRIVKVLHGSDRDILWLQRDFSVYVVNMFDTGQAT 137
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.050e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            FSDP   +V HGSDSD+LWLQRDL LY+VNMFDTGQ +
Sbjct:  382 FSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDTGQAA 419
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A9V5N1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5N1_MONBE)

HSP 1 Score: 64.7 bits (156), Expect = 4.060e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F+DP   +VLHG+DSDILWLQRD SLY+VNMFDTGQ +
Sbjct:  334 FADPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQAT 371
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A8K1FMG7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMG7_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 4.070e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F DP   +VLHGSD DILWLQRDL LYVVNMFDTGQ +
Sbjct:  329 FCDPAKVKVLHGSDMDILWLQRDLGLYVVNMFDTGQAA 366
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: UPI000900AA09 (protein RRP6-like 1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000900AA09)

HSP 1 Score: 61.6 bits (148), Expect = 4.860e-11
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQV 111
            F DP  K+V+HG+DSD++WLQRD  +YV N+FDTGQV
Sbjct:   93 FKDPKKKKVMHGADSDVIWLQRDFGIYVCNLFDTGQV 129
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A6G0WF79_9STRA (HRDC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WF79_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.600e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F DP   +VLHG+DSDI+WLQRDL LY+VNMFDTGQ +
Sbjct:  278 FCDPTKLKVLHGADSDIVWLQRDLGLYIVNMFDTGQAA 315
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: UPI001FB0C6D1 (protein RRP6-like 2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C6D1)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F DP  K+V+HGSD DILWLQRD  +Y+ NMFDTGQ S
Sbjct:  332 FKDPTKKKVIHGSDRDILWLQRDFGIYICNMFDTGQAS 369
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A2P6VL24_9CHLO (Exosome component n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VL24_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F+DP   +VLHGSDSDI+WLQRD  LY+VNMFDTGQ +
Sbjct:  306 FADPGVVKVLHGSDSDIVWLQRDYGLYIVNMFDTGQAA 343
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BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Match: A0A418EF36_9STRA (HRDC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EF36_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS 114
            F DP   +VLHG+DSDI+WLQRDL LY+VNMFDTGQ +
Sbjct:  278 FCDPTKLKVLHGADSDIVWLQRDLGLYMVNMFDTGQAA 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38086.9988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BRF6_PYTIN2.180e-1176.32HRDC domain-containing protein n=1 Tax=Pythium ins... [more]
A0A7S3TXA6_9SPIT2.720e-1173.68Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
D8LQE8_ECTSI4.050e-1173.68HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A9V5N1_MONBE4.060e-1173.68Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A8K1FMG7_PYTOL4.070e-1176.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000900AA094.860e-1164.86protein RRP6-like 1 n=1 Tax=Camelina sativa TaxID=... [more]
A0A6G0WF79_9STRA7.600e-1171.05HRDC domain-containing protein n=1 Tax=Aphanomyces... [more]
UPI001FB0C6D11.040e-1068.42protein RRP6-like 2 n=1 Tax=Impatiens glandulifera... [more]
A0A2P6VL24_9CHLO1.410e-1071.05Exosome component n=1 Tax=Micractinium conductrix ... [more]
A0A418EF36_9STRA1.420e-1071.05HRDC domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38086contigH-paniculata_contig38086:563..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.5728116-CDS-H-paniculata_contig38086:562..6761622930170.5728116-CDS-H-paniculata_contig38086:562..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38086 563..676 +
1691481175.7478817-CDS-H-paniculata_contig38086:562..6761691481175.7478817-CDS-H-paniculata_contig38086:562..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38086 563..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38086.9988.1prot_H-paniculata_contig38086.9988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38086 563..676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38086.9988.1

>prot_H-paniculata_contig38086.9988.1 ID=prot_H-paniculata_contig38086.9988.1|Name=mRNA_H-paniculata_contig38086.9988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
FSDPIAKQVLHGSDSDILWLQRDLSLYVVNMFDTGQVS
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mRNA from alignment at H-paniculata_contig38086:563..676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38086.9988.1 ID=mRNA_H-paniculata_contig38086.9988.1|Name=mRNA_H-paniculata_contig38086.9988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig38086:563..676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCGATCCGATTGCAAAGCAGGTATTGCATGGATCTGATTCGGATAT
CCTGTGGCTGCAGCGAGACCTCTCTCTGTACGTCGTCAACATGTTCGACA
CTGGCCAGGTATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig38086:563..676+

>mRNA_H-paniculata_contig38086.9988.1 ID=mRNA_H-paniculata_contig38086.9988.1|Name=mRNA_H-paniculata_contig38086.9988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig38086:563..676+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCGATCCGATTGCAAAGCAGGTATTGCATGGATCTGATTCGGATAT
CCTGTGGCTGCAGCGAGACCTCTCTCTGTACGTCGTCAACATGTTCGACA
CTGGCCAGGTATCCTTTTCCGATCCGATTGCAAAGCAGGTATTGCATGGA
TCTGATTCGGATATCCTGTGGCTGCAGCGAGACCTCTCTCTGTACGTCGT
CAACATGTTCGACACTGGCCAGGTATCC
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