mRNA_H-paniculata_contig3788.9940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3788.9940.1
Unique NamemRNA_H-paniculata_contig3788.9940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.720e-58
Identity = 138/301 (45.85%), Postives = 175/301 (58.14%), Query Frame = 3 
Query:  111 MELRAHCETSAVLKACLVAAQYVGIGSSITTKIDGSLSTTDVVLRTSN--GEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEGTSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRVAGHAS-LTPAISRWMNTCRNQSEFLLALEAHNRDSKVTTLDLNASTSRGLPDVNVEADVPKV-EPKLMAEFDQGNAALDKIKELRIEAMLYEHVAAFTVEEQGVALGSLAGVKTKNLFFKDKKAGLILVTVRHDRPCDTKTLAKLLGLAGKVSI 1001
            MELRA  + SA  KACLVA +Y G+  ++   +D + +  DVVLR     G+V+G  AVLR+IG L P A + G  D E  LVD+W++FA+   A             +   + L++ L   TFLA QRVT+AD+AV C M       GHA  LTPA++RWM TC NQ  F   ++             +A               P   EPKL+  F++GN +LDK+KEL IE  L+EH  A TV EQ +AL  ++G KTKNLF KDKKAGLILVTVRHDRP D KTLAKLLG  GKVS+
Sbjct:    1 MELRASAKCSAAAKACLVAGRYAGV--TLAEVVDDTAA--DVVLRLGGDAGDVQGAEAVLRHIGGLNPSALLAGDGDAERSLVDEWLKFASTMQA----------GDVSAATAALEKRLEQNTFLAGQRVTLADVAVCCKM------IGHAEGLTPAVARWMGTCVNQPHFKAVVDGS-----------SAXXXXXXXXXXXXXXTPVFSEPKLLDGFEEGNKSLDKLKELGIEGALFEHHRAMTVPEQEMALRGVSGDKTKNLFLKDKKAGLILVTVRHDRPTDMKTLAKLLGFPGKVSL 270
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.510e-42
Identity = 111/289 (38.41%), Postives = 158/289 (54.67%), Query Frame = 3 
Query:  147 LKACLVAAQYVGIGSSI---TTKIDGSLSTTDVVLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEGTSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRVAGHASLTPAISRWMNTCRNQSEFL-LALEAHNRDSKVTTLDLNASTSRGLPDVNVEADVPKVEPKLMAEFDQGNAALDKIKELRIEAMLYEHVAAFTVEEQGVALGSLAGVKTKNLFFKDKKAGLILVTVRHDRPCDTKTLAKLLGLAGKVSI 1001
            +K  L AA+Y  +   +       +G+  T+  VL T  G +RG  AVLRY+ RL P + +EGS +F++  VDQW+EFA+NEM ++ G S  AIA    V++ L+ HL + TF+  QR+++AD+ +  A+E    V   A   PA+ R+  T  NQ  F   A +A +R SK       A  ++ L  V                 +  N A+DK+ EL + ++ Y H  A TVEEQ   +GSL G KTKNLF +DKK G+ LVT  HD P DTKT+A LL L    ++
Sbjct:   15 VKLVLAAARYADVTVEVQEAAADAEGNNGTSTAVLTTPQGPIRGLNAVLRYVSRLRPASELEGS-NFQSSQVDQWVEFASNEMCHMAGGSASAIAQQDKVLAALEAHLASRTFVVGQRMSVADMCIAAALEG---VPLAADKQPAVCRFYGTIVNQPLFNGTAKKASSRSSK-------AGKAKQLEQVQ----------------ESENKAIDKLTELGLPSVTYAHAPAMTVEEQMQEIGSLPGAKTKNLFLRDKKHGIYLVTAAHDSPTDTKTIAALLSLPPSANL 276
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BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S2AQM6_9STRA (Proline--tRNA ligase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AQM6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.470e-25
Identity = 90/254 (35.43%), Postives = 119/254 (46.85%), Query Frame = 3 
