mRNA_H-paniculata_contig3762.9890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3762.9890.1
Unique NamemRNA_H-paniculata_contig3762.9890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3762.9890.1 vs. uniprot
Match: A0A835YTM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.710e-10
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  116 GKSWNAQRAVWRGTLCGRADGRITVGVCAREKKAKSKHMEAITSRLNPSKFE 271
            GK W+ +   WRG L  R+DG+ITVG+CAR+KKA+SKHM +I SR + SKFE
Sbjct:    5 GKGWDGKTITWRGKLA-RSDGKITVGICARDKKAQSKHMRSILSRFDTSKFE 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3762.9890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTM7_9STRA6.710e-1059.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3762contigH-paniculata_contig3762:12968..15376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3762.9890.1prot_H-paniculata_contig3762.9890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3762 13053..15201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.7838352-UTR-H-paniculata_contig3762:12967..130521622930156.7838352-UTR-H-paniculata_contig3762:12967..13052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3762 12968..13052 +
1691481170.4230216-UTR-H-paniculata_contig3762:12967..130521691481170.4230216-UTR-H-paniculata_contig3762:12967..13052Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3762 12968..13052 +
1622930156.8346918-UTR-H-paniculata_contig3762:15201..153761622930156.8346918-UTR-H-paniculata_contig3762:15201..15376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3762 15202..15376 +
1691481170.4522738-UTR-H-paniculata_contig3762:15201..153761691481170.4522738-UTR-H-paniculata_contig3762:15201..15376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3762 15202..15376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.8022718-CDS-H-paniculata_contig3762:13052..132381622930156.8022718-CDS-H-paniculata_contig3762:13052..13238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3762 13053..13238 +
1691481170.432948-CDS-H-paniculata_contig3762:13052..132381691481170.432948-CDS-H-paniculata_contig3762:13052..13238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3762 13053..13238 +
1622930156.8157113-CDS-H-paniculata_contig3762:15186..152011622930156.8157113-CDS-H-paniculata_contig3762:15186..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3762 15187..15201 +
1691481170.4426177-CDS-H-paniculata_contig3762:15186..152011691481170.4426177-CDS-H-paniculata_contig3762:15186..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3762 15187..15201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3762.9890.1

>prot_H-paniculata_contig3762.9890.1 ID=prot_H-paniculata_contig3762.9890.1|Name=mRNA_H-paniculata_contig3762.9890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLQSSPTEVMGKSWNAQRAVWRGTLCGRADGRITVGVCAREKKAKSKHME
AITSRLNPSKFEKNRQ*
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mRNA from alignment at H-paniculata_contig3762:12968..15376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3762.9890.1 ID=mRNA_H-paniculata_contig3762.9890.1|Name=mRNA_H-paniculata_contig3762.9890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2409bp|location=Sequence derived from alignment at H-paniculata_contig3762:12968..15376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCGAACGGTCGTATAGAGGACATATAACGAGATAGAGACAGCTAGA
TACAGTTGAACAGTCAGCCAGAGACAGGGTCAGAGATGCTTCAATCGAGC
CCCACGGAGGTGATGGGTAAAAGTTGGAACGCTCAGCGAGCGGTGTGGCG
AGGGACCCTGTGCGGCCGAGCGGACGGGAGGATAACGGTGGGCGTCTGTG
CTCGAGAAAAGAAGGCCAAGTCGAAGCACATGGAAGCGATCACGTCCAGA
CTTAACCCTTCGAAATTTGAGGTACCTAGTCCAACTCGCCGTAGCTCTGT
GTGTGATACTACGCCCCTGTCCACTAGAGTAGCAATTGTGAGTCTGATTG
GTGGCCTTTCACGTTTGGATGGTGAGTCGGACGGTACCAATCCTCTTGAC
CTTCGAATTATGCCGTTTACAGGACGTCCAGGACGTCCAGTACAACACGG
CACGTCCAGTACCACAGTGTAGTTTGTTGTGTATGCTGACTGAATCTCAT
CGGTCCGGGGCTATGTACTGACTGTGGGTCCCAGATCTTTGTAGGTTTTT
GATTTTTTTTCGCTGCTCTTCACCTACAAAATGCGCAAACGCAGCAAGTA
CAGTATTCAACGCAGTGGCAGCACCAGCCAGCAGTATGTCTGGCAACTAG
CCTGGAAGCCCGTTTAAACGTAACTGTGCAAAAGGCGTGGTTTTCCATCC
GGGCGTGTCTTCTCCTAAAATAACCCCGTAGGAAGGTCTGCAGCTTCGTG
GGCGAATAGCCCGCGATAAAGTTGAAGAACTCGTCATGTGTCCGGAAGAC
GCTGCATCCATGACGGCATAATAGAGCCCCTCTAGCCTACCACATAGTCA
CGTACAGTCTTTTATGTTCAGTTCGCGATGTGTCGTTCAGATCGAGGGTG
TTGAAGTTTTCTACTCTAACAAGAGGCAGATTATTGTAAGGCCATGTCTT
CGCGGACCAAAAAAAAAACCCCATCCTCAAAAACGATGTATTTCGCGCTT
TTCGAAGAAAAATTATTCTTTTGTCCGGATGAGGAACAGAGAAACGCGGA
ATTGTACAATCGGTTTTTGAATCTGGGGAAAAATGTATTTCTTGTTTGAC
TTTGGGTGGCAACAGGGAACATGAACACAAAAAGGTGTACCACAGAGAAC
CCCAAACAATATGCACAGAGAGCCCCAGTACACGCGCACTAGTTTCAAAT
CCGGCCGTTGCTCCGCTATGCATGTCGCCCTTCGAGACAAATTGGTTCAG
TATCAGGAGCCAAAACAATCCATGTAAAATCGAGAGTACAAGATGTCCCC
TATTCTACACATTTTCTATCAGTCGGGCTTGCCACGAGCGCCGCCTGCCT
GTAAACATCCGTTATCTTTAAGTTCTGCACGAACTTGATTAACCCAAATC
ACATACACGTTGCTCAGCTAATCAAGAGCTGCGGCCCGAGCTACGTTTGT
TGTACCGGGGACAGTACAGCTATCATGGTCTTAGGCAGGCAGCGCGGCAG
TCCGTTTACCAAATTTGTACCACTCCCAACCTGGTCCCTACCTATGTTCG
TGTTGGGCCCTGAAATCGTTTTCTGGGGATTAGAGTTCTAGGAGGACGTG
TTTTTGAAAAATCCTTGAAGATTTTCTCAAAAATGATTTCATAAATCGTT
TTTTTTTGGCCCCCCATATTGGGGCGATGGGTATCGCTCAACCAACCTCA
GGCGGAGATTCAAGAGTCGATTGTTGGGAGAATGCGTATCTTTTGGTCTG
ATAAGATATGCCCTATCTCCTTAACCGTTCGTTCCCATTGATGATGCAAT
CTTTATCCATTCCCTATCTCAGGAACGGGGCGAAACGACGAATATGATAC
GATTACGGGGATAGGGAGCCGACTCTTTGAAGATATAGACAATCCAGTAT
TATAGTAAGAGTGCATACAATATAGACATTAAGTTGGTGTGCATCTCCAT
CTGTTCACATCGACTGCCGGGCTCGATATGTGTTGTGAGACGTTTTTTTT
TTTTTTTTTTTCTGAATCAGCCCTCCGAAAAAAAGGCTCGGCACTATCTA
TGTAAACACAAGTACTGTGAAAGGGTGAACACGGACGATCTTATATGTAG
ATCGTGCATAGGTAACATCGTGCACAGCATTATTGCACCTACCCTTCCCT
TATTATCCACTCGATGGGTTACTCGAGAGTACGTATGACGTCGACTTCGT
GTTTTTTTTCTTTCAAAAGAAAAACAGGCAATGACGATGTGCAAGTGCAA
GGTCCAATGCTTCTGCTGGCGGTTGGTCAGTCTGGCTGGTCGCTATCGCT
ACACATGTCGGGCTGCTTGGTGATTGGTGTACATCGTTCTTCCAATAGAG
AGCAATTGTCTGAGTTGTGCGGACGTCACGGGGAGGGAGGGGTACAGGTG
AAGACAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3762:12968..15376+

>mRNA_H-paniculata_contig3762.9890.1 ID=mRNA_H-paniculata_contig3762.9890.1|Name=mRNA_H-paniculata_contig3762.9890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig3762:12968..15376+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCAATCGAGCCCCACGGAGGTGATGGGTAAAAGTTGGAACGCTCA
GCGAGCGGTGTGGCGAGGGACCCTGTGCGGCCGAGCGGACGGGAGGATAA
CGGTGGGCGTCTGTGCTCGAGAAAAGAAGGCCAAGTCGAAGCACATGGAA
GCGATCACGTCCAGACTTAACCCTTCGAAATTTGAGATGCTTCAATCGAG
CCCCACGGAGGTGATGGGTAAAAGTTGGAACGCTCAGCGAGCGGTGTGGC
GAGGGACCCTGTGCGGCCGAGCGGACGGGAGGATAACGGTGGGCGTCTGT
GCTCGAGAAAAGAAGGCCAAGTCGAAGCACATGGAAGCGATCACGTCCAG
ACTTAACCCTTCGAAATTTGAGAAAAACAGGCAATGAAAAAACAGGCAAT
GA
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