mRNA_H-paniculata_contig3743.9854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3743.9854.1
Unique NamemRNA_H-paniculata_contig3743.9854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3743.9854.1 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.990e-19
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  475 PRDGAAEQAKDLLVIGRARLLAGDTSSSLEMFRRAADLDPRNCTAKVELGRALIACGMRMEGFESLVAAFQLDSLCPGAKDAFREYYRAEIE 750
            P +GA    + LL +GR +  AGD  S++  F RAA   PR+   + ELGRAL+  G   EGF  LVAAF +DSLCPG KD FREYYRAEIE
Sbjct:   58 PDNGA--NTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIE 147
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BLAST of mRNA_H-paniculata_contig3743.9854.1 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.860e-18
Identity = 49/92 (53.26%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  475 PRDGAAEQAKDLLVIGRARLLAGDTSSSLEMFRRAADLDPRNCTAKVELGRALIACGMRMEGFESLVAAFQLDSLCPGAKDAFREYYRAEIE 750
            P +GA    + LL +GR    AGD  S++  F +AA   PR+   + ELGRAL+  G   EGF  LVAAF +DSLCPG KD FREYYRAEIE
Sbjct:   58 PDNGA--NTERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIE 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3743.9854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K431_9PHAE3.990e-1954.35GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FH04_ECTSI1.860e-1853.26UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3743contigH-paniculata_contig3743:10333..11082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D7FH04
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Exons1
Model size750
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.964666-UTR-H-paniculata_contig3743:10332..106291622930151.964666-UTR-H-paniculata_contig3743:10332..10629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3743 10333..10629 +
1691481168.3535419-UTR-H-paniculata_contig3743:10332..106291691481168.3535419-UTR-H-paniculata_contig3743:10332..10629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3743 10333..10629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.977212-CDS-H-paniculata_contig3743:10629..110821622930151.977212-CDS-H-paniculata_contig3743:10629..11082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3743 10630..11082 +
1691481168.3646815-CDS-H-paniculata_contig3743:10629..110821691481168.3646815-CDS-H-paniculata_contig3743:10629..11082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3743 10630..11082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3743.9854.1prot_H-paniculata_contig3743.9854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3743 10630..11082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3743.9854.1

>prot_H-paniculata_contig3743.9854.1 ID=prot_H-paniculata_contig3743.9854.1|Name=mRNA_H-paniculata_contig3743.9854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MRVAFVVPHKFTPVPLQHYYVNSFTCSHKDIFPDFRRLQQHVTGRRCSIK
GYSHIGTISPRDGAAEQAKDLLVIGRARLLAGDTSSSLEMFRRAADLDPR
NCTAKVELGRALIACGMRMEGFESLVAAFQLDSLCPGAKDAFREYYRAEI
E
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mRNA from alignment at H-paniculata_contig3743:10333..11082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3743.9854.1 ID=mRNA_H-paniculata_contig3743.9854.1|Name=mRNA_H-paniculata_contig3743.9854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=750bp|location=Sequence derived from alignment at H-paniculata_contig3743:10333..11082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTCAGTATTTGTAATTTCAAAAATTGCAGCTCTGTTTGTCGTTTGT
TTTTTGGCGGCCCAAAAACATTTGACAATCACACCATCAACATTGACAAG
GATGCGCAGGAGTGAAATAGTGAGATTAGATATAATGCCGGCGGCCGCAT
CCACTGCAACATCGATAGGGGCTACAGACTCTACTCTATGGGTCATCGAG
GACAAGCACTCGCTTAACGGGTCTGAGAAATAAAAAATCTGTCGAATCTA
CTCATGCGAAGTACAACTGCATCACGTAACAACTGTACTCGGGCAACATG
CGAGTTGCCTTCGTGGTGCCCCATAAGTTCACCCCAGTTCCACTTCAGCA
CTATTATGTCAATTCTTTTACCTGCTCCCATAAGGATATTTTTCCTGATT
TCCGTCGTCTGCAACAACATGTGACGGGGCGACGATGTTCAATAAAAGGT
TATAGTCATATCGGTACAATCAGTCCCCGTGATGGTGCTGCGGAGCAAGC
GAAAGACCTGCTCGTGATAGGCCGTGCGCGCCTCCTGGCAGGTGACACAT
CGTCTTCGCTGGAGATGTTTCGGCGCGCGGCAGACCTTGACCCACGGAAT
TGCACGGCTAAAGTGGAATTGGGTCGTGCTTTGATCGCTTGCGGGATGAG
GATGGAGGGGTTCGAGAGCTTGGTGGCTGCCTTTCAGCTCGACTCGTTGT
GTCCTGGCGCGAAGGATGCTTTCCGCGAGTACTACCGGGCCGAGATCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3743:10333..11082+

>mRNA_H-paniculata_contig3743.9854.1 ID=mRNA_H-paniculata_contig3743.9854.1|Name=mRNA_H-paniculata_contig3743.9854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig3743:10333..11082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTTGCCTTCGTGGTGCCCCATAAGTTCACCCCAGTTCCACTTCA
GCACTATTATGTCAATTCTTTTACCTGCTCCCATAAGGATATTTTTCCTG
ATTTCCGTCGTCTGCAACAACATGTGACGGGGCGACGATGTTCAATAAAA
GGTTATAGTCATATCGGTACAATCAGTCCCCGTGATGGTGCTGCGGAGCA
AGCGAAAGACCTGCTCGTGATAGGCCGTGCGCGCCTCCTGGCAGGTGACA
CATCGTCTTCGCTGGAGATGTTTCGGCGCGCGGCAGACCTTGACCCACGG
AATTGCACGGCTAAAGTGGAATTGGGTCGTGCTTTGATCGCTTGCGGGAT
GAGGATGGAGGGGTTCGAGAGCTTGGTGGCTGCCTTTCAGCTCGACTCGT
TGTGTCCTGGCGCGAAGGATGCTTTCCGCGAGTACTACCGGGCCGAGATC
GAGATGCGAGTTGCCTTCGTGGTGCCCCATAAGTTCACCCCAGTTCCACT
TCAGCACTATTATGTCAATTCTTTTACCTGCTCCCATAAGGATATTTTTC
CTGATTTCCGTCGTCTGCAACAACATGTGACGGGGCGACGATGTTCAATA
AAAGGTTATAGTCATATCGGTACAATCAGTCCCCGTGATGGTGCTGCGGA
GCAAGCGAAAGACCTGCTCGTGATAGGCCGTGCGCGCCTCCTGGCAGGTG
ACACATCGTCTTCGCTGGAGATGTTTCGGCGCGCGGCAGACCTTGACCCA
CGGAATTGCACGGCTAAAGTGGAATTGGGTCGTGCTTTGATCGCTTGCGG
GATGAGGATGGAGGGGTTCGAGAGCTTGGTGGCTGCCTTTCAGCTCGACT
CGTTGTGTCCTGGCGCGAAGGATGCTTTCCGCGAGTACTACCGGGCCGAG
ATCGAG
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