Query:  255 GEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMA-YLEGTSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRVAGHASLTPA---ISRWMNTCRNQSEFLLALEAHNRDSKVTTLDLNASTSRGLPDVNVEADVPKVEPKLMAEFDQGNAALDKIKELRIEAMLYEHVAAFTVEEQGVALGSLAGVKTKNLFFKDKKAGLILVTVRHDRPC-DTKTLAKLLGLAGKVSI 1001
            G +RG  AVLRYI +       +  +D   G +D W+EFA +E+  + E  +P+ +   +  +S L   L   T+L    +T+ADIAV CA+        +A L P    + RW  TC  Q  F           K  T                    P   P L    + GN A+D +K+L IE   YEH    TV+EQ  A+GSL GV T+NL FKDKK G  LV     R   DTK LAKLL L GK ++
Sbjct:   35 GVIRGDGAVLRYIAKSKSSTSTDSISD---GKIDSWVEFAFHELQLHAEKPAPDDLVTPS--VSALGTFLENRTYLVGDSMTLADIAVCCALSR------YAVLIPTNVNVDRWFRTCTAQPSF-----------KELTQQ------------------PSAAPALAEVDETGNKAIDLLKKLDIEFKTYEHAEVKTVKEQASAVGSLPGVLTRNLLFKDKKHGFFLVVAHESRDTRDTKQLAKLLDLKGKTNL 248
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S0LTB1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTB1_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = 3 
Query:  237 VLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEG---------------TSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRV---AGHASLTPAISRWMNTCRNQSEFLLAL 626
            VL+T +G +    A+ RY+ R+  D  M GS+ +E G VDQWIEFA NE+    G                + +A    A  ++VL  HL A TFLA + VT+AD+ V C++  A ++   A + +  PA+ RW  TC +Q EFL  L
Sbjct:   55 VLQTPDGPLCEAAAIARYVARMRADTNMYGSSFYEAGCVDQWIEFAKNELDLPVGMWIYPILGFISSNAKNTEQAKTELARALAVLQTHLTAHTFLAGEGVTLADVVVVCSLLNAFKLVFDAAYLAPFPALVRWFKTCVSQPEFLAVL 202
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BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: W7TR23_9STRA (Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR23_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.170e-15
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  702 NVEADVPKVEPKLMAEFDQG-NAALDKIKELRIEAMLYEHVAAFTVEEQGVALGSLAGVKTKNLFFKDKKAGLILVTVRHDRPCDTKTLAKLLGLAGKVSI 1001
            ++  D  ++  ++ A  + G NA+L K+KEL +   LY H    T+++Q   LG L GV TKNL  +DKK G  L+TV HDRP DTKT+AKLL L GK ++
Sbjct:   17 SLSLDDKELAKEIEASVEVGENASLGKLKELGVSFKLYSHPETATIDKQAEHLGHLPGVLTKNLLLRDKKIGTFLITVLHDRPTDTKTIAKLLKLGGKANL 117
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S3UIC2_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UIC2_OXYMA)

HSP 1 Score: 85.9 bits (211), Expect = 7.470e-15
Identity = 63/194 (32.47%), Postives = 98/194 (50.52%), Query Frame = 3 
Query:  111 MELRAHCE--TSAVLKACLVAAQYVGIGSSITTKIDGSLSTTD---VVLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATN---EMAYLEGTSPEAIAHAAGVIS-----------VLDQHLLAETFLACQRVTMADIAVFCAM-EAAGRVAGHASLT--PAISRWMNTCRNQSEFLLAL 626
            M  R +C+  +SA LK  L+AA+Y G+   I  K+  + +       +L T  G +    A+ RY+ RL  D  + G    E+G+VD W+EFA+     ++   G S + ++  AG ++           +LD HLL   ++   ++T+ADIA+ CA+ E  G V   A L   P + RW  TC NQ EF+  L
