mRNA_H-paniculata_contig3766.9895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3766.9895.1
Unique NamemRNA_H-paniculata_contig3766.9895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A6H5K552_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K552_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.810e-18
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 EEQMGVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPPGS 138
            EEQ GVTVPFYFIC+LHLANEKGLKLEGRDD+ DFSV+SDPV  GS
Sbjct:  324 EEQTGVTVPFYFICLLHLANEKGLKLEGRDDLLDFSVASDPVKEGS 369
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.730e-17
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 EEQMGVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPPGS 138
            EEQ GVTV FYFIC+LHLANEKGLKLEGRDD+ DFSV+SDPV  GS
Sbjct:  793 EEQTGVTVSFYFICLLHLANEKGLKLEGRDDLLDFSVASDPVKEGS 838
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A3L6USJ3_9STRA (Condensin complex subunit 2 (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6USJ3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.470e-11
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPP 132
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP  P
Sbjct:   78 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDPSVP 117
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.400e-11
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 EEQMGVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSS 117
            E+Q GVTV +YFIC+LHLANEKGL+LEG+DD+ DF + +
Sbjct:  801 EDQSGVTVSYYFICLLHLANEKGLRLEGQDDLMDFGIGA 839
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A6G0XUU4_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUU4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPPGS 138
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP  P +
Sbjct:  793 NVTVSFYFICMLHLANDKGLELIGQDDMRDFKILHDPPAPST 834
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A418DL85_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DL85_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.230e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPP 132
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP  P
Sbjct:  606 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDPSVP 645
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: W4H5W8_9STRA (Condensin complex subunit 2 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5W8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPP 132
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP  P
Sbjct:  828 NVTVSFYFICMLHLANDKGLELVGQDDMRDFQILHDPSVP 867
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A485LHY8_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHY8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPV 126
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP 
Sbjct:  809 NVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDPT 846
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BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A3R6WQY5_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WQY5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.780e-10
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDP 123
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP
Sbjct:  409 NVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 445
[Close]
BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Match: A0A024UH53_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH53_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   13 GVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDP 123
             VTV FYFIC+LHLAN+KGL+L G+DDMRDF +  DP
Sbjct:  829 NVTVSFYFICMLHLANDKGLELVGQDDMRDFKILHDP 865
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3766.9895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K552_9PHAE1.810e-1884.78Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI3.730e-1782.61Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A3L6USJ3_9STRA1.470e-1167.50Condensin complex subunit 2 (Fragment) n=3 Tax=Aph... [more]
A0A835Z1S3_9STRA6.400e-1166.67Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A6G0XUU4_9STRA1.640e-1064.29Condensin complex subunit 2 n=1 Tax=Aphanomyces eu... [more]
A0A418DL85_9STRA2.230e-1067.50Condensin complex subunit 2 n=1 Tax=Aphanomyces as... [more]
W4H5W8_9STRA2.240e-1067.50Condensin complex subunit 2 n=3 Tax=Aphanomyces as... [more]
A0A485LHY8_9STRA5.710e-1068.42Condensin complex subunit 2 n=1 Tax=Aphanomyces st... [more]
A0A3R6WQY5_9STRA7.780e-1070.27Condensin complex subunit 2 n=1 Tax=Aphanomyces in... [more]
A0A024UH53_9STRA7.810e-1070.27Condensin complex subunit 2 n=1 Tax=Aphanomyces in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3766contigH-paniculata_contig3766:2766..2909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size144
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.269895-CDS-H-paniculata_contig3766:2765..29001622930157.269895-CDS-H-paniculata_contig3766:2765..2900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3766 2766..2900 -
1691481170.64349-CDS-H-paniculata_contig3766:2765..29001691481170.64349-CDS-H-paniculata_contig3766:2765..2900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3766 2766..2900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.2836053-UTR-H-paniculata_contig3766:2900..29091622930157.2836053-UTR-H-paniculata_contig3766:2900..2909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3766 2901..2909 -
1691481170.6569023-UTR-H-paniculata_contig3766:2900..29091691481170.6569023-UTR-H-paniculata_contig3766:2900..2909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3766 2901..2909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3766.9895.1prot_H-paniculata_contig3766.9895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3766 2766..2900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3766.9895.1

>prot_H-paniculata_contig3766.9895.1 ID=prot_H-paniculata_contig3766.9895.1|Name=mRNA_H-paniculata_contig3766.9895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MGVTVPFYFICVLHLANEKGLKLEGRDDMRDFSVSSDPVPPGSY*
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mRNA from alignment at H-paniculata_contig3766:2766..2909-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3766.9895.1 ID=mRNA_H-paniculata_contig3766.9895.1|Name=mRNA_H-paniculata_contig3766.9895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig3766:2766..2909- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAACAAATGGGCGTGACGGTGCCGTTCTACTTCATCTGCGTCCTGCA
CCTTGCCAACGAGAAGGGTCTTAAGCTGGAGGGCCGTGACGACATGCGCG
ACTTTTCCGTCTCCAGCGATCCTGTACCGCCGGGGTCATACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3766:2766..2909-

>mRNA_H-paniculata_contig3766.9895.1 ID=mRNA_H-paniculata_contig3766.9895.1|Name=mRNA_H-paniculata_contig3766.9895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig3766:2766..2909- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTGACGGTGCCGTTCTACTTCATCTGCGTCCTGCACCTTGCCAA
CGAGAAGGGTCTTAAGCTGGAGGGCCGTGACGACATGCGCGACTTTTCCG
TCTCCAGCGATCCTGTACCGCCGGGGTCATACTAGATGGGCGTGACGGTG
CCGTTCTACTTCATCTGCGTCCTGCACCTTGCCAACGAGAAGGGTCTTAA
GCTGGAGGGCCGTGACGACATGCGCGACTTTTCCGTCTCCAGCGATCCTG
TACCGCCGGGGTCATACTAG
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