mRNA_H-paniculata_contig3744.9856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3744.9856.1
Unique NamemRNA_H-paniculata_contig3744.9856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3744.9856.1 vs. uniprot
Match: D8LHB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 7.260e-18
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 GGESAIREREAAGKVQYGNTGIWEHGLGEEETPTGGTTLRANIAGLLVSIPLPPEAFCAWDRKTTSPAGYPKRSD 225
            G E+A  + + AG V+ GNTG+WEH  GE+ TPTGGT ++  IAG+ VS+PLPPEAFCAW +++ SPAG P   D
Sbjct:  280 GAEAAPGQNQGAG-VEVGNTGVWEHMEGEDGTPTGGTIMKVMIAGIEVSVPLPPEAFCAWKQRS-SPAGLPGAED 352
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BLAST of mRNA_H-paniculata_contig3744.9856.1 vs. uniprot
Match: A0A6H5L0E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.050e-15
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 GGESAIREREAAGKVQYGNTGIWEHGLGEEETPTGGTTLRANIAGLLVSIPLPPEAFCAWDRKTTSPAGYPKRSD 225
            G E+A  + + AG V+ GNTG+WEH  GE+ TPTGGT ++  IAG+ VS+PLPP+ F AW ++  SPAG P   D
Sbjct:  312 GAEAAPSQNQGAG-VEVGNTGVWEHMEGEDGTPTGGTIMKVMIAGIEVSVPLPPQTFRAWKQRA-SPAGPPGAED 384
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3744.9856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHB1_ECTSI7.260e-1856.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E5_9PHAE5.050e-1552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3744contigH-paniculata_contig3744:1573..2128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_001240.1
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.070109-CDS-H-paniculata_contig3744:1572..16601622930152.070109-CDS-H-paniculata_contig3744:1572..1660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 1573..1660 +
1691481168.3972077-CDS-H-paniculata_contig3744:1572..16601691481168.3972077-CDS-H-paniculata_contig3744:1572..1660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 1573..1660 +
1622930152.0851154-CDS-H-paniculata_contig3744:1991..21281622930152.0851154-CDS-H-paniculata_contig3744:1991..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 1992..2128 +
1691481168.4097445-CDS-H-paniculata_contig3744:1991..21281691481168.4097445-CDS-H-paniculata_contig3744:1991..2128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 1992..2128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3744.9856.1prot_H-paniculata_contig3744.9856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3744 1573..2128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3744.9856.1

>prot_H-paniculata_contig3744.9856.1 ID=prot_H-paniculata_contig3744.9856.1|Name=mRNA_H-paniculata_contig3744.9856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
GGESAIREREAAGKVQYGNTGIWEHGLGEEETPTGGTTLRANIAGLLVSI
PLPPEAFCAWDRKTTSPAGYPKRSD
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mRNA from alignment at H-paniculata_contig3744:1573..2128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3744.9856.1 ID=mRNA_H-paniculata_contig3744.9856.1|Name=mRNA_H-paniculata_contig3744.9856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig3744:1573..2128+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGCGAATCGGCGATCAGAGAACGGGAGGCGGCGGGCAAGGTACAATA
CGGCAATACGGGCATCTGGGAGCATGGTCTCGGGGAAGGTAAGTAGCCGT
TATCGTCAGGTTAGCTCTAAAACGATCCGTGTCATGCGAGTCCCACGCGT
CGAAGCACCTCGTATTCAGTTAGATATCATTAAGCTCGTAGCGTCCTGTC
AACACCATTGTGATCATCACACGCTTTTAGGACGACCGACTTTTCAGTAC
ATTCACATTTCAGGGCACGATTATCATTGGAACGTTTCCTTAAAGAGCGT
GGAACTCTGTCATCTATGGCAAGATCATCACGATCGTCTTTCGATTGTTC
GTTTGTTCGTGGCACCCAACACGCGTCGCTCATCACACCACACTGATCGT
TAACCGTATATATGTGCAGAGGAGACACCGACCGGAGGTACAACCTTAAG
AGCAAACATCGCGGGCCTTCTTGTCTCCATCCCTTTACCGCCAGAAGCTT
TCTGCGCCTGGGACAGGAAAACGACTTCGCCCGCGGGATACCCTAAGAGG
AGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3744:1573..2128+

>mRNA_H-paniculata_contig3744.9856.1 ID=mRNA_H-paniculata_contig3744.9856.1|Name=mRNA_H-paniculata_contig3744.9856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig3744:1573..2128+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGCGAATCGGCGATCAGAGAACGGGAGGCGGCGGGCAAGGTACAATA
CGGCAATACGGGCATCTGGGAGCATGGTCTCGGGGAAGGGTGGCGAATCG
GCGATCAGAGAACGGGAGGCGGCGGGCAAGGTACAATACGGCAATACGGG
CATCTGGGAGCATGGTCTCGGGGAAGAGGAGACACCGACCGGAGGTACAA
CCTTAAGAGCAAACATCGCGGGCCTTCTTGTCTCCATCCCTTTACCGCCA
GAAGCTTTCTGCGCCTGGGACAGGAAAACGACTTCGCCCGCGGGATACCC
TAAGAGGAGCGACAGGAGACACCGACCGGAGGTACAACCTTAAGAGCAAA
CATCGCGGGCCTTCTTGTCTCCATCCCTTTACCGCCAGAAGCTTTCTGCG
CCTGGGACAGGAAAACGACTTCGCCCGCGGGATACCCTAAGAGGAGCGAC
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