mRNA_H-paniculata_contig37565.9879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4EJA0_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJA0_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.290e-13 Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
++AE L+L+H+D GP+ K GGC +A++FIDD+SR VY +++K+E L K+F+ D+ A +IKR+RSD
Sbjct: 15 KSAEVLDLIHSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKFKRFKADMENATERKIKRIRSD 89
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 67.4 bits (163), Expect = 2.610e-11 Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
++ R +PLE+VH+D AGP D P GG + + FIDD+SR VY L++KSE L K+F+ V + +G +K LRSD
Sbjct: 835 KSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSD 912
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4AQ35_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AQ35_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.620e-11 Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRS 228
++A L+L+++D GP+ K GGC +A++FIDD+SR VY +++K+E L LK F+ D+ A G +IKR+RS
Sbjct: 87 KSAGVLDLINSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKLKMFKTDMENATGRKIKRIRS 160
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 66.2 bits (160), Expect = 6.680e-11 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
R+ R PLE+VHTD AGP D P GG + + FIDD+SR +Y L++KSEAL L++F+ + +G +K LRSD
Sbjct: 1303 RSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSD 1380
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 66.2 bits (160), Expect = 6.690e-11 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1 RAERTAEPLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
R+ R PLE+VHTD AGP D P GG + + FIDD+SR +Y L++KSEAL L++F+ + +G +K LRSD
Sbjct: 381 RSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSD 458
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A4BAI9_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BAI9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.460e-10 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRL 222
++A L+L+H+D GP K GGC +A++FIDD+SR VY +++K+E L LK F+ D+ A G +IKR+
Sbjct: 195 KSAGVLDLIHSDIMGPKQTKAPGGCTYAVMFIDDFSRHVTVYFMKKKTEVLEKLKMFKADMENATGRKIKRI 266
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A6A3H8B0_9STRA (Integrase catalytic domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H8B0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.040e-10 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 10 RTAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRL 222
++A L+L+H+D GP K GGC +A++FIDD+SR VY +++K+E L LK F+ D+ A G +IKR+
Sbjct: 195 KSAGVLDLIHSDIMGPKQTKAPGGCTYAVMFIDDFSRHVTVYFMKKKTEVLEKLKMFKADMENATGRKIKRI 266
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A5N6P8N4_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P8N4_9ASTR) HSP 1 Score: 64.3 bits (155), Expect = 3.130e-10 Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 22 PLELVHTDRAGPVDKP-FGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
PL+LVHTD GPV+K GG + I FIDDYS+ VY ++ KSEAL K+F R G ++K LRSD
Sbjct: 57 PLDLVHTDVFGPVNKKSIGGMVYMIEFIDDYSKFVWVYFMQSKSEALAKFKEFRLVAERETGRKVKVLRSD 127
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A0A1UJC6_9AGAM (Pol polyprotein/retrotransposon, putative (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=A0A0A1UJC6_9AGAM) HSP 1 Score: 61.6 bits (148), Expect = 2.790e-9 Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 10 RTAEPLELVHTDRAGPVDKPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
R ++PLEL+H+D GP + G +A++F+DDYSRM V L+ KS+++ A Q + ++ G +IK LR+D
Sbjct: 185 RASQPLELIHSDICGPHEPAVDGSRYALMFLDDYSRMLWVCFLKAKSDSMSAFIQLRAVLEKSTGFQIKTLRTD 258
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU) HSP 1 Score: 61.2 bits (147), Expect = 3.810e-9 Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 13 TAEPLELVHTDRAGPVD-KPFGGCCFAIIFIDDYSRMREVYTLRQKSEALWALKQFERDVARANGLRIKRLRSD 231
T + LELVHTD GP++ K GG + + FIDD+SRM +Y++++KSE K F+ V IK+LRSD
Sbjct: 459 TKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSD 532 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37565.9879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig37565.9879.1 >prot_H-paniculata_contig37565.9879.1 ID=prot_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp RAERTAEPLELVHTDRAGPVDKPFGGCCFAIIFIDDYSRMREVYTLRQKSback to top mRNA from alignment at H-paniculata_contig37565:1853..2086+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig37565.9879.1 ID=mRNA_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig37565:1853..2086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig37565:1853..2086+ >mRNA_H-paniculata_contig37565.9879.1 ID=mRNA_H-paniculata_contig37565.9879.1|Name=mRNA_H-paniculata_contig37565.9879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig37565:1853..2086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |