mRNA_H-paniculata_contig37565.9879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37565.9879.1
Unique NamemRNA_H-paniculata_contig37565.9879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4EJA0_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJA0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.290e-13
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            ++AE L+L+H+D  GP+  K  GGC +A++FIDD+SR   VY +++K+E L   K+F+ D+  A   +IKR+RSD
Sbjct:   15 KSAEVLDLIHSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKFKRFKADMENATERKIKRIRSD 89          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 67.4 bits (163), Expect = 2.610e-11
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            ++ R  +PLE+VH+D AGP D P  GG  + + FIDD+SR   VY L++KSE L   K+F+  V + +G  +K LRSD
Sbjct:  835 KSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSD 912          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4AQ35_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AQ35_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.620e-11
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRS 228
            ++A  L+L+++D  GP+  K  GGC +A++FIDD+SR   VY +++K+E L  LK F+ D+  A G +IKR+RS
Sbjct:   87 KSAGVLDLINSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKLKMFKTDMENATGRKIKRIRS 160          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 6.680e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            R+ R   PLE+VHTD AGP D P  GG  + + FIDD+SR   +Y L++KSEAL  L++F+    + +G  +K LRSD
Sbjct: 1303 RSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSD 1380          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 6.690e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            R+ R   PLE+VHTD AGP D P  GG  + + FIDD+SR   +Y L++KSEAL  L++F+    + +G  +K LRSD
Sbjct:  381 RSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSD 458          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4BAI9_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BAI9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.460e-10
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRL 222
            ++A  L+L+H+D  GP   K  GGC +A++FIDD+SR   VY +++K+E L  LK F+ D+  A G +IKR+
Sbjct:  195 KSAGVLDLIHSDIMGPKQTKAPGGCTYAVMFIDDFSRHVTVYFMKKKTEVLEKLKMFKADMENATGRKIKRI 266          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A3H8B0_9STRA (Integrase catalytic domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H8B0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.040e-10
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRL 222
            ++A  L+L+H+D  GP   K  GGC +A++FIDD+SR   VY +++K+E L  LK F+ D+  A G +IKR+
Sbjct:  195 KSAGVLDLIHSDIMGPKQTKAPGGCTYAVMFIDDFSRHVTVYFMKKKTEVLEKLKMFKADMENATGRKIKRI 266          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A5N6P8N4_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P8N4_9ASTR)

HSP 1 Score: 64.3 bits (155), Expect = 3.130e-10
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   22 PLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            PL+LVHTD  GPV+K   GG  + I FIDDYS+   VY ++ KSEAL   K+F     R  G ++K LRSD
Sbjct:   57 PLDLVHTDVFGPVNKKSIGGMVYMIEFIDDYSKFVWVYFMQSKSEALAKFKEFRLVAERETGRKVKVLRSD 127          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A0A1UJC6_9AGAM (Pol polyprotein/retrotransposon, putative (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=A0A0A1UJC6_9AGAM)

HSP 1 Score: 61.6 bits (148), Expect = 2.790e-9
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   10 RTAEPLELVHTDRAGPVDKPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            R ++PLEL+H+D  GP +    G  +A++F+DDYSRM  V  L+ KS+++ A  Q    + ++ G +IK LR+D
Sbjct:  185 RASQPLELIHSDICGPHEPAVDGSRYALMFLDDYSRMLWVCFLKAKSDSMSAFIQLRAVLEKSTGFQIKTLRTD 258          
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU)

HSP 1 Score: 61.2 bits (147), Expect = 3.810e-9
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   13 TAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
            T + LELVHTD  GP++ K  GG  + + FIDD+SRM  +Y++++KSE     K F+  V       IK+LRSD
Sbjct:  459 TKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSD 532          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4EJA0_9STRA2.290e-1345.33Integrase catalytic domain-containing protein n=3 ... [more]
A0A2G2VUS6_CAPBA2.610e-1146.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4AQ35_9STRA3.620e-1144.59Integrase catalytic domain-containing protein (Fra... [more]
A0A6A2WXP0_HIBSY6.680e-1147.44Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A3BY51_HIBSY6.690e-1147.44Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A6A4BAI9_9STRA2.460e-1044.44Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3H8B0_9STRA3.040e-1044.44Integrase catalytic domain-containing protein n=6 ... [more]
A0A5N6P8N4_9ASTR3.130e-1050.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A0A1UJC6_9AGAM2.790e-940.54Pol polyprotein/retrotransposon, putative (Fragmen... [more]
A0A0A1WGJ2_ZEUCU3.810e-944.59Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37565contigH-paniculata_contig37565:1853..2086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.9e-10
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.247557-CDS-H-paniculata_contig37565:1852..20861622930155.247557-CDS-H-paniculata_contig37565:1852..2086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37565 1853..2086 +
1691481169.739688-CDS-H-paniculata_contig37565:1852..20861691481169.739688-CDS-H-paniculata_contig37565:1852..2086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37565 1853..2086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37565.9879.1prot_H-paniculata_contig37565.9879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37565 1853..2086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37565.9879.1

>prot_H-paniculata_contig37565.9879.1 ID=prot_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
RAERTAEPLELVHTDRAGPVDKPFGGCCFAIIFIDDYSRMREVYTLRQKS
EALWALKQFERDVARANGLRIKRLRSDQ
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mRNA from alignment at H-paniculata_contig37565:1853..2086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37565.9879.1 ID=mRNA_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig37565:1853..2086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGCAGAGCGGACGGCCGAGCCGTTGGAGCTGGTGCACACCGACAGAGC CGGACCGGTTGACAAGCCCTTCGGAGGATGTTGCTTCGCCATCATCTTCA TCGACGACTACAGCAGAATGCGCGAAGTCTATACCTTGCGACAAAAGTCG GAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAA CGGTTTGCGGATTAAGCGCCTTCGATCGGATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig37565:1853..2086+

>mRNA_H-paniculata_contig37565.9879.1 ID=mRNA_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig37565:1853..2086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGCAGAGCGGACGGCCGAGCCGTTGGAGCTGGTGCACACCGACAGAGC
CGGACCGGTTGACAAGCCCTTCGGAGGATGTTGCTTCGCCATCATCTTCA
TCGACGACTACAGCAGAATGCGCGAAGTCTATACCTTGCGACAAAAGTCG
GAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAA
CGGTTTGCGGATTAAGCGCCTTCGATCGGATCAGCGAGCAGAGCGGACGG
CCGAGCCGTTGGAGCTGGTGCACACCGACAGAGCCGGACCGGTTGACAAG
CCCTTCGGAGGATGTTGCTTCGCCATCATCTTCATCGACGACTACAGCAG
AATGCGCGAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCTATGGGCCC
TGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAACGGTTTGCGGATTAAG
CGCCTTCGATCGGATCAG
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