Sbjct:   23 MPFRLYCDPKSSAGLKI-LLAARYNGVELEIPAKVTAAGAPAIGRMPILETDQGSIFSGVAIARYVARLRRDTGLYGQNFVESGVVDSWVEFASEVERPLSTWTGISSKVLSDCAGALAPAKADTDAALTILDNHLLESMYMVGHQITLADIAMCCALLEGMGSVLDPAFLQSKPNLKRWFETCINQPEFVQVL 215
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BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S2UX57_9STRA (Proline--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX57_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.850e-15
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 3 
Query:  753 DQGNAALDKIKELRIEAMLYEHVAAFTVEEQGVALGSLAGVKTKNLFFKDKKAGLILVTVRHDRPCDTKTLAKLLGLAGKVSI 1001
            ++GN AL K++EL I    Y H  AFTVEEQ V +G LAG  TKNL  KDKK G+ +VTV HDR  +T  LAKLL L GK ++
Sbjct:   51 NEGNPALQKLEELGISFTNYSHPLAFTVEEQEVVVGHLAGELTKNLVLKDKKHGMFVVTVVHDRDVNTTVLAKLLKLPGKANM 133
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BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S4F181_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F181_CHRCT)

HSP 1 Score: 87.0 bits (214), Expect = 8.400e-15
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 3 
Query:  237 VLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEG---------------TSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRVAGHASLT---PAISRWMNTCRNQSEF 614
            VL+T+ G +    A++RY+GR+  D  M GS+ FE G VDQW+EFA NE+    G                + +A    A  + VL  HL+  T+L  + +T+AD+ V C++  A ++   A      PA+ RW  TC NQ EF
Sbjct:   73 VLQTAEGAICEAAAIVRYVGRMRADTNMYGSSFFEAGQVDQWVEFAKNELDLPVGMWIYPILGFINSNAKNTQQAKTELARALEVLQGHLVKHTYLVGEAITLADVVVSCSLLNAFKLVFDAEYLKPFPAVVRWFTTCVNQPEF 216
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S4MX07_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MX07_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 4.190e-14
Identity = 56/148 (37.84%), Postives = 73/148 (49.32%), Query Frame = 3 
Query:  237 VLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEM------------AYLEGTSPEAIAHAAGVI---SVLDQHLLAETFLACQRVTMADIAV-FCAMEAAGRV--AGHASLTPAISRWMNTCRNQSEFLLAL 626
            VL T +G +    A+ RY+ RL  D  M G+T FE GLVDQWIEFA NE+             ++E  +         ++   +VL+ HLL  TFL    VT AD+ V  C +     V  A   +  PA+ RW  TC NQ EFL  L
Sbjct:   69 VLETPSGCICEAAAIARYVARLRADTNMYGATFFEAGLVDQWIEFAKNELDLPVGMWIYPVLGFIESNATNTEKAKQDILRAFAVLEAHLLTSTFLVGNGVTAADVIVAMCLLNPFKLVIEAAFVAPFPALVRWFKTCINQPEFLAVL 216
[Close]
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Match: A0A7S2FTG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FTG1_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 5.090e-14
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 3 
Query:  237 VLRTSNGEVRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEG---------------TSPEAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRV---AGHASLTPAISRWMNTCRNQSEFL 617
            VL T  G +    A+ RY+ R+  D  M GS+ FE GLVDQWIEFA NE+    G                + +A    +  ++VL+ +LL  TFLA + +T AD+ V C++  A ++   A + +  P + RW  TC  Q EFL
Sbjct:   72 VLETPEGCLCEAAAIARYVARIRADTNMYGSSFFEAGLVDQWIEFAKNELDLPIGMWIYPILGFINSNDSNTAKAKEDVSRALAVLNAYLLTHTFLAGEGITAADVVVSCSLLNAFKLVFDADYIAPFPCVKRWFTTCVGQQEFL 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3788.9940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI2.720e-5845.85Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YT63_9STRA1.510e-4238.41Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2AQM6_9STRA4.470e-2535.43Proline--tRNA ligase n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S0LTB1_9EUKA1.020e-1637.16Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TR23_9STRA4.170e-1545.54Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3UIC2_OXYMA7.470e-1532.47Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
A0A7S2UX57_9STRA7.850e-1555.42Proline--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4F181_CHRCT8.400e-1535.42Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4MX07_9EUKA4.190e-1437.84Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A7S2FTG1_9EUKA5.090e-1435.86Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3788contigH-paniculata_contig3788:9242..15157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Exons5
Model size1296
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.7693734-UTR-H-paniculata_contig3788:9241..95001622930162.7693734-UTR-H-paniculata_contig3788:9241..9500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3788 9242..9500 -
1691481172.9585347-UTR-H-paniculata_contig3788:9241..95001691481172.9585347-UTR-H-paniculata_contig3788:9241..9500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3788 9242..9500 -
1622930162.8465085-UTR-H-paniculata_contig3788:15047..151571622930162.8465085-UTR-H-paniculata_contig3788:15047..15157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3788 15048..15157 -
1691481173.0188172-UTR-H-paniculata_contig3788:15047..151571691481173.0188172-UTR-H-paniculata_contig3788:15047..15157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3788 15048..15157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.7808516-CDS-H-paniculata_contig3788:9500..96381622930162.7808516-CDS-H-paniculata_contig3788:9500..9638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 9501..9638 -
1691481172.97092-CDS-H-paniculata_contig3788:9500..96381691481172.97092-CDS-H-paniculata_contig3788:9500..9638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 9501..9638 -
1622930162.7912815-CDS-H-paniculata_contig3788:10899..111821622930162.7912815-CDS-H-paniculata_contig3788:10899..11182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 10900..11182 -
1691481172.979346-CDS-H-paniculata_contig3788:10899..111821691481172.979346-CDS-H-paniculata_contig3788:10899..11182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 10900..11182 -
1622930162.8039901-CDS-H-paniculata_contig3788:12297..125151622930162.8039901-CDS-H-paniculata_contig3788:12297..12515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 12298..12515 -
1691481172.98929-CDS-H-paniculata_contig3788:12297..125151691481172.98929-CDS-H-paniculata_contig3788:12297..12515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 12298..12515 -
1622930162.8151512-CDS-H-paniculata_contig3788:12984..130961622930162.8151512-CDS-H-paniculata_contig3788:12984..13096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 12985..13096 -
1691481172.9995031-CDS-H-paniculata_contig3788:12984..130961691481172.9995031-CDS-H-paniculata_contig3788:12984..13096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 12985..13096 -
1622930162.833343-CDS-H-paniculata_contig3788:14871..150471622930162.833343-CDS-H-paniculata_contig3788:14871..15047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 14872..15047 -
1691481173.0095606-CDS-H-paniculata_contig3788:14871..150471691481173.0095606-CDS-H-paniculata_contig3788:14871..15047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3788 14872..15047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3788.9940.1prot_H-paniculata_contig3788.9940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3788 9501..15047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3788.9940.1

>prot_H-paniculata_contig3788.9940.1 ID=prot_H-paniculata_contig3788.9940.1|Name=mRNA_H-paniculata_contig3788.9940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MELRAHCETSAVLKACLVAAQYVGIGSSITTKIDGSLSTTDVVLRTSNGE
VRGRTAVLRYIGRLAPDARMEGSTDFETGLVDQWIEFATNEMAYLEGTSP
EAIAHAAGVISVLDQHLLAETFLACQRVTMADIAVFCAMEAAGRVAGHAS
LTPAISRWMNTCRNQSEFLLALEAHNRDSKVTTLDLNASTSRGLPDVNVE
ADVPKVEPKLMAEFDQGNAALDKIKELRIEAMLYEHVAAFTVEEQGVALG
SLAGVKTKNLFFKDKKAGLILVTVRHDRPCDTKTLAKLLGLAGKVSIFMR
RADGQGYW*
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mRNA from alignment at H-paniculata_contig3788:9242..15157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3788.9940.1 ID=mRNA_H-paniculata_contig3788.9940.1|Name=mRNA_H-paniculata_contig3788.9940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5916bp|location=Sequence derived from alignment at H-paniculata_contig3788:9242..15157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTCTTTTTGGATCGGTTCCCGTGGGGCAGAACACCCCCCAAGTACAAG
AGCAGCACGTAATCTCTATTCCGTCCAGCGGGCCTCTCGAAGTGAGTCCT
GAGATCAACTATGGAGTTACGAGCGCATTGCGAGACGTCGGCTGTTCTCA
AGGCTTGCCTTGTGGCTGCACAGTATGTAGGGATCGGTTCAAGCATCACC
ACCAAGATTGACGGTTCCCTCTCCACCACAGACGTTGTCCTGCGCACATC
AAACGGAGAGGTACGCGGGCGAACTGCTGTGCTCAGGTCAGTGCGGTGTC
AATCAGAACTTATGGAGGCCATGAAAAATCACTGTCTGGACAACTGTTTA
CCCGCGCATAGGCAAGAGGAGAGTCTAGCAAAAGAGACCGTCAGGCAGAG
TGGATATATGTATGCACAGGGATTTTAGAACAGGTTTTATGTACTCAGGC
GTTCCCATCTGGGCAGGATAGAACTCGTTTTATGGAGGTTTGCGGATGAT
TGTTCTCAAAAGTGCCAGCGAGGTGTAGCAGCACCCTGACTCTGGGTGGA
GAGATGCGTTGTACGAGTCATGAACGTGCCTTGTTGGGTTAAGGATTCTT
ACGATATGCAGCAATTTTCAAGACAGCGCTAATTTTTCAGAGAAAACACA
ACATATTTGTATGTTAGTTTCGGGTTGCTCCAGTCGCTCTCTCCAATGCT
GATTGCTGCACTACCTTGGCAGTCGACGGTACAAGCTATCTAATTGGGAC
GTTTTTCGAATATAGCTTGAGAGCGCACTGGAATATAGCTTGTGAACTGC
ACAAAAAAAATCGACAAATTCGGTGCATATTAAGGTGTATTTCCTCCCCA
TGAATTCCTCCAGCGACCTCTCAGTCGGGGAGCGCCTTGTCGGGGACGGA
CTGGCGGGCCGTTGGGAGGAGGTTTACGAATGAGTGAATCTCCTTGGGAC
GTCCTCGGTTTGTCTTCCCATTGGCCAACACATTACAACCTCCATATCAA
CCAACCCACTGGAGAACAGACTTTCTTAGGTACAACCTACAAGAAAAGAA
GCCCAACTACAAGGAACACTTGAAATACCATGCTAGTACAGGCCTCGCAC
GCGTGTGTGTGTTTTCTGGGTACTCCGGAGACAGAAATGTGGTGTGTGTA
TTCTACAATGTTTTCGGTGTGCATGTCCGCGCTTTGCAGTATTGCACCGT
CAACGTGGTGAGGGTATGACGATTCGATTCTGTGTCTGATTTTACCCCAT
TGTCTATCTCTGGTTGGATATTCAGGCGATATTGGTGTTGAGCAGCTTGG
GGAATTTTCCCCTCCATATATTACGGCAGCATTCGAGAACGCACAATAGT
TTTGAAAAGGCTTCAGGTTTAGCAGCATATTTGTGGAAAATGTCCCGCTG
TCCGCAGGAACACTGTCCTCAGGAATTCGACTCTTCTTGGCGTGCATCAT
CGGTACACCAGAAGGTCCAAATTGAGGCGTGGTTCCTCTTTGGGCTGCAT
CACGGAATATTACTGATAGCCTAAACGCAATTGAACATACGGACTGTGGA
CATGAAGGTGTTCTCCGCAGCGTGAAGTGTGTCTGACACTTTTCGCTCTC
TACGTATCATTTTTGCGAAGGTGTTCCCCTTTGGATTGTCGAGAGCCAGA
GAACTTTTCCGATTGGGTGAAAGAAATGCCACTGGATAATGTGTAGGGGA
CCAAGTTTAGGAACCCTGAGAACTTCAGGAACGTTCCCCTTTGGATTGTC
AAGAGCCAGAAAACTGTTCCGACTGGGTGGAAGAAATACCACTGGATAAT
GTGCAGGGTACCAAGTTTAGGAATCCTAGGAACTTCAGGAACGTGCTTTT
CACCATATCTTTTTTCTTTTGGCCATGGTGTACCAGGTACTGCCGACGCC
TAGCGTATCTGATCCCAACCAACAGAACATCGGTGGACTCCTCGTGGCTG
GAACTGTACAACTTCGCTGCATTGGCAGTTCTATTGGTGTGGTGTATAAT
TATAAATAGTCTGTTCGTGTTTGTTTCCTCGTTTGTTGGGTTGTTGGGTT
GTACACTCCAGGTACATCGGAAGGCTTGCTCCTGACGCTAGGATGGAGGG
TAGCACTGACTTCGAGACGGGGCTGGTGGACCAGTGGATCGAGTTTGCCA
CGAACGAGATGGCCTATCTTGAGGTAAGAAATGAATTGTGCTGCGCGGGT
GAGTGGTGTAAAGAAGGAAGACATGTTGTCAAAGGTGTACGACGAGTGTC
GGCGTTTACCGTAGCATCCCTTGATTTCACACACCCTCGAACTATTTTTT
CGATTAGGGTTTTTCTTGACGAGGATGGTGCTCATGTCACCGATAATGGC
ATCGTTGGAAAGATGATCGCCCAAGGTCTTTTGATTGAGTCGCTCTCGTG
CACTCATGATCGCCGAAACCAAGCAAAACAACACCAACAGTGCTTTGTCG
AAAGACTGTTACAAGCATTATTGTTGTACAACGGAGCGGTGAATGAAGGT
GTGGGGTCTCCGCGGGAGAGCTACACACGTACATGAAGGTTCGAGCGAGT
TCCTCGAGCTCATGTTTTGAAAAGCCTGGAGAAGAAAGACCTTACTTTAT
CCTCTTTTTGTCTCCGCCCTCAACCTCCGACTTTACTCTCAGGGCACGTC
TCCTGAGGCGATCGCGCACGCGGCCGGCGTAATTTCGGTCTTGGACCAGC
ACCTTCTCGCCGAGACGTTTCTTGCTTGCCAGAGGGTGACCATGGCCGAC
ATCGCTGTGTTCTGCGCGATGGAAGCGGCGGGCCGGGTCGCAGGCCATGC
TTCGTTGACCCCGGCCATCTCTCGGTGGATGAACACCTGCCGGAATCAGT
CTGAATTCCTGTGAGCAGCAAACGGTACTAGTGGCTGGGGTATTCAAGAG
AATCCCTCGAGTGTACAGTGGGCGACGGTCGTACAGTGATTACCAAAACA
GCTGTGGGAACGTAGCCCACGTGCACCCCCCCCCTCCCCCAGCAGAATAT
GAAGACGGGAGCTTGTCAAGTATTTGGCTAACTTTTAGCATGTGCAGGCA
CATTGAATGAAGTGCTTACTGCCGCTGTTGGTTTGTTTCATTGGTATTTG
CAACAGTCGCAGATGAATAGTTCAATGCACATGAAATGAATGTGCACTTG
CTGAACCTTGCGTCAAGCAGTTTTGAATTATTTGTCCAAGCCATACAATT
TCTTTTTTCTTCGTAGTCGTCCGGGAGGGGGTGCATAGGTTTGTCGTTAG
ATTGCATATGTTGTTTTTTTGTATATATTTATTTCGAAACACTGCACGAA
ATCGCATTGTGTATGTATGGGGGTATATACCAGGATCGATTTTGTGGAGA
AGCAATAAGCTATCTACACACTGTAAAATACAAATATTTGTCTGTAATGA
TGGATGTATCTGGACCAAATTGCATCGACGGTAGTACTTACGGGGTCACG
AGATAGCATCATCGTTTCGAGAGGAGACAATTGGAGGGATTTTACCTAGC
GTCGGGGGGTGCGACGACCTGTGAACTAAAATGGAAAATGCTTGTTAATA
TCCATGTGTAGTTACTGGTAACTGTTGTTCGTTGCCTGGTGCTTAGCGTC
TTGAGGGGAGGTGAGAGGCGGGTCCGCGATTGTGCAGCAAACGCATTTGA
AGAGCTTTGCCCAAGAAGAGGTGAAGAATTTGTTCAAGATAATGATTTTT
TTGTTCTGTGCTGTACTGGGTCCTTTTCACCAAGAACGCATCCGAATTCA
TTCCCGGTGCGAAATATTGGAGGGTGTTATCGAGAGAAATTTGGAAAAAG
ATATCAGAAGAGAAAATACACACACACCAGTATTGGAACTGCCTTGAGTT
GCCGATAAATCTTCATCTTTTAAGCGTTAAGCTGGGGACGTATGCCCTCA
GCGTAGGTTCACGTATGCATTTGACGCTGCTGTAGATTATAATGTACCCT
TCCCACCCGTCTCCACCTGAAACAGGTTGGCCTTGGAAGCTCACAACCGT
GACTCTAAGGTTACCACCTTGGACTTGAATGCCAGTACGTCGAGGGGACT
GCCAGATGTAAACGTCGAGGCTGATGTTCCCAAGGTGGAGCCCAAGCTGA
TGGCAGAGTTTGACCAGGGAAATGCTGCGCTGGACAAGATCAAGGAGCTA
AGGATTGAAGCTATGTTGTACGAGCATGTTGCCGCGTTCACGGTAGAGGA
GCAGGGTGTGGCGCTTGGGAGCCTGGCCGGGGTGAAGACGAAGAACTTGT
TTTTCAAGGTGGATAGGGGATAGGTATCAGGAAGGAAGTAGCACGCATGC
GTTAAGCTTTGTGTCAGTCGGCACTGACCTGGGCAAGTGGAGGACTACTG
GGTCTGTTTGATGGCGAACGGAACCTTTTTTAATACGCGGATGTAGGCGA
ATGTGACGGGAAAAAAACGTGATGATTTTTGGTATTTAAAATACTCCGTG
GGAAGCGGGAGATAGCGTTGCCAGTAAACGCTCTGTCTGTCTTGGCTAGC
GATGGTAAACTGGGAAATGATGTGGTAACAAGTGTGCGTTGGCGATTTTG
AACCCATGCTATATTCCATGTCTTGGGGGGGGGGTAATTAGGGCTGTGTA
TGCTAGAATGCCTAGAATCTGGAACCAAACACCAGGGGTGTCCTCAGTAT
TGCATGGTGCATTTCCGGAACCCGGTGAAACCCGGGTACGAAAGGGGTGC
TGGTGAGAACATAAATCTTGTAAAAGTGTCATGCAAAGAGATACAATCTG
CGTTGGGTTTTTTTCAAGTTAGAGTGAAGATCACGTTATCCAACAGCTAC
CGTGTACGGTGCTTTACCGCGGTGAATAATTTCTAAATACGGTAAAAAAA
GTAGCGTGGCAATAGCAGGGTAGATTCATTCGGATATTGGAAAAAGACTA
ACGCCTAGATATTGTTCCCATGGAGTGTTGCTTCATTGTGGTGCGCTTCT
AGAAGCATTTTTTTGTTTGGTAGGTGTCTCTTTCAGGGACGATGTCGTAT
GTTCCGAAAAAAATATTTCGCGCAACATGTAGAATATCTCTGGGATTTTC
CAAGAAGTCATCCAGATTGGCGAACTTTTTAAGACCGTTGTACCAGAGGT
TGATCGTGAGTTCGAATCCCGACGAAAAAATATATATTTTTTCTTTTTTG
TGCTTTTGATATCGAACGTGAGGAAGTTGTGGGGAGAGATAGAACTCGCG
AGTACGTTGACCTGTCCGTTTATCAAGATCACCTTGAAGAGCGAGGTTTG
CGTTGGCAGGGGGAGTTGGATACAAGGAATAGCCAAGTGGTGAGCTCGCT
GCCTTCTGTACAACATTTTTTTTTTTTTTTTACGCTGTCAAAACGGGGGT
TTGTGGGAAGCTTTGTGGTTCATCGGTCGTTTCTGAAATGCCACTTGACG
ATTGTACAGGTATCATGCGTGAATTTCTCCACCTGTTGCGCCGCCTATTG
ACGGTATTTATGCTGTTAATATTCGTTTGTTGTGTGTTTACTTTTTTTTT
TTTCGGGTGTGTCCGACAGGACAAAAAAGCAGGCCTGATTCTTGTTACGG
TGAGGCATGATCGCCCTTGCGACACGAAGACTCTCGCTAAACTTTTGGGG
CTCGCGGGGAAGGTGAGCATTTTTATGAGGAGAGCAGACGGCCAAGGATA
TTGGTGAACTTTATCGTTTTCTGCGGTTTTCGTTAGTATGGTCATGGGAG
CACGACGTGTGTAGAATGTGTGTTTCTGGAAGCACAATGTGACGCTGTGA
TCTCCGTTACGTCTCTGTCCGGGTGTGTAGAGGAAGTCGGCCGGCCAAGC
TTACTATAATACCTTCGATCGCGGACCTACGCCCGAACGGGTAGGGTAGG
TCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTCAGTGGGTG
CAACCTCCACACTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3788:9242..15157-

>mRNA_H-paniculata_contig3788.9940.1 ID=mRNA_H-paniculata_contig3788.9940.1|Name=mRNA_H-paniculata_contig3788.9940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig3788:9242..15157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTACGAGCGCATTGCGAGACGTCGGCTGTTCTCAAGGCTTGCCT
TGTGGCTGCACAGTATGTAGGGATCGGTTCAAGCATCACCACCAAGATTG
ACGGTTCCCTCTCCACCACAGACGTTGTCCTGCGCACATCAAACGGAGAG
GTACGCGGGCGAACTGCTGTGCTCAGATGGAGTTACGAGCGCATTGCGAG
ACGTCGGCTGTTCTCAAGGCTTGCCTTGTGGCTGCACAGTATGTAGGGAT
CGGTTCAAGCATCACCACCAAGATTGACGGTTCCCTCTCCACCACAGACG
TTGTCCTGCGCACATCAAACGGAGAGGTACGCGGGCGAACTGCTGTGCTC
AGGTACATCGGAAGGCTTGCTCCTGACGCTAGGATGGAGGGTAGCACTGA
CTTCGAGACGGGGCTGGTGGACCAGTGGATCGAGTTTGCCACGAACGAGA
TGGCCTATCTTGAGGTACATCGGAAGGCTTGCTCCTGACGCTAGGATGGA
GGGTAGCACTGACTTCGAGACGGGGCTGGTGGACCAGTGGATCGAGTTTG
CCACGAACGAGATGGCCTATCTTGAGGGCACGTCTCCTGAGGCGATCGCG
CACGCGGCCGGCGTAATTTCGGTCTTGGACCAGCACCTTCTCGCCGAGAC
GTTTCTTGCTTGCCAGAGGGTGACCATGGCCGACATCGCTGTGTTCTGCG
CGATGGAAGCGGCGGGCCGGGTCGCAGGCCATGCTTCGTTGACCCCGGCC
ATCTCTCGGTGGATGAACACCTGCCGGAATCAGTCTGAATTCCTGGCACG
TCTCCTGAGGCGATCGCGCACGCGGCCGGCGTAATTTCGGTCTTGGACCA
GCACCTTCTCGCCGAGACGTTTCTTGCTTGCCAGAGGGTGACCATGGCCG
ACATCGCTGTGTTCTGCGCGATGGAAGCGGCGGGCCGGGTCGCAGGCCAT
GCTTCGTTGACCCCGGCCATCTCTCGGTGGATGAACACCTGCCGGAATCA
GTCTGAATTCCTGTTGGCCTTGGAAGCTCACAACCGTGACTCTAAGGTTA
CCACCTTGGACTTGAATGCCAGTACGTCGAGGGGACTGCCAGATGTAAAC
GTCGAGGCTGATGTTCCCAAGGTGGAGCCCAAGCTGATGGCAGAGTTTGA
CCAGGGAAATGCTGCGCTGGACAAGATCAAGGAGCTAAGGATTGAAGCTA
TGTTGTACGAGCATGTTGCCGCGTTCACGGTAGAGGAGCAGGGTGTGGCG
CTTGGGAGCCTGGCCGGGGTGAAGACGAAGAACTTGTTTTTCAAGGTTGG
CCTTGGAAGCTCACAACCGTGACTCTAAGGTTACCACCTTGGACTTGAAT
GCCAGTACGTCGAGGGGACTGCCAGATGTAAACGTCGAGGCTGATGTTCC
CAAGGTGGAGCCCAAGCTGATGGCAGAGTTTGACCAGGGAAATGCTGCGC
TGGACAAGATCAAGGAGCTAAGGATTGAAGCTATGTTGTACGAGCATGTT
GCCGCGTTCACGGTAGAGGAGCAGGGTGTGGCGCTTGGGAGCCTGGCCGG
GGTGAAGACGAAGAACTTGTTTTTCAAGGACAAAAAAGCAGGCCTGATTC
TTGTTACGGTGAGGCATGATCGCCCTTGCGACACGAAGACTCTCGCTAAA
CTTTTGGGGCTCGCGGGGAAGGTGAGCATTTTTATGAGGAGAGCAGACGG
CCAAGGATATTGGTGAGACAAAAAAGCAGGCCTGATTCTTGTTACGGTGA
GGCATGATCGCCCTTGCGACACGAAGACTCTCGCTAAACTTTTGGGGCTC
GCGGGGAAGGTGAGCATTTTTATGAGGAGAGCAGACGGCCAAGGATATTG
GTGA